View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_197 (Length: 247)
Name: NF8905A_low_197
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_197 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 247
Target Start/End: Complemental strand, 10079074 - 10078840
Alignment:
| Q |
13 |
ggacatcatcatgtcgtgaattattttctggaccgagttctgagcatcattactagggtcggcttcaccagaaacagatgcctgctgttgttgcatggaa |
112 |
Q |
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| T |
10079074 |
ggacatcatcatgtcgtgaattattttctggaccgagttctgagcatcattactagggtcagcttcaccagaaacagatgcctgctgttgttgcatggaa |
10078975 |
T |
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| Q |
113 |
atattagctggtgagtttactgtacccatgtgatttgcagatgttaagccagggtgagaagtttgtgggttgttgttagatgaggacggtgttggtgaat |
212 |
Q |
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| T |
10078974 |
atattagctggtgagtttactgtacccatgtgatttgcagatgttaagccagggtgagaagtttgcgggttgttgttagatgaggacggtgttggtgaat |
10078875 |
T |
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| Q |
213 |
gaaaaggggacgagtttggttgtgcctgtggcact |
247 |
Q |
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| T |
10078874 |
gaaaaggggacgagtttggttgtgcctgtggcact |
10078840 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 246
Target Start/End: Original strand, 40776005 - 40776081
Alignment:
| Q |
173 |
gtttgtgggttgttgttagatgaggacggtgt---tggtgaatgaaaaggggacgagtttggttgtgcctgtggcac |
246 |
Q |
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| T |
40776005 |
gtttgtggggggttattagatgaggatggtgtaggtggtgactgaaaaggggatgagtttggctgggcctgtggcac |
40776081 |
T |
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