View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_213 (Length: 245)
Name: NF8905A_low_213
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_213 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 49472353 - 49472575
Alignment:
| Q |
1 |
tcacaaaatggtaaaatgaacgggtgagggcataacaaatacattatcacatataagcaggtggtaagtgatataacctggtaggttgtgacaacaagct |
100 |
Q |
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| T |
49472353 |
tcacaaaatggtaaaatgaacgggtgagggcataacaaatacattatcacatataagcaggtggtaagtgatataacctggtaggttgtgacaacaagct |
49472452 |
T |
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| Q |
101 |
ccacagtttttgggtcaaatttcccacttatgttacaggtacccaaggagtaaatccatgtaagttttctgtgctttgttttagttgaataaaattcttt |
200 |
Q |
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| T |
49472453 |
ccacggtttttgggtcaaatttcccacttatgttacaggtacccaaggagtaaatccatgtaagttttctgtgctttgttttagttgaataaaattcttt |
49472552 |
T |
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| Q |
201 |
gaaaacttcaacgcacttaacct |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
49472553 |
gaaaacttcaacgcacttaacct |
49472575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 71 - 223
Target Start/End: Original strand, 14673426 - 14673578
Alignment:
| Q |
71 |
atataacctggtaggttgtgacaacaagctccacagtttttgggtcaaatttcccacttatgttacaggtacccaaggagtaaatccatgtaagttttct |
170 |
Q |
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||||||||||||| || || |||| || |||| ||||||||| ||||||||||||||||| || |||||||||||||| |||||||| ||||||||||| |
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| T |
14673426 |
atataacctggtaagtagtcacaatcagttccatagtttttggttcaaatttcccacttatattgcaggtacccaaggaataaatccaagtaagttttct |
14673525 |
T |
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| Q |
171 |
gtgctttgttttagttgaataaaattctttgaaaacttcaacgcacttaacct |
223 |
Q |
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| T |
14673526 |
gtgcttagtttttgtttgataaaactccttgaaaacttctacacacttaacct |
14673578 |
T |
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