View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_182 (Length: 250)
Name: NF8905A_low_182
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_182 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 2 - 250
Target Start/End: Original strand, 31717816 - 31718068
Alignment:
| Q |
2 |
ctggtatcctatttgggacgaagtgttcaaatcccatttgagtgatccggagctggctttgctccgggtcgcagtgaaggataaagataaggcatcagat |
101 |
Q |
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| T |
31717816 |
ctggtatcctatttgggacgaagtgttcaaatcccgtttgagtgatccggagctcgctttgctccggatcgcagtgaaggataaagataaggcatcagat |
31717915 |
T |
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| Q |
102 |
gagagaagaattttggtttgttgctttgtgcgacagaaagggaaagaaatataattc----tgtcaagcttttgcttcttttccaacttgaatcttcaat |
197 |
Q |
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| T |
31717916 |
gagacaaggattttggtttgttgctttgtgcgacagaaagggaaagaaatataattaattatgtcaagcttttgcttcttttccaacttgaatattcaaa |
31718015 |
T |
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| Q |
198 |
tatattatagtaggtatcattattctaattatattcacggttttcttttctag |
250 |
Q |
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| T |
31718016 |
tatattgtagtaggtatcattaatctaaatatatacaaggttttcctttctag |
31718068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 111 - 203
Target Start/End: Original strand, 31654383 - 31654475
Alignment:
| Q |
111 |
attttggtttgttgctttgtgcgacagaaagggaaagaaatataattctgtcaagcttttgcttcttttccaacttgaatcttcaattatatt |
203 |
Q |
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| T |
31654383 |
atttcggtctgttgctttgtgtgacagaaagggaaagaaatataactctgtcaagcttttacttggattccaccttgaaactttaaatatatt |
31654475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 111 - 170
Target Start/End: Original strand, 31704751 - 31704810
Alignment:
| Q |
111 |
attttggtttgttgctttgtgcgacagaaagggaaagaaatataattctgtcaagctttt |
170 |
Q |
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| T |
31704751 |
atttcggtctgttgctttgtgtgacagaaagggaaagaaatataactctgtcaagctttt |
31704810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 100
Target Start/End: Original strand, 31654237 - 31654334
Alignment:
| Q |
3 |
tggtatcctatttgggacgaagtgttcaaatcccatttgagtgatccggagctggctttgctccgggtcgcagtgaaggataaagataaggcatcaga |
100 |
Q |
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| T |
31654237 |
tggtatcctgtttgggacgaagagttcgaattccaattgactgttccagagcttgcattgctccggatcgaagtgaaagataaagataagggatcaga |
31654334 |
T |
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