View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8905A_low_195 (Length: 248)

Name: NF8905A_low_195
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8905A_low_195
NF8905A_low_195
[»] chr6 (14 HSPs)
chr6 (12-233)||(27513811-27514032)
chr6 (12-230)||(16821199-16821417)
chr6 (19-203)||(16637593-16637777)
chr6 (12-203)||(335510-335701)
chr6 (40-203)||(27055357-27055520)
chr6 (28-121)||(619563-619656)
chr6 (28-121)||(24147106-24147199)
chr6 (28-121)||(20044292-20044384)
chr6 (33-208)||(25503088-25503263)
chr6 (33-148)||(5007596-5007711)
chr6 (48-148)||(5989891-5989991)
chr6 (12-79)||(20456427-20456494)
chr6 (58-89)||(28306866-28306897)
chr6 (58-89)||(28355672-28355703)
[»] chr4 (5 HSPs)
chr4 (12-233)||(18040125-18040346)
chr4 (12-230)||(22707818-22708036)
chr4 (19-203)||(26217165-26217349)
chr4 (33-89)||(12509613-12509669)
chr4 (12-89)||(20556923-20557000)
[»] chr7 (12 HSPs)
chr7 (12-230)||(23882985-23883203)
chr7 (12-203)||(5206152-5206343)
chr7 (12-203)||(27437397-27437588)
chr7 (19-203)||(27973254-27973438)
chr7 (19-203)||(566144-566328)
chr7 (12-203)||(29025590-29025781)
chr7 (12-115)||(3428084-3428187)
chr7 (28-121)||(8814208-8814301)
chr7 (28-121)||(42634678-42634771)
chr7 (48-89)||(38413157-38413198)
chr7 (58-89)||(4944910-4944941)
chr7 (22-87)||(1957797-1957862)
[»] chr3 (17 HSPs)
chr3 (12-230)||(8808184-8808402)
chr3 (12-230)||(21611614-21611832)
chr3 (12-203)||(10719261-10719452)
chr3 (19-203)||(15681624-15681808)
chr3 (19-203)||(25266909-25267093)
chr3 (39-228)||(3241982-3242171)
chr3 (12-115)||(3680272-3680375)
chr3 (12-115)||(30016842-30016945)
chr3 (28-121)||(6198171-6198264)
chr3 (28-121)||(8620212-8620305)
chr3 (28-121)||(15533532-15533625)
chr3 (28-121)||(46396906-46396999)
chr3 (48-208)||(9551821-9551981)
chr3 (33-148)||(41001765-41001880)
chr3 (33-148)||(41010547-41010662)
chr3 (12-89)||(12476532-12476609)
chr3 (33-85)||(27884087-27884139)
[»] chr5 (16 HSPs)
chr5 (12-230)||(12391623-12391841)
chr5 (12-203)||(23639529-23639720)
chr5 (12-203)||(23833167-23833358)
chr5 (19-203)||(21992814-21992998)
chr5 (19-163)||(27230604-27230748)
chr5 (19-203)||(12177551-12177735)
chr5 (19-203)||(26086320-26086504)
chr5 (19-203)||(33841896-33842080)
chr5 (12-115)||(37581400-37581503)
chr5 (19-196)||(11810397-11810574)
chr5 (28-121)||(1801890-1801983)
chr5 (28-121)||(7258354-7258447)
chr5 (28-121)||(7790586-7790679)
chr5 (34-203)||(21864429-21864598)
chr5 (33-148)||(24961778-24961893)
chr5 (39-88)||(20380525-20380574)
[»] chr1 (6 HSPs)
chr1 (18-232)||(6201166-6201380)
chr1 (19-203)||(31555482-31555666)
chr1 (33-148)||(31543425-31543540)
chr1 (48-89)||(13467253-13467294)
chr1 (11-79)||(19371816-19371884)
chr1 (48-89)||(13472247-13472288)
[»] scaffold0004 (1 HSPs)
scaffold0004 (12-229)||(191691-191908)
[»] scaffold0551 (1 HSPs)
scaffold0551 (12-233)||(9552-9773)
[»] chr2 (9 HSPs)
chr2 (12-203)||(16276885-16277076)
chr2 (19-203)||(21856559-21856743)
chr2 (19-203)||(3763006-3763190)
chr2 (48-196)||(21116447-21116596)
chr2 (33-148)||(35142089-35142204)
chr2 (48-148)||(24288600-24288700)
chr2 (33-148)||(15949630-15949745)
chr2 (58-148)||(20614202-20614292)
chr2 (39-88)||(30689904-30689953)
[»] scaffold0389 (2 HSPs)
scaffold0389 (12-203)||(3156-3347)
scaffold0389 (47-80)||(2799-2832)
[»] scaffold1197 (1 HSPs)
scaffold1197 (165-231)||(2392-2458)
[»] chr8 (3 HSPs)
chr8 (28-121)||(21479598-21479691)
chr8 (21-87)||(24706478-24706544)
chr8 (12-89)||(32002753-32002830)
[»] scaffold0016 (1 HSPs)
scaffold0016 (48-148)||(19124-19224)
[»] scaffold0044 (2 HSPs)
scaffold0044 (33-88)||(71083-71138)
scaffold0044 (34-80)||(71468-71514)
[»] scaffold0157 (1 HSPs)
scaffold0157 (33-89)||(10808-10864)
[»] scaffold0009 (1 HSPs)
scaffold0009 (34-89)||(152731-152786)
[»] scaffold0605 (1 HSPs)
scaffold0605 (51-89)||(5266-5304)
[»] scaffold0202 (1 HSPs)
scaffold0202 (12-89)||(24773-24850)
[»] scaffold0132 (1 HSPs)
scaffold0132 (12-89)||(31876-31953)
[»] scaffold0005 (1 HSPs)
scaffold0005 (34-79)||(301987-302032)
[»] scaffold0002 (1 HSPs)
scaffold0002 (48-148)||(125221-125321)


Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 12 - 233
Target Start/End: Complemental strand, 27514032 - 27513811
Alignment:
Q  12 tggacatcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatt 111  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  27514032 tggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaggtctccacctagccggcaatt 27513933  T
Q  112 tcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatcatactgcgg 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  27513932 tcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaaagaaggaagcagctccgcatatttcataggaatcagatcatactgcgg 27513833  T
Q  212 tgttttctgagcctgatgatgt 233  Q
    ||||||||||||||||||||||    
T  27513832 tgttttctgagcctgatgatgt 27513811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 16821199 - 16821417
Alignment:
Q  12 tggacatcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatt 111  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  16821199 tggacctcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaggtctccacctagccggtaatt 16821298  T
Q  112 tcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatcatactgcgg 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  16821299 tcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaaagaaggaagcagctccgcatatttcataggaatcggatcatactgcgg 16821398  T
Q  212 tgttttctgagcctgatga 230  Q
    |||||||||||||||||||    
T  16821399 tgttttctgagcctgatga 16821417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 16637777 - 16637593
Alignment:
Q  19 caatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttagg 118  Q
    |||||||||| || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||||| | ||||||||||||||| ||    
T  16637777 caatcttcaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatcgagccggcaatttcttcgg 16637678  T
Q  119 tatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatca 203  Q
    |||||| |||||||| ||||| ||||||||||| || ||||||||  | ||||||| ||  |||||||| || ||||| ||||||    
T  16637677 tatcggaggaggtggcctggtttggacaaggttcctctcaagcaaatagggaagcaactttgcatatttaattggaattggatca 16637593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 335510 - 335701
Alignment:
Q  12 tggacatcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatt 111  Q
    ||||| |||||||| || || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||||| | |||||||||||    
T  335510 tggacttcaatctttaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatcgagccggcaatt 335609  T
Q  112 tcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatca 203  Q
    |||| ||||| || |||||||| || |||||||||||| | || ||||||||  | |||| || |||| |||||||||| ||||||||||||    
T  335610 tcttcggtattggaggaggtggcctagtctggacaaggatcctctcaagcaaatagggaaacaactccccatatttcattggaatcggatca 335701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 40 - 203
Target Start/End: Original strand, 27055357 - 27055520
Alignment:
Q  40 gctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtggtctggt 139  Q
    ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||||| | ||||||||||||||| ||||| || |||||||| || ||    
T  27055357 gctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatcgagccggcaatttcttcggtattggaggaggtggcctagt 27055456  T
Q  140 ctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatca 203  Q
    | |||||||||| || ||||||||  | |||| || |||| |||||||||| ||||||||||||    
T  27055457 ccggacaaggttcctctcaagcaaatagggaaacaactccccatatttcattggaatcggatca 27055520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 619563 - 619656
Alignment:
Q  28 aggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtat 121  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||| ||  |||||||||||| |||||||||||| |||||    
T  619563 aggagaaacagtgctcaacgtcatgaccttgtgccccttgatggaaggtgcaagagagatcttgtctccacctagtcggcaatttcttgggtat 619656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 24147106 - 24147199
Alignment:
Q  28 aggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtat 121  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||| ||  |||||||||||| |||||||||||| |||||    
T  24147106 aggagaaacagtgctcaacgtcatgaccttgtgccccttgatggaaggtgcaagagagatcctgtctccacctagtcggcaatttcttgggtat 24147199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 20044292 - 20044384
Alignment:
Q  28 aggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtat 121  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||| ||  |||||||||||| |||||||||||| |||||    
T  20044292 aggagaaaca-tgctcaacgtcatgaccttgtgccccttgatggaaggtgcaagagagatcctgtctccacctagtcggcaatttcttgggtat 20044384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 208
Target Start/End: Original strand, 25503088 - 25503263
Alignment:
Q  33 aaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtg 132  Q
    |||||| ||||||  ||||||||  ||||||||||||||||| ||||| |||||||  | ||  | | ||| |||||||||||||||||  | |||||||    
T  25503088 aaacaacgctcaatatcatgaccaggtgccccttgatggaagacacaagagaggtcgggcctatagccagctggcaatttcttaggtatacgaggaggtg 25503187  T
Q  133 gtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatcatactg 208  Q
    |||||||||||||||| || ||   ||||||    |||| || | ||||||||||||| |||||||||||| ||||    
T  25503188 gtctggtctggacaagcttcctcctaagcaaatcgggaaacaacaccgcatatttcatgggaatcggatcaaactg 25503263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 148
Target Start/End: Complemental strand, 5007711 - 5007596
Alignment:
Q  33 aaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtg 132  Q
    |||||| ||||||  ||||||||  ||||||||||||||||| ||||| |||||||  | ||  ||| ||| |||||||||||||| ||    |||||||    
T  5007711 aaacaacgctcaatatcatgaccaggtgccccttgatggaagacacaagagaggtcgggcctatacccagctggcaatttcttaggcatacaaggaggtg 5007612  T
Q  133 gtctggtctggacaag 148  Q
    ||||||||||||||||    
T  5007611 gtctggtctggacaag 5007596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 48 - 148
Target Start/End: Complemental strand, 5989991 - 5989891
Alignment:
Q  48 tcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaa 147  Q
    ||||||||  ||||||||||||||||| ||||| |||||||  | ||  ||| ||| |||||||||||||| ||    ||||||||||||||||||||||    
T  5989991 tcatgaccaggtgccccttgatggaagacacaagagaggtcgggcctatacccagctggcaatttcttaggcatacaaggaggtggtctggtctggacaa 5989892  T
Q  148 g 148  Q
    |    
T  5989891 g 5989891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 20456427 - 20456494
Alignment:
Q  12 tggacatcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcaca 79  Q
    ||||| ||||||||||| |||||||| ||||| | |||||| ||  |||| |||||||||||||||||    
T  20456427 tggacttcaatcttcaaagagaaacagtgctcgatgtcatggccgggtgctccttgatggaaggcaca 20456494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 89
Target Start/End: Complemental strand, 28306897 - 28306866
Alignment:
Q  58 gtgccccttgatggaaggcacaaaagaggtca 89  Q
    ||||||||||||||||||||||||||||||||    
T  28306897 gtgccccttgatggaaggcacaaaagaggtca 28306866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 89
Target Start/End: Complemental strand, 28355703 - 28355672
Alignment:
Q  58 gtgccccttgatggaaggcacaaaagaggtca 89  Q
    ||||||||||||||||||||||||||||||||    
T  28355703 gtgccccttgatggaaggcacaaaagaggtca 28355672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 12 - 233
Target Start/End: Complemental strand, 18040346 - 18040125
Alignment:
Q  12 tggacatcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatt 111  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18040346 tggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaggtctccacctagccggcaatt 18040247  T
Q  112 tcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatcatactgcgg 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  18040246 tcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaaagaaggaagcagctccgcatatttcataggaatcagatcatactgcgg 18040147  T
Q  212 tgttttctgagcctgatgatgt 233  Q
    ||||||||||||||||||||||    
T  18040146 tgttttctgagcctgatgatgt 18040125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 12 - 230
Target Start/End: Complemental strand, 22708036 - 22707818
Alignment:
Q  12 tggacatcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatt 111  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  22708036 tggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaggtctccacctagccggtaatt 22707937  T
Q  112 tcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatcatactgcgg 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  22707936 tcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaatgaaggaagcagctccgcatatttcataggaatcggatcatactgcgg 22707837  T
Q  212 tgttttctgagcctgatga 230  Q
    |||||||||||||||||||    
T  22707836 tgttttctgagcctgatga 22707818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 26217165 - 26217349
Alignment:
Q  19 caatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttagg 118  Q
    |||||||||| || |||||  ||||||| ||||||| ||||||||||||||||||  |||||||||| ||| ||||||| | |||||||||| |||| ||    
T  26217165 caatcttcaaagaaaaacagcgctcaacatcatgacattgtgccccttgatggaaaacacaaaagagatcaggtctccatcgagccggcaatatcttcgg 26217264  T
Q  119 tatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatca 203  Q
    |||||| |||||||| ||| | ||||||||||| || ||||||||  | ||||||| ||  |||||||| || ||||| ||||||    
T  26217265 tatcggaggaggtggcctgatttggacaaggttcctctcaagcaaatagggaagcaactttgcatatttaattggaattggatca 26217349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 12509613 - 12509669
Alignment:
Q  33 aaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtca 89  Q
    |||||||| ||| | ||||||||| |||||||||||||||| |||||| ||||||||    
T  12509613 aaacaatgttcagcatcatgacctggtgccccttgatggaaagcacaagagaggtca 12509669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 20557000 - 20556923
Alignment:
Q  12 tggacatcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtca 89  Q
    ||||| ||||||||||| |||||||| ||||| |||| ||| ||  | || |||||||||||||||||  ||||||||    
T  20557000 tggacttcaatcttcaaagagaaacagtgctcgacgtgatggccgggagctccttgatggaaggcacaggagaggtca 20556923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 23882985 - 23883203
Alignment:
Q  12 tggacatcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatt 111  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  23882985 tggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaggtctccacctagccggtaatt 23883084  T
Q  112 tcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatcatactgcgg 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  23883085 tcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaatgaaggaagcagctccgcatatttcataggaatcggatcatactgcgg 23883184  T
Q  212 tgttttctgagcctgatga 230  Q
    |||||||||||||||||||    
T  23883185 tgttttctgagcctgatga 23883203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 5206152 - 5206343
Alignment:
Q  12 tggacatcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatt 111  Q
    ||||| |||||||| || || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||||| | |||||||||||    
T  5206152 tggacttcaatctttaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatcgagccggcaatt 5206251  T
Q  112 tcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatca 203  Q
    |||| ||||| || |||||||| || |||||||||||||| || ||||||||  | |||| || |||| |||||||||| ||||||||||||    
T  5206252 tcttcggtattggaggaggtggcctagtctggacaaggttcctctcaagcaaatagggaaacaactccccatatttcattggaatcggatca 5206343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 12 - 203
Target Start/End: Complemental strand, 27437588 - 27437397
Alignment:
Q  12 tggacatcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatt 111  Q
    ||||| |||||||| || || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||||| | |||||||||||    
T  27437588 tggacttcaatctttaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatcgagccggcaatt 27437489  T
Q  112 tcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatca 203  Q
    |||| ||||| || |||||||| || |||||||||||||| || ||||||||  | |||| || |||| |||||||||| ||||||||||||    
T  27437488 tcttcggtattggaggaggtggcctagtctggacaaggttcctctcaagcaaatagggaaacaactccccatatttcattggaatcggatca 27437397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 27973254 - 27973438
Alignment:
Q  19 caatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttagg 118  Q
    |||||||||| || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||||| | |||||||||| |||| ||    
T  27973254 caatcttcaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatcgagccggcaatatcttcgg 27973353  T
Q  119 tatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatca 203  Q
    |||||| |||||||| ||||| ||||||||||| || ||||||||  | ||||||| ||  |||||||| || ||||| ||||||    
T  27973354 tatcggaggaggtggcctggtttggacaaggttcctctcaagcaaatagggaagcaactttgcatatttaattggaattggatca 27973438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 566144 - 566328
Alignment:
Q  19 caatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttagg 118  Q
    |||||||||| || |||||  |||| || ||||||||||||||||||||||||||  |||||||||| ||| ||||||| | |||||||||| | || ||    
T  566144 caatcttcaaagaaaaacagcgctcgacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatcgagccggcaatattttcgg 566243  T
Q  119 tatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatca 203  Q
    |||||| |||||||||||||| ||||||||||| || ||||||||  | ||||||| ||  |||||||| || ||||| ||||||    
T  566244 tatcggaggaggtggtctggtttggacaaggttcctctcaagcaaatagggaagcaactttgcatatttaattggaattggatca 566328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 203
Target Start/End: Complemental strand, 29025781 - 29025590
Alignment:
Q  12 tggacatcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatt 111  Q
    ||||| |||||||| || || |||||   |||||| ||||||||||||||||| ||||||||  |||||||||| ||| ||||||| | |||||||||||    
T  29025781 tggacttcaatctttaaagaaaaacagcactcaacatcatgaccttgtgccccctgatggaaaacacaaaagagatcaggtctccatcgagccggcaatt 29025682  T
Q  112 tcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatca 203  Q
    |||| ||||| || |||||||| || |||||||||||||| || ||||  ||  | |||| || |||| |||||||||| ||||||||||||    
T  29025681 tcttcggtattggaggaggtggcctagtctggacaaggttcctctcaaataaatagggaaacaactccccatatttcattggaatcggatca 29025590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 3428084 - 3428187
Alignment:
Q  12 tggacatcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatt 111  Q
    ||||| |||||||||||||||||||||||||||| |||||||| |||||| ||||||||||| |||||| |||||||| |||||||   |||| ||||||    
T  3428084 tggacttcaatcttcaaggagaaacaatgctcaatgtcatgactttgtgctccttgatggaaagcacaacagaggtcaggtctccattgagccagcaatt 3428183  T
Q  112 tctt 115  Q
    ||||    
T  3428184 tctt 3428187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 121
Target Start/End: Complemental strand, 8814301 - 8814208
Alignment:
Q  28 aggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtat 121  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||| ||  |||||||||||| |||||||||||| |||||    
T  8814301 aggagaaacagtgctcaacgtcatgaccttgtgccccttgatggaaggtgcaagagagatcttgtctccacctagtcggcaatttcttgggtat 8814208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 42634678 - 42634771
Alignment:
Q  28 aggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtat 121  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||| ||  |||||||||||| |||||||||||| |||||    
T  42634678 aggagaaacagtgctcaacgtcatgaccttgtgccccttgatggaaggtgcaagagagatcctgtctccacctagtcggcaatttcttgggtat 42634771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 38413198 - 38413157
Alignment:
Q  48 tcatgaccttgtgccccttgatggaaggcacaaaagaggtca 89  Q
    ||||||||| ||||||||||||||||||||||| ||||||||    
T  38413198 tcatgacctggtgccccttgatggaaggcacaagagaggtca 38413157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 89
Target Start/End: Original strand, 4944910 - 4944941
Alignment:
Q  58 gtgccccttgatggaaggcacaaaagaggtca 89  Q
    ||||||||||||||||||||||||||||||||    
T  4944910 gtgccccttgatggaaggcacaaaagaggtca 4944941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 1957862 - 1957797
Alignment:
Q  22 tcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggt 87  Q
    ||||||| || ||||| |||||||  || |||| |  |||||||||||||||||||||||||||||    
T  1957862 tcttcaaagaaaaacagtgctcaatatcgtgacatgatgccccttgatggaaggcacaaaagaggt 1957797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 12 - 230
Target Start/End: Complemental strand, 8808402 - 8808184
Alignment:
Q  12 tggacatcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatt 111  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  8808402 tggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaggtctccacctagccggtaatt 8808303  T
Q  112 tcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatcatactgcgg 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8808302 tcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaatgaaggaagcagctccgcatatttcataggaatcggatcatactgcgg 8808203  T
Q  212 tgttttctgagcctgatga 230  Q
    |||||||||||||||||||    
T  8808202 tgttttctgagcctgatga 8808184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 12 - 230
Target Start/End: Complemental strand, 21611832 - 21611614
Alignment:
Q  12 tggacatcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatt 111  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  21611832 tggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaggtctccacctagccggtaatt 21611733  T
Q  112 tcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatcatactgcgg 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  21611732 tcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaatgaaggaagcagctccgcatatttcataggaatcggatcatactgcgg 21611633  T
Q  212 tgttttctgagcctgatga 230  Q
    |||||||||||||||||||    
T  21611632 tgttttctgagcctgatga 21611614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 10719261 - 10719452
Alignment:
Q  12 tggacatcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatt 111  Q
    ||||| |||||||| || || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||||| | |||||||||||    
T  10719261 tggacttcaatctttaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatcgagccggcaatt 10719360  T
Q  112 tcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatca 203  Q
    |||| ||||| || |||||||| || |||||||||||||| || ||||||||  | |||| || || | |||||||||| ||||||||||||    
T  10719361 tcttcggtattggaggaggtggcctagtctggacaaggttcctctcaagcaaatagggaaacaactacccatatttcattggaatcggatca 10719452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 15681624 - 15681808
Alignment:
Q  19 caatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttagg 118  Q
    |||||||||| || |||||  ||||||| |||||||||||||||||||||| |||  |||||||||| ||| ||||||| | ||||||||||||||| ||    
T  15681624 caatcttcaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatagaaaacacaaaagagatcaggtctccatcgagccggcaatttcttcgg 15681723  T
Q  119 tatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatca 203  Q
    |||||| |||||||| ||||| ||||||||||| || ||||||||  | ||| ||| ||  |||||||| || ||||||||||||    
T  15681724 tatcggaggaggtggcctggtttggacaaggttcctctcaagcaaatagggaggcaactttgcatatttaattggaatcggatca 15681808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 25267093 - 25266909
Alignment:
Q  19 caatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttagg 118  Q
    |||||||||| || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||||| | |||||||||| |||| ||    
T  25267093 caatcttcaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatcgagccggcaatatcttcgg 25266994  T
Q  119 tatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatca 203  Q
    |||||| |||||||| ||| | ||||||||||| || ||||||||  | ||||||| ||  |||||||| || ||||| ||||||    
T  25266993 tatcggaggaggtggcctgatttggacaaggttcctctcaagcaaatagggaagcaactttgcatatttaattggaattggatca 25266909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 39 - 228
Target Start/End: Original strand, 3241982 - 3242171
Alignment:
Q  39 tgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtggtctgg 138  Q
    |||||||||| ||||||| ||||  |||||||||||||| || |||||||  ||||| ||| ||| | |||||| ||||| | ||| ||| || ||||||    
T  3241982 tgctcaacgtaatgacctggtgctgcttgatggaaggcataagagaggtcgggtctctaccgagctgacaattttttaggcaccggaggacgttgtctgg 3242081  T
Q  139 tctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatcatactgcggtgttttctgagcctgat 228  Q
    |||||||||||||  | ||||||||  | ||||||| ||| ||||||||||||||||||  ||||||||| | || ||||||||||||||    
T  3242082 tctggacaaggttcttctcaagcaaatagggaagcaactctgcatatttcataggaatcaaatcatactgtgatgctttctgagcctgat 3242171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 3680375 - 3680272
Alignment:
Q  12 tggacatcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatt 111  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||| ||||||||  ||||||   |||| ||||||    
T  3680375 tggacttcaatcttcaaggagaaacaatgctcaacgtcatgactttgtgctccttgatggaaagcacaacagaggtcagttctccattgagccagcaatt 3680276  T
Q  112 tctt 115  Q
    ||||    
T  3680275 tctt 3680272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 30016945 - 30016842
Alignment:
Q  12 tggacatcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatt 111  Q
    ||||| |||||||||||||||||||||||||||| |||||||| |||||| ||||||||||| |||||| |||||||| |||||||   |||| ||||||    
T  30016945 tggacttcaatcttcaaggagaaacaatgctcaatgtcatgactttgtgctccttgatggaaagcacaacagaggtcaggtctccattgagccagcaatt 30016846  T
Q  112 tctt 115  Q
    ||||    
T  30016845 tctt 30016842  T

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Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 121
Target Start/End: Complemental strand, 6198264 - 6198171
Alignment:
Q  28 aggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtat 121  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||| ||  |||||||||||| |||||||||||| |||||    
T  6198264 aggagaaacagtgctcaacgtcatgaccttgtgccccttgatggaaggtgcaagagagatcctgtctccacctagtcggcaatttcttgggtat 6198171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 121
Target Start/End: Complemental strand, 8620305 - 8620212
Alignment:
Q  28 aggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtat 121  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||| ||  |||||||||||| |||||||||||| |||||    
T  8620305 aggagaaacagtgctcaacgtcatgaccttgtgccccttgatggaaggtgcaagagagatcctgtctccacctagtcggcaatttcttgggtat 8620212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 15533532 - 15533625
Alignment:
Q  28 aggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtat 121  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||| ||  |||||||||||| |||||||||||| |||||    
T  15533532 aggagaaacagtgctcaacgtcatgaccttgtgccccttgatggaaggtgcaagagagatcctgtctccacctagtcggcaatttcttgggtat 15533625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 46396906 - 46396999
Alignment:
Q  28 aggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtat 121  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||| ||  |||||||||||| |||||||||||| |||||    
T  46396906 aggagaaacagtgctcaacgtcatgaccttgtgccccttgatggaaggtgcaagagagatcctgtctccacctagtcggcaatttcttgggtat 46396999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 208
Target Start/End: Original strand, 9551821 - 9551981
Alignment:
Q  48 tcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaa 147  Q
    ||||||||  ||||||||||||||||| ||||| |||||||  | ||  | | ||| || ||||||||||||||  | ||||||||||||||||||||||    
T  9551821 tcatgaccaggtgccccttgatggaagacacaagagaggtcgggcctatagccagctggaaatttcttaggtatacgaggaggtggtctggtctggacaa 9551920  T
Q  148 ggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatcatactg 208  Q
    | || ||   ||||||    |||| || | ||||||||||||| |||||||||||| ||||    
T  9551921 gcttcctcctaagcaaatcgggaaacaacaccgcatatttcatgggaatcggatcaaactg 9551981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 148
Target Start/End: Complemental strand, 41001880 - 41001765
Alignment:
Q  33 aaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtg 132  Q
    |||||| ||||||  ||||||||  ||||||||||||||||| ||||| |||||||  | ||  ||| ||| |||||||||||||| ||    |||||||    
T  41001880 aaacaacgctcaatatcatgaccaggtgccccttgatggaagacacaagagaggtcgggcctatacccagctggcaatttcttaggcatacaaggaggtg 41001781  T
Q  133 gtctggtctggacaag 148  Q
    ||||||||||||||||    
T  41001780 gtctggtctggacaag 41001765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 148
Target Start/End: Complemental strand, 41010662 - 41010547
Alignment:
Q  33 aaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtg 132  Q
    |||||| ||||||  ||||||||  ||||||||||||||||| ||||| |||||||  | ||  ||| ||| |||||||||||||| ||    |||||||    
T  41010662 aaacaacgctcaatatcatgaccaggtgccccttgatggaagacacaagagaggtcgggcctatacccagctggcaatttcttaggcatacaaggaggtg 41010563  T
Q  133 gtctggtctggacaag 148  Q
    ||||||||||||||||    
T  41010562 gtctggtctggacaag 41010547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 12476532 - 12476609
Alignment:
Q  12 tggacatcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtca 89  Q
    ||||| ||| ||||||| |||||||||||||||| ||||||  |  |||| ||| |||||||||||||  ||||||||    
T  12476532 tggacttcagtcttcaaagagaaacaatgctcaatgtcatggtcgggtgctcctcgatggaaggcacaggagaggtca 12476609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 27884139 - 27884087
Alignment:
Q  33 aaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagag 85  Q
    ||||| |||||||  ||||||||| ||| ||||||||||||||||||| ||||    
T  27884139 aaacagtgctcaatatcatgacctggtgtcccttgatggaaggcacaatagag 27884087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 12391623 - 12391841
Alignment:
Q  12 tggacatcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatt 111  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||    
T  12391623 tggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaggtctccacctaggcggtaatt 12391722  T
Q  112 tcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatcatactgcgg 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  12391723 tcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaatgaaggaagcagctccgcatatttcataggaatcggatcatactgcgg 12391822  T
Q  212 tgttttctgagcctgatga 230  Q
    |||||||||||||||||||    
T  12391823 tgttttctgagcctgatga 12391841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 12 - 203
Target Start/End: Complemental strand, 23639720 - 23639529
Alignment:
Q  12 tggacatcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatt 111  Q
    ||||| |||||||| || || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||||| | |||||||||||    
T  23639720 tggacttcaatctttaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatcgagccggcaatt 23639621  T
Q  112 tcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatca 203  Q
    |||| ||||| || |||||||| || |||||||||||||| || ||||||||  | |||| || |||| |||||||||| ||||||||||||    
T  23639620 tcttcggtattggaggaggtggcctagtctggacaaggttcctctcaagcaaatagggaaacaactccccatatttcattggaatcggatca 23639529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 23833167 - 23833358
Alignment:
Q  12 tggacatcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatt 111  Q
    ||||| |||||||| || || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||||| | |||||||||||    
T  23833167 tggacttcaatctttaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatcgagccggcaatt 23833266  T
Q  112 tcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatca 203  Q
    |||| ||||| || |||||||| || |||||||||||||| || ||||||||  | |||| || |||| |||||||||| ||||||||||||    
T  23833267 tcttcggtattggaggaggtggcctagtctggacaaggttcctctcaagcaaatagggaaacaactccccatatttcattggaatcggatca 23833358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 21992814 - 21992998
Alignment:
Q  19 caatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttagg 118  Q
    |||||||||| || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||||| | ||||||||||||||| ||    
T  21992814 caatcttcaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatcgagccggcaatttcttcgg 21992913  T
Q  119 tatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatca 203  Q
    |||||| |||||||| || || ||||||||||| || ||||||||  | ||||||| ||  |||||||| || ||||||||||||    
T  21992914 tatcggaggaggtggcctagtttggacaaggttcctctcaagcaaatagggaagcaactttgcatatttaattggaatcggatca 21992998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 27230604 - 27230748
Alignment:
Q  19 caatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttagg 118  Q
    |||||||||| || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||||| | ||||||||||||||| ||    
T  27230604 caatcttcaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatcgagccggcaatttcttcgg 27230703  T
Q  119 tatcggcggaggtggtctggtctggacaaggtttctttcaagcaa 163  Q
    |||||| |||||||| ||||| ||||||||||| || ||||||||    
T  27230704 tatcggaggaggtggcctggtttggacaaggttcctctcaagcaa 27230748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 12177551 - 12177735
Alignment:
Q  19 caatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttagg 118  Q
    |||||||||| || |||||  |||| || ||||||||||||||||||||||||||  |||||||||| ||| ||||||| | |||||||||| | || ||    
T  12177551 caatcttcaaagaaaaacagcgctcgacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatcgagccggcaatattttcgg 12177650  T
Q  119 tatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatca 203  Q
    |||||| |||||||||||||| ||||||||||| || ||||||||  | ||||||| ||  |||||||| || ||||| ||||||    
T  12177651 tatcggaggaggtggtctggtttggacaaggttcctctcaagcaaatagggaagcaactttgcatatttaattggaattggatca 12177735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 26086320 - 26086504
Alignment:
Q  19 caatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttagg 118  Q
    |||||||||| || |||||  |||| || ||||||||||||||||||||||||||  |||||||||| ||| ||||||| | |||||||||| | || ||    
T  26086320 caatcttcaaagaaaaacagcgctcgacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatcgagccggcaatattttcgg 26086419  T
Q  119 tatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatca 203  Q
    |||||| |||||||||||||| ||||||||||| || ||||||||  | ||||||| ||  |||||||| || ||||| ||||||    
T  26086420 tatcggaggaggtggtctggtttggacaaggttcctctcaagcaaatagggaagcaactttgcatatttaattggaattggatca 26086504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 33841896 - 33842080
Alignment:
Q  19 caatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttagg 118  Q
    |||||||||| || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||||| | |||||||||| |||| ||    
T  33841896 caatcttcaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatcgagccggcaatatcttcgg 33841995  T
Q  119 tatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatca 203  Q
    |||||| |||||||| ||| | ||||||||||| || ||||||||  | ||||||| ||  |||||||| || ||||| ||||||    
T  33841996 tatcggaggaggtggcctgatttggacaaggttcctctcaagcaaatagggaagcaactttgcatatttaattggaattggatca 33842080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 37581503 - 37581400
Alignment:
Q  12 tggacatcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatt 111  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||| |||||||   |||||||||||    
T  37581503 tggacttcaatcttcaaggagaaacaatgctcaatgtcatgaccttgtgctccttgatggaaagcacaaaagaggtcaggtctccattgagccggcaatt 37581404  T
Q  112 tctt 115  Q
    ||||    
T  37581403 tctt 37581400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 11810397 - 11810574
Alignment:
Q  19 caatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttagg 118  Q
    |||||||||| || |||||  |||| || ||||||||||||||||||||||||||  |||||||||| ||| ||||||| | |||||||||| | || ||    
T  11810397 caatcttcaaagaaaaacagcgctcgacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatcgagccggcaatattttcgg 11810496  T
Q  119 tatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaat 196  Q
    |||||| |||||||| ||||| ||||||||||| || ||||||||  | ||||||| ||  |||||||| || |||||    
T  11810497 tatcggaggaggtggcctggtttggacaaggttcctctcaagcaaatagggaagcaactttgcatatttaattggaat 11810574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 121
Target Start/End: Complemental strand, 1801983 - 1801890
Alignment:
Q  28 aggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtat 121  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||| ||  |||||||||||| |||||||||||| |||||    
T  1801983 aggagaaacagtgctcaacgtcatgaccttgtgccccttgatggaaggtgcaagagagatcctgtctccacctagtcggcaatttcttgggtat 1801890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 7258354 - 7258447
Alignment:
Q  28 aggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtat 121  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||| ||  |||||||||||| |||||||||||| |||||    
T  7258354 aggagaaacagtgctcaacgtcatgaccttgtgccccttgatggaaggtgcaagagagatcctgtctccacctagtcggcaatttcttgggtat 7258447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 121
Target Start/End: Complemental strand, 7790679 - 7790586
Alignment:
Q  28 aggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtat 121  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||| ||  |||||||||||| |||||||||||| |||||    
T  7790679 aggagaaacagtgctcaacgtcatgaccttgtgccccttgatggaaggtgcaagagagatcctgtctccacctagtcggcaatttcttgggtat 7790586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 203
Target Start/End: Original strand, 21864429 - 21864598
Alignment:
Q  34 aacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtgg 133  Q
    ||||| |||||| |||||||||| ||||||||||||||||| ||||  |||| || | |||  |||  || |||||||||||||| || || ||||||||    
T  21864429 aacaacgctcaatgtcatgacctagtgccccttgatggaagacacatgagagatcgactctaaaccgtgcaggcaatttcttaggcattggaggaggtgg 21864528  T
Q  134 tctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatca 203  Q
    | | || ||||| ||||| || | ||||||   ||||| |||||||||||||||||| ||||| ||||||    
T  21864529 tttagtttggacgaggttcctcttaagcaaatcaggaaacagctccgcatatttcattggaattggatca 21864598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 148
Target Start/End: Original strand, 24961778 - 24961893
Alignment:
Q  33 aaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtg 132  Q
    |||||| ||||||  ||||||||  ||||||||||||||||| ||||| |||||||  | ||  ||| ||| |||||||||||||| ||    |||||||    
T  24961778 aaacaacgctcaatatcatgaccaggtgccccttgatggaagacacaagagaggtcgggcctatacccagctggcaatttcttaggcatacaaggaggtg 24961877  T
Q  133 gtctggtctggacaag 148  Q
    ||||||||||||||||    
T  24961878 gtctggtctggacaag 24961893  T

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Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 20380574 - 20380525
Alignment:
Q  39 tgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtc 88  Q
    |||||||  ||||||||| |||||||||||||||| ||||||||||||||    
T  20380574 tgctcaatatcatgacctggtgccccttgatggaaagcacaaaagaggtc 20380525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 6201166 - 6201380
Alignment:
Q  18 tcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttag 117  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  6201166 tcaatcttcaaggagaaacaatgctcaacgtcatgaccttgcgccccttgatggaagacacaaaagaggtcaggtctccacctagccggcaatttcttag 6201265  T
Q  118 gtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatcatactgcggtgtttt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6201266 gtatcggcggaggtggtctggtctggacaaggtttctttcaagcaaagaaggaagcagctccgcatatttcataggaatcggatcatactgcggtgtttt 6201365  T
Q  218 ctgagcctgatgatg 232  Q
    |||||||||||||||    
T  6201366 ctgagcctgatgatg 6201380  T

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Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 31555666 - 31555482
Alignment:
Q  19 caatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttagg 118  Q
    |||||||||| || |||||  |||| || ||||||||||||||||||||||||||  |||||||||| ||| ||||||| | ||||||||||||||| ||    
T  31555666 caatcttcaaagaaaaacagcgctcgacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatcgagccggcaatttcttcgg 31555567  T
Q  119 tatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatca 203  Q
    ||| || |||||||| || |||||||||||||| || ||||||||  | |||| || |||| |||||||||| ||||||||||||    
T  31555566 tattggaggaggtggcctagtctggacaaggttcctctcaagcaaatagggaaacaactccccatatttcattggaatcggatca 31555482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 148
Target Start/End: Complemental strand, 31543540 - 31543425
Alignment:
Q  33 aaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtg 132  Q
    |||||| ||||||  ||||||||  ||||||||||||||||| ||||| |||||||  | ||  ||| ||| |||||||||||||| ||    |||||||    
T  31543540 aaacaacgctcaatatcatgaccaggtgccccttgatggaagacacaagagaggtcgggcctatacccagctggcaatttcttaggcatacaaggaggtg 31543441  T
Q  133 gtctggtctggacaag 148  Q
    ||||||||||||||||    
T  31543440 gtctggtctggacaag 31543425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 13467294 - 13467253
Alignment:
Q  48 tcatgaccttgtgccccttgatggaaggcacaaaagaggtca 89  Q
    ||||||||| ||||||||||||||||||||||| ||||||||    
T  13467294 tcatgacctggtgccccttgatggaaggcacaagagaggtca 13467253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 19371884 - 19371816
Alignment:
Q  11 atggacatcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcaca 79  Q
    |||||| ||||||||||| |||||||| ||||| | |||||| ||  |||| |||||||||||||||||    
T  19371884 atggacttcaatcttcaaagagaaacagtgctcgatgtcatggccgggtgctccttgatggaaggcaca 19371816  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 13472288 - 13472247
Alignment:
Q  48 tcatgaccttgtgccccttgatggaaggcacaaaagaggtca 89  Q
    ||||||||| |||||||||||||||||||| || ||||||||    
T  13472288 tcatgacctggtgccccttgatggaaggcataagagaggtca 13472247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 12 - 229
Target Start/End: Original strand, 191691 - 191908
Alignment:
Q  12 tggacatcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatt 111  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||    
T  191691 tggacttcaatcttcaaggagaaacagtgctcaacgtcatgaccttgtgcccctcgatggaaggtacaaaagaggtcaggtctccacctagccggcaatt 191790  T
Q  112 tcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatcatactgcgg 211  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  191791 tcttaggtatcggcggaggtggtctggtctggacaaggttcctctcaagcaaagtaggaagcagctccgcatatttcataggaatcggatcatactgcgg 191890  T
Q  212 tgttttctgagcctgatg 229  Q
    ||||||||||||||||||    
T  191891 tgttttctgagcctgatg 191908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0551 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: scaffold0551
Description:

Target: scaffold0551; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 12 - 233
Target Start/End: Original strand, 9552 - 9773
Alignment:
Q  12 tggacatcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatt 111  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||| |||||||||||||||||||||    
T  9552 tggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatgaaaggtacaatagaggtcaggtctccacctagccggcaatt 9651  T
Q  112 tcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatcatactgcgg 211  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||| ||||||| || ||    
T  9652 tcttaggtatcggcggaggtggtctggtctggacaaggttcctctcaagcaaagaaggaagcagctccgcatatttcataggaatcagatcatattgtgg 9751  T
Q  212 tgttttctgagcctgatgatgt 233  Q
    ||||||||||||||||||||||    
T  9752 tgttttctgagcctgatgatgt 9773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 12 - 203
Target Start/End: Complemental strand, 16277076 - 16276885
Alignment:
Q  12 tggacatcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatt 111  Q
    ||||| |||||||| || || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||||| | |||||||||||    
T  16277076 tggacttcaatctttaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatcgagccggcaatt 16276977  T
Q  112 tcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatca 203  Q
    |||| ||||| || |||||||| || |||||||||||||| || ||||||||  | |||| || |||| |||||||||| ||||||||||||    
T  16276976 tcttcggtattggaggaggtggcctagtctggacaaggttcctctcaagcaaatagggaaacaactccccatatttcattggaatcggatca 16276885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 21856559 - 21856743
Alignment:
Q  19 caatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttagg 118  Q
    |||||||||| || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||||| | ||||||||||||||| ||    
T  21856559 caatcttcaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatcgagccggcaatttcttcgg 21856658  T
Q  119 tatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatca 203  Q
    |||||| |||||||| || || ||||||||||| || ||||||||  | ||||||| ||  |||||||| || ||||||||||||    
T  21856659 tatcggaggaggtggcctagtttggacaaggttcctctcaagcaaatagggaagcaactttgcatatttaattggaatcggatca 21856743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 3763006 - 3763190
Alignment:
Q  19 caatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttagg 118  Q
    |||||||||| || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||||| | |||||||||| |||| ||    
T  3763006 caatcttcaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatcgagccggcaatatcttcgg 3763105  T
Q  119 tatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatca 203  Q
    |||||| |||||||| ||| | ||||||||||| || ||||||||  | ||||||| ||  |||||||| || ||||| ||||||    
T  3763106 tatcggaggaggtggcctgatttggacaaggttcctctcaagcaaatagggaagcaactttgcatatttaattggaattggatca 3763190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 196
Target Start/End: Complemental strand, 21116596 - 21116447
Alignment:
Q  48 tcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggc-aatttcttaggtatcggcggaggtggtctggtctggaca 146  Q
    |||||| || |||||||||||||||||||||||||||||||  | ||  ||| ||| ||| ||||||||||||| | |   |||||||||||||||||||    
T  21116596 tcatgatctggtgccccttgatggaaggcacaaaagaggtcgggcctatacccagctggcaaatttcttaggtacccgataaggtggtctggtctggaca 21116497  T
Q  147 aggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaat 196  Q
    |||||  | | ||||||    ||||||||||| |||||||| || |||||    
T  21116496 aggttcttcttaagcaaaccgggaagcagctctgcatattttatgggaat 21116447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 148
Target Start/End: Complemental strand, 35142204 - 35142089
Alignment:
Q  33 aaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtg 132  Q
    |||||| ||||||  ||||||||  ||||||||||||||||| ||||| |||||||  | ||  ||| ||| |||||||||||||| ||    |||||||    
T  35142204 aaacaacgctcaatatcatgaccaggtgccccttgatggaagacacaagagaggtcgggcctatacccagctggcaatttcttaggcatacaaggaggtg 35142105  T
Q  133 gtctggtctggacaag 148  Q
    ||||||||||||||||    
T  35142104 gtctggtctggacaag 35142089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 48 - 148
Target Start/End: Complemental strand, 24288700 - 24288600
Alignment:
Q  48 tcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaa 147  Q
    ||||||||  ||||||||||||||||| ||||| |||||||  | ||  ||| ||| |||||||||||||| ||  | ||| ||||||||||||||||||    
T  24288700 tcatgaccaggtgccccttgatggaagacacaagagaggtcgggcctatacccagctggcaatttcttaggcatacgaggaagtggtctggtctggacaa 24288601  T
Q  148 g 148  Q
    |    
T  24288600 g 24288600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 148
Target Start/End: Original strand, 15949630 - 15949745
Alignment:
Q  33 aaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtg 132  Q
    |||||| ||||||  ||||||||  ||||||||||||||||| ||||| |||||||  | ||  ||| ||| |||||||||||||| ||    |||||||    
T  15949630 aaacaacgctcaatatcatgaccaggtgccccttgatggaagacacaagagaggtcgggcctatacccagctggcaatttcttaggcatacaaggaggtg 15949729  T
Q  133 gtctggtctggacaag 148  Q
    |||| |||||||||||    
T  15949730 gtcttgtctggacaag 15949745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 20614292 - 20614202
Alignment:
Q  58 gtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaag 148  Q
    ||||||||||||||||| ||||| |||||||  | ||  ||| ||| |||||||||||||| ||    |||||||||||||||||||||||    
T  20614292 gtgccccttgatggaagacacaatagaggtcgggcctatacccagctggcaatttcttaggcatacaaggaggtggtctggtctggacaag 20614202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 30689904 - 30689953
Alignment:
Q  39 tgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtc 88  Q
    |||||||  ||||||||| |||||||||||||||| ||||||||||||||    
T  30689904 tgctcaatatcatgacctggtgccccttgatggaaagcacaaaagaggtc 30689953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0389 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: scaffold0389
Description:

Target: scaffold0389; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 12 - 203
Target Start/End: Complemental strand, 3347 - 3156
Alignment:
Q  12 tggacatcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatt 111  Q
    ||||| ||||||||||| || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||||| | |||||||||||    
T  3347 tggacctcaatcttcaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatcgagccggcaatt 3248  T
Q  112 tcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatca 203  Q
    ||||  ||||||| |||||||| || || ||||||||||| || ||||| ||  | ||||||||||  ||||||||||| ||||| ||||||    
T  3247 tcttttgtatcggaggaggtggcctagtttggacaaggttcctctcaagaaaatagggaagcagctttgcatatttcattggaattggatca 3156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0389; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 80
Target Start/End: Complemental strand, 2832 - 2799
Alignment:
Q  47 gtcatgaccttgtgccccttgatggaaggcacaa 80  Q
    |||||||||| |||||||||||||||||||||||    
T  2832 gtcatgacctggtgccccttgatggaaggcacaa 2799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1197 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold1197
Description:

Target: scaffold1197; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 165 - 231
Target Start/End: Complemental strand, 2458 - 2392
Alignment:
Q  165 gaaggaagcagctccgcatatttcataggaatcggatcatactgcggtgttttctgagcctgatgat 231  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  2458 gaaggaagcagctccgcatatttcataggaatcagatcatactgcggtgttttccgagcctgatgat 2392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 21479598 - 21479691
Alignment:
Q  28 aggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtat 121  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||| ||  |||||||||||| |||||||||||| |||||    
T  21479598 aggagaaacagtgctcaacgtcatgaccttgtgccccttgatggaaggtgcaagagagatcctgtctccacctagtcggcaatttcttgggtat 21479691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 24706478 - 24706544
Alignment:
Q  21 atcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggt 87  Q
    |||||||| |||||||| |||||||||||||||  | ||||||||| ||||||||||||| ||||||    
T  24706478 atcttcaaagagaaacagtgctcaacgtcatgagttggtgccccttcatggaaggcacaagagaggt 24706544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 32002830 - 32002753
Alignment:
Q  12 tggacatcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtca 89  Q
    ||||| ||||||||||| |||||||| ||||| ||||| || ||  | || |||||||||||||||||  ||||||||    
T  32002830 tggacttcaatcttcaaagagaaacagtgctcgacgtcgtggccgggagctccttgatggaaggcacaggagaggtca 32002753  T

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Target: scaffold0016 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 48 - 148
Target Start/End: Complemental strand, 19224 - 19124
Alignment:
Q  48 tcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaa 147  Q
    ||||||||  ||||||||||||||||| ||||| |||||||  | ||  ||| ||| |||||||||||||| ||  | ||| ||||||||||||||||||    
T  19224 tcatgaccaggtgccccttgatggaagacacaagagaggtcgggcctatacccagctggcaatttcttaggcatacgaggatgtggtctggtctggacaa 19125  T
Q  148 g 148  Q
    |    
T  19124 g 19124  T

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Target: scaffold0044 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 71083 - 71138
Alignment:
Q  33 aaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtc 88  Q
    ||||| |||||||  ||||||||| |||||||||||||||| ||||||||||||||    
T  71083 aaacagtgctcaatatcatgacctggtgccccttgatggaaagcacaaaagaggtc 71138  T

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Target: scaffold0044; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 71468 - 71514
Alignment:
Q  34 aacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaa 80  Q
    |||| ||||||  |||||||||| |||||||||||||||||||||||    
T  71468 aacactgctcagtgtcatgacctggtgccccttgatggaaggcacaa 71514  T

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Target: scaffold0157 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 10864 - 10808
Alignment:
Q  33 aaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtca 89  Q
    |||||||| ||| | ||||||||| |||||||||||||||| |||||| ||||||||    
T  10864 aaacaatgttcagcatcatgacctggtgccccttgatggaaagcacaagagaggtca 10808  T

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Target: scaffold0009 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 89
Target Start/End: Complemental strand, 152786 - 152731
Alignment:
Q  34 aacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtca 89  Q
    |||| ||||| | |||||| ||| |||||||||||||||||||||||||| |||||    
T  152786 aacagtgctcgatgtcatgtcctagtgccccttgatggaaggcacaaaagcggtca 152731  T

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Target: scaffold0605 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0605
Description:

Target: scaffold0605; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 89
Target Start/End: Original strand, 5266 - 5304
Alignment:
Q  51 tgaccttgtgccccttgatggaaggcacaaaagaggtca 89  Q
    |||||| ||||||||||||||||||||||| ||||||||    
T  5266 tgacctggtgccccttgatggaaggcacaagagaggtca 5304  T

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Target: scaffold0202 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 24773 - 24850
Alignment:
Q  12 tggacatcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtca 89  Q
    ||||| ||||||||||| |||||||| || || | |||||| ||  |||| |||||||||||||||||  ||||||||    
T  24773 tggacttcaatcttcaaagagaaacagtgttcgatgtcatggccgggtgctccttgatggaaggcacatgagaggtca 24850  T

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Target: scaffold0132 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 31953 - 31876
Alignment:
Q  12 tggacatcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtca 89  Q
    ||||| ||||||||||| |||||||| ||||| | |||||| ||  | || |||||||||||||||||  ||||||||    
T  31953 tggacttcaatcttcaaagagaaacagtgctcgatgtcatggccgggagctccttgatggaaggcacaggagaggtca 31876  T

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Target: scaffold0005 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 302032 - 301987
Alignment:
Q  34 aacaatgctcaacgtcatgaccttgtgccccttgatggaaggcaca 79  Q
    |||||||||||| |||||| ||  ||||||||||||||||||||||    
T  302032 aacaatgctcaatgtcatggccgggtgccccttgatggaaggcaca 301987  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 148
Target Start/End: Complemental strand, 125321 - 125221
Alignment:
Q  48 tcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaa 147  Q
    ||||||||  ||||||||||||||||| ||||| |||||||  | ||  ||| ||| | |||||||||||| ||    ||| ||||||||||||||||||    
T  125321 tcatgaccaggtgccccttgatggaagacacaagagaggtcgggcctatacccagctgacaatttcttaggcatacaaggacgtggtctggtctggacaa 125222  T
Q  148 g 148  Q
    |    
T  125221 g 125221  T

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