View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_194 (Length: 248)
Name: NF8905A_low_194
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_194 |
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| [»] scaffold1075 (1 HSPs) |
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Alignment Details
Target: scaffold1075 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: scaffold1075
Description:
Target: scaffold1075; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 2800 - 2553
Alignment:
| Q |
1 |
atactttgattaacgatagttcaaagagtgaagaccatgttgatgctcgtagagaccttgaagttatgggcataagatctgacctttggtgcaatgaaaa |
100 |
Q |
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|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2800 |
atactttgcttaacgatagttcaaagagtaaagaccatgttgatgctcgtagagaccttgaagttatgggcataagatctgacctttggtgcaatgaaaa |
2701 |
T |
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| Q |
101 |
tggaaaaatttctccggcaatttttactttgactggtaaaagtaagagggaatttttaacaattttaaagaatatcacagtgcctgatggttattcaagc |
200 |
Q |
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| T |
2700 |
tggaaaaatttctccggcaatttttactttgactggtaaaagtaagagggattttttaacaattttaaagaatatcacagtgcctgatggttattcaagc |
2601 |
T |
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| Q |
201 |
aacatttccagatgcattgacttagaagctcttaagttgaaaggaacg |
248 |
Q |
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| T |
2600 |
aacatttctagatgcattgacttagaagctcttaagttgaaaggaacg |
2553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 17006297 - 17006542
Alignment:
| Q |
1 |
atactttgattaacgatagttcaaagagtgaagaccatgttgatgctcgtagagaccttgaagttatgggcataagatctgacctttggtgcaatgaaaa |
100 |
Q |
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|||||||| |||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17006297 |
atactttgcttaacgatagttcaaagaataaagaccatgttgatgctcgaagagaccttgaagttatgggcataagatctgacctttggtgcaatgaaaa |
17006396 |
T |
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| Q |
101 |
tggaaaaatttctccggcaatttttactttgactggtaaaagtaagagggaatttttaacaattttaaagaatatcacagtgcctgatggttattcaagc |
200 |
Q |
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| T |
17006397 |
tggaaaaatttctccgacaatttttactttgactggtaaatgtaagagggaatttttaacaattttaaagaatatcacagtgccggatggttattcaagc |
17006496 |
T |
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| Q |
201 |
aacatttccagatgcattgacttagaagctcttaagttgaaaggaa |
246 |
Q |
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| T |
17006497 |
aacatttctagatgcattgacttggaagctcttaagttgaaaggaa |
17006542 |
T |
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