View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_204 (Length: 247)
Name: NF8905A_low_204
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_204 |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 5e-77; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 12 - 181
Target Start/End: Original strand, 434147 - 434316
Alignment:
| Q |
12 |
agatggacatcataccagtttgaacgaacacggaaaaatgttttcaatttaacaaccaaaaacaaaccttgacttcgaattttttcactgtcttaatcat |
111 |
Q |
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| T |
434147 |
agatgtacattataccagtttgaacgaacacggaaaaatgttttcaatttaacaaccaaaaacaaaccttgacttcggattttttgactgtcttaatcat |
434246 |
T |
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| Q |
112 |
aaatctgtcatcttgggtcaagtggaagaaaattccaattttgccaggagattaaagctacctgagggaa |
181 |
Q |
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| T |
434247 |
aaatctgtcatcttgggtcaagtggaagaaaattccacttttgccaggagattaaagctccctgagggaa |
434316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 12 - 179
Target Start/End: Complemental strand, 32938626 - 32938459
Alignment:
| Q |
12 |
agatggacatcataccagtttgaacgaacacggaaaaatgttttcaatttaacaaccaaaaacaaaccttgacttcgaattttttcactgtcttaatcat |
111 |
Q |
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| T |
32938626 |
agatgtacgtcatactagtttgaacaaacatggaaaaatgttttcaatttaacaaccaaaaacaaaccttgacttcggattttttcaccgtctttatcat |
32938527 |
T |
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| Q |
112 |
aaatctgtcatcttgggtcaagtggaagaaaattccaattttgccaggagattaaagctacctgaggg |
179 |
Q |
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| T |
32938526 |
aaatctatcatcttgggtcaagtagaagaagcttccacttttgccaggagatgaaagctccctgaggg |
32938459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 208
Target Start/End: Original strand, 434350 - 434380
Alignment:
| Q |
178 |
ggaaatggcttcctcaattgtaaaagaactt |
208 |
Q |
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| T |
434350 |
ggaaatggcttcctcaattgtaaaagaactt |
434380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 134
Target Start/End: Complemental strand, 24524459 - 24524401
Alignment:
| Q |
76 |
aaccttgacttcgaattttttcactgtcttaatcataaatctgtcatcttgggtcaagt |
134 |
Q |
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| T |
24524459 |
aaccttgacttcagatttcttcactgtcttaatcatgaatctgtcatcttgggtcaagt |
24524401 |
T |
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