View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_188 (Length: 249)
Name: NF8905A_low_188
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_188 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 37180210 - 37179999
Alignment:
| Q |
18 |
acacaaccaaatttaccaaccattcccactttaccaaaaccaacaacattaccacctttaccttcaattccaaatatgcctcaaggaaatcttcctccat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37180210 |
acacaaccaaatttaccaaccattcccactttaccaaaaccaacaacattaccacctttaccttcaattccaaatatgcctcaaggaaatcttcctccat |
37180111 |
T |
|
| Q |
118 |
tgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccatctctcaacattccaccattgcc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37180110 |
tgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccatctctcaacattccaccattgcc |
37180011 |
T |
|
| Q |
218 |
agcagtcacttc |
229 |
Q |
| |
|
|||||||||||| |
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|
| T |
37180010 |
agcagtcacttc |
37179999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 37189644 - 37189855
Alignment:
| Q |
18 |
acacaaccaaatttaccaaccattcccactttaccaaaaccaacaacattaccacctttaccttcaattccaaatatgcctcaaggaaatcttcctccat |
117 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37189644 |
acacaaccaaatttaccaaccattcccactttaccaaaaccaacaacattaccacctttaccttcaattccaaatatgcctcaaggaaatcttcctccat |
37189743 |
T |
|
| Q |
118 |
tgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccatctctcaacattccaccattgcc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37189744 |
tgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccatctctcaacattccaccattgcc |
37189843 |
T |
|
| Q |
218 |
agcagtcacttc |
229 |
Q |
| |
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|||||||||||| |
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|
| T |
37189844 |
agcagtcacttc |
37189855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 37181527 - 37181738
Alignment:
| Q |
18 |
acacaaccaaatttaccaaccattcccactttaccaaaaccaacaacattaccacctttaccttcaattccaaatatgcctcaaggaaatcttcctccat |
117 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37181527 |
acacaaccaaatttaccagccattcccactttaccaaaaccaacaacattaccacctttaccttcaattccaaatatgcctcaaggaaatcttcctccat |
37181626 |
T |
|
| Q |
118 |
tgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccatctctcaacattccaccattgcc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37181627 |
tgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccatctctcaacattccaccattgcc |
37181726 |
T |
|
| Q |
218 |
agcagtcacttc |
229 |
Q |
| |
|
|||||||||||| |
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| T |
37181727 |
agcagtcacttc |
37181738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 37187894 - 37187682
Alignment:
| Q |
17 |
aacacaaccaaatttaccaaccattcccactttaccaaaaccaacaacattaccacctttaccttcaattccaaatatgcctcaaggaaatcttcctcca |
116 |
Q |
| |
|
||||||||||||||| || | |||||||| ||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
37187894 |
aacacaaccaaatttgcctaacattcccaatttaccaaatccaactacattaccacctttgccttcaattccaaatatgcctcagggaaatcttcctcca |
37187795 |
T |
|
| Q |
117 |
ttgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccatctctcaacattccaccattgc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37187794 |
ttgcctactatcccttctatgcctaaactcactatgccaccacttcctagctttcctacaaattttccaacaattccatctctcaacattccaccattgc |
37187695 |
T |
|
| Q |
217 |
cagcagtcacttc |
229 |
Q |
| |
|
|||||| |||||| |
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|
| T |
37187694 |
cagcagccacttc |
37187682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 38704268 - 38704220
Alignment:
| Q |
78 |
ccttcaattccaaatatgcctcaaggaaatcttcctccattgcctacta |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38704268 |
ccttcaattccaaatatgcctcaaggaaatcttcctccattgcctacta |
38704220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 96 - 214
Target Start/End: Original strand, 27096701 - 27096816
Alignment:
| Q |
96 |
cctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccat |
195 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||| || ||||||| |||||| |
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| T |
27096701 |
cctcaaggtaatgttcctccattgcctactatcccttctatgcctaagctcactatgccaccacttcctagcattcctaccaa---tccaacacttccat |
27096797 |
T |
|
| Q |
196 |
ctctcaacattccaccatt |
214 |
Q |
| |
|
|||||||| |||||||||| |
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|
| T |
27096798 |
ctctcaactttccaccatt |
27096816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 96 - 214
Target Start/End: Original strand, 27103004 - 27103119
Alignment:
| Q |
96 |
cctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccat |
195 |
Q |
| |
|
|||||||| ||| |||||||||||||||| |||||||| ||||||| |||||||||||||||||||| || |||| || || ||||||| |||||| |
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|
| T |
27103004 |
cctcaaggtaatgttcctccattgcctaccatcccttcagtgcctaagctcactatgccaccacttcctagcattccaaccaa---tccaacacttccat |
27103100 |
T |
|
| Q |
196 |
ctctcaacattccaccatt |
214 |
Q |
| |
|
|||||||| |||||||||| |
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|
| T |
27103101 |
ctctcaactttccaccatt |
27103119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 27102854 - 27102898
Alignment:
| Q |
18 |
acacaaccaaatttaccaaccattcccactttaccaaaaccaaca |
62 |
Q |
| |
|
|||||||| ||||| |||| ||||||||||||||||||||||||| |
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|
| T |
27102854 |
acacaacccaatttgccaagcattcccactttaccaaaaccaaca |
27102898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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