View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8905A_low_207 (Length: 246)

Name: NF8905A_low_207
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8905A_low_207
NF8905A_low_207
[»] chr1 (6 HSPs)
chr1 (89-231)||(23915210-23915348)
chr1 (27-87)||(23915125-23915185)
chr1 (29-87)||(23922776-23922834)
chr1 (89-152)||(23922872-23922935)
chr1 (171-231)||(23922954-23923014)
chr1 (27-79)||(25803226-25803278)


Alignment Details
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 89 - 231
Target Start/End: Original strand, 23915210 - 23915348
Alignment:
Q  89 tgaggagaatgaagaagagacgttacttagggttcttaatttataggcattatgatgcagtaccnnnnnnnnaaggacttcactcagtcaaaataagtca 188  Q
    ||||||||||| |||| ||||||||    |||||||||||||||||||||||| ||||||||||        ||||||||||||||||||||||||||||    
T  23915210 tgaggagaatggagaatagacgtta----gggttcttaatttataggcattataatgcagtaccttttttttaaggacttcactcagtcaaaataagtca 23915305  T
Q  189 atgaatgtagtcagaaagaaattcattcaccattaatattctt 231  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  23915306 atgaatgtagtcagaaagaaattcattcaccattaatattctt 23915348  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 23915125 - 23915185
Alignment:
Q  27 ataaagatcattgaaatggtgagcaaaatggataaataagttgaagatgccattttctctt 87  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  23915125 ataaagatcattgaaatggtgagcaaaatggataaataggttgaagatgccattttctctt 23915185  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 23922776 - 23922834
Alignment:
Q  29 aaagatcattgaaatggtgagcaaaatggataaataagttgaagatgccattttctctt 87  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  23922776 aaagatcattgaaatggtgagcaaaatggataaataggctgaagatgccattttctctt 23922834  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 89 - 152
Target Start/End: Original strand, 23922872 - 23922935
Alignment:
Q  89 tgaggagaatgaagaagagacgttacttagggttcttaatttataggcattatgatgcagtacc 152  Q
    |||||||| || |||||||||||||||||||||||||||| |||||||||||| ||| ||||||    
T  23922872 tgaggagagtggagaagagacgttacttagggttcttaatatataggcattataatgtagtacc 23922935  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 23922954 - 23923014
Alignment:
Q  171 ctcagtcaaaataagtcaatgaatgtagtcagaaagaaattcattcaccattaatattctt 231  Q
    |||| ||||||| ||| |||||||||||||||||| ||||  | |||||||||||||||||    
T  23922954 ctcaatcaaaatgagttaatgaatgtagtcagaaacaaataaagtcaccattaatattctt 23923014  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 25803226 - 25803278
Alignment:
Q  27 ataaagatcattgaaatggtgagcaaaatggataaataagttgaagatgccat 79  Q
    ||||| ||||||||||||||||||||||  |||||||| ||||||| ||||||    
T  25803226 ataaacatcattgaaatggtgagcaaaaatgataaatatgttgaaggtgccat 25803278  T

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