View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8905A_low_22 (Length: 408)
Name: NF8905A_low_22
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_22 |
 | |
|
| [»] scaffold0034 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 7926881 - 7927278
Alignment:
| Q |
1 |
aaaatcaaaataaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacagtga |
100 |
Q |
| |
|
||||||| |||| ||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||| || || | |||||||||| |
|
|
| T |
7926881 |
aaaatcataatagccaggcatatcttgccaacacttcaacagacgcaccggtctcggaccccaattctcttcatccacagacaatacgataggacagtga |
7926980 |
T |
|
| Q |
101 |
tcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtc |
200 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
7926981 |
tcagataaacctcttaagtgtgccacctgaatgcagttaggccacaccaaacaccattcttcagagagcaagaacctatccaatctactcatcgagcgtc |
7927080 |
T |
|
| Q |
201 |
catcccccttataccaagtaaactttctcccacataacggtaggtcaatcaaaactctatcttcaataaaatcattaaaaggtgcacaatcatcagccac |
300 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
7927081 |
catcccccttaaaccaagtaaacttcctcccacataaaggtaaatcaatcaaaactctatcttcaataaaatcattaaaaggtgcacaatcatccaccaa |
7927180 |
T |
|
| Q |
301 |
ctgagaacccctaaccgaacgcctttcttcgacagaccgcaccgtgttaaaatccccgcaaacacaaacctttttattccctaaagaaagcaacctcg |
398 |
Q |
| |
|
|||||| || ||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7927181 |
ctgagaccctctaaccgaacgcctttcttcgactgaccgcacagtgttgaaatccccgcaaacacaaaccttgttattccctaaagaaagcaacctcg |
7927278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 8302299 - 8302697
Alignment:
| Q |
1 |
aaaatcaaaataaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacagtga |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||| || |||| ||||||| ||||||||| ||||||||||||||||||||||| ||||| | ||||| ||| |
|
|
| T |
8302299 |
aaaatcattataaccaggcatatcttgccaacatttcaggagacgcaccggtctcggcccccaattctcttcatccacagacaacacaatgggacaatga |
8302398 |
T |
|
| Q |
101 |
tcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtc |
200 |
Q |
| |
|
|||||||| |||||||| || || | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
8302399 |
tcagataaacctcttaactgagctatctgaatgcaattaggccacaccatacaccattcttcagagagcaagaacctatccaacctactcatcgaacgac |
8302498 |
T |
|
| Q |
201 |
catcccccttataccaagtaaactttctcccacataacggtaggtcaatcaaaactctatcttcaataaaatcattaaaaggtgcacaatcatcagccac |
300 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| || ||||| ||||||||||||| |||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
8302499 |
catcccccttataccaagtaaacttcctcccacttagcggtaaatcaatcaaaactcgatcttcaataaaatcattaaaaggtgcacaatcagctaccac |
8302598 |
T |
|
| Q |
301 |
ctgagaacccctaaccgaacgcctttcttcgacagaccgcaccgtgttaaaatccccgcaaacacaaacctttttattccctaaagaaagcaacctcga |
399 |
Q |
| |
|
|||||||||||||||||| ||||||||||| || |||||||| ||||||||||| || |||||||| || || ||||| |||||||||||||||||||| |
|
|
| T |
8302599 |
ctgagaacccctaaccgaccgcctttcttcaactgaccgcacagtgttaaaatctccacaaacacacactttattattacctaaagaaagcaacctcga |
8302697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 41663012 - 41662822
Alignment:
| Q |
1 |
aaaatcaaaataaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacagtga |
100 |
Q |
| |
|
||||||| |||| |||||||||||||||| || |||| |||||||| | ||||||| ||||||||||||||||||||||| ||||| | ||| |||||| |
|
|
| T |
41663012 |
aaaatcattataatcaggcatatcttgccaacatttcagtagacgcaccagtctcggcccccaattctcttcatccacagacaacacaatagggcagtga |
41662913 |
T |
|
| Q |
101 |
tcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactca |
191 |
Q |
| |
|
| ||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41662912 |
ttagataatcctcttaactgagccacctgaatgcaattaggccataccaaacaccattcttcagagagcaagaacctatccaacctactca |
41662822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 13877118 - 13876878
Alignment:
| Q |
11 |
taaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacagtgatcagataatc |
110 |
Q |
| |
|
|||||||||||||||||||| || ||||||| |||| || |||||| ||||| || || ||||| || || ||||| | |||||| ||||| || | | |
|
|
| T |
13877118 |
taaccaggcatatcttgccaacatttcaataatcgcaacg-tctcggcccccagttttcctcatctaccgacaacacaataggacaatgatctgaaagac |
13877020 |
T |
|
| Q |
111 |
ctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtccatccccctt |
210 |
Q |
| |
|
| ||||| || | |||||||| ||||| ||||||| ||| ||||| |||| || | ||| ||||| |||||||||||||| || || ||||||||||| |
|
|
| T |
13877019 |
cccttaagtgaccaacctgaatacaatttggccacaacaagcaccacgcttcggataacaaaaacctgtccaacctactcatagatcgaccatccccctt |
13876920 |
T |
|
| Q |
211 |
ataccaagtaaactttctcccacataacggtaggtcaatcaa |
252 |
Q |
| |
|
| |||| |||||||||| |||||||| |||| |||||||| |
|
|
| T |
13876919 |
aaaccaggtaaactttcggccacataaaggtaaatcaatcaa |
13876878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 20826796 - 20827014
Alignment:
| Q |
1 |
aaaatcaaaataaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacagtga |
100 |
Q |
| |
|
||||||| |||||||||||| |||||||| || |||| ||||||| ||| ||| | |||||||| |||||||| || || ||||| | ||||| ||| |
|
|
| T |
20826796 |
aaaatcattataaccaggcatgtcttgccaacatttcagaagacgcaacggcctcagtccccaattttcttcatctactgacaacacaatcggacaatga |
20826895 |
T |
|
| Q |
101 |
tcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtc |
200 |
Q |
| |
|
| ||| | || | || || || ||||| || |||||||||||||||| |||||| |||| || | ||| || ||||||||||| |||||||| || | |
|
|
| T |
20826896 |
ttagacagaccccgtagatgagcaacctgcatacaattaggccacaccagacaccaaccttctgacaacaaaaatctatccaacctgctcatcgaccgcc |
20826995 |
T |
|
| Q |
201 |
catcccccttataccaagt |
219 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
20826996 |
catcccccttaaaccaagt |
20827014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0034 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: scaffold0034
Description:
Target: scaffold0034; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 103487 - 103090
Alignment:
| Q |
1 |
aaaatcaaaataaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacagtga |
100 |
Q |
| |
|
||||||| |||| ||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||| || |||| ||||||||| |
|
|
| T |
103487 |
aaaatcataatagccaggcatatcttgccaacacttcaacagacgcaccggtctcggaccccaattctcttcatccacagacaatactataggacagtgg |
103388 |
T |
|
| Q |
101 |
tcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtc |
200 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
103387 |
tcagataaacctcttaagtgtgccacctgaatgcagttgggccacaccaaacaccattcttcagagagcaagaacctatccaatctactcatcgagcgtc |
103288 |
T |
|
| Q |
201 |
catcccccttataccaagtaaactttctcccacataacggtaggtcaatcaaaactctatcttcaataaaatcattaaaaggtgcacaatcatcagccac |
300 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
103287 |
catcccccttaaaccaagtaaacttcctcccacataatggtaaatcaatcaaaactctatcttcaataaaatcattaaaaggtgcacaatcatccaccaa |
103188 |
T |
|
| Q |
301 |
ctgagaacccctaaccgaacgcctttcttcgacagaccgcaccgtgttaaaatccccgcaaacacaaacctttttattccctaaagaaagcaacctcg |
398 |
Q |
| |
|
|||||| || ||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
103187 |
ctgagatcctctaaccgaacgcctttcttcgactgaccgcacagtgttgaaatccccgcaaacacaaaccttgttattccctaaagaaagcaacctcg |
103090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 4935772 - 4935375
Alignment:
| Q |
1 |
aaaatcaaaataaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacagtga |
100 |
Q |
| |
|
||||||| ||| ||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||| ||||| || |||| |||||||||| |
|
|
| T |
4935772 |
aaaatcatcatagccaggcatatcttgccaacacttcaacagacgcaccggtctcggaccccaattctcttcatctacagacaaaactataggacagtga |
4935673 |
T |
|
| Q |
101 |
tcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtc |
200 |
Q |
| |
|
|||||||| |||| ||| ||||||||||||||||| || |||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||| | |
|
|
| T |
4935672 |
tcagataaacctcgtaaatgtgccacctgaatgcagttcggccacaccagacaccattcttcagaaagcaagaacctatccaatctactcatcgaacgac |
4935573 |
T |
|
| Q |
201 |
catcccccttataccaagtaaactttctcccacataacggtaggtcaatcaaaactctatcttcaataaaatcattaaaaggtgcacaatcatcagccac |
300 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4935572 |
catcccccttaaaccaagtaaacttcctcccacataaaggtaaatcaatcaaaactctatcttcaataaaatcattaaaaggtgcacaatcatccaccaa |
4935473 |
T |
|
| Q |
301 |
ctgagaacccctaaccgaacgcctttcttcgacagaccgcaccgtgttaaaatccccgcaaacacaaacctttttattccctaaagaaagcaacctcg |
398 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||| ||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4935472 |
ctgagaacctctaaccgaacgcctttcttcgactgaccgcacagtgttgaaatccccacaaacacaaaccttgttattccctaaagaaagcaacctcg |
4935375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 29970470 - 29970868
Alignment:
| Q |
1 |
aaaatcaaaataaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacagtga |
100 |
Q |
| |
|
||||||| |||||| |||||||||||||| || |||| ||||||| ||||||||| ||||||||||| ||||||||||| ||||| | ||||| ||| |
|
|
| T |
29970470 |
aaaatcagtataacctggcatatcttgccaacatttcaggagacgcaccggtctcggcccccaattctcctcatccacagacaacacaatgggacaatga |
29970569 |
T |
|
| Q |
101 |
tcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtc |
200 |
Q |
| |
|
|||||||| |||||||| || || ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||| | |
|
|
| T |
29970570 |
tcagataaacctcttaactgagctacctgaatgcaattaggccacaccatacaccattcttcagaaagcaagaacctatccaacctactcatcaaacgac |
29970669 |
T |
|
| Q |
201 |
catcccccttataccaagtaaactttctcccacataacggtaggtcaatcaaaactctatcttcaataaaatcattaaaaggtgcacaatcatcagccac |
300 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| || ||||| ||||||||||||| |||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
29970670 |
catcccccttataccaagtaaacttcctcccacttagcggtaaatcaatcaaaactcgatcttcaataaaatcattaaaaggtgcacaatcagctaccac |
29970769 |
T |
|
| Q |
301 |
ctgagaacccctaaccgaacgcctttcttcgacagaccgcaccgtgttaaaatccccgcaaacacaaacctttttattccctaaagaaagcaacctcga |
399 |
Q |
| |
|
||||||||||||||| || ||||||||||| || |||||||| ||||||||||| || |||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
29970770 |
ctgagaacccctaactgaccgcctttcttcaactgaccgcacagtgttaaaatctccacaaacacaaaccttattattacctaaagaaagcaacctcga |
29970868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 17723131 - 17723535
Alignment:
| Q |
1 |
aaaatcaaaataaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacagtga |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||| || ||||| ||||||| ||| | |||||||||||||| ||||||||||| || || | ||| || ||| |
|
|
| T |
17723131 |
aaaatcactataaccaggcatatcttgccaacatttcaaaagacgcaccggccgcggaccccaattcttttcatccacagtcaagacaatagggcaatga |
17723230 |
T |
|
| Q |
101 |
tcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtc |
200 |
Q |
| |
|
||||||||||||||||| || || ||||||| ||| |||||||||||| |||||||||||||| ||||||||||| ||||| ||||||||||||| | |
|
|
| T |
17723231 |
tcagataatcctcttaactgagcaacctgaagacaagtaggccacaccatgcaccattcttcagatagcaagaacctgtccaatgtactcatcgaacggc |
17723330 |
T |
|
| Q |
201 |
catcccccttataccaagtaaactttctcccacataacggtaggtcaatcaaaactctatcttcaataaaatcattaaaaggtgcacaatcatcagccac |
300 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
17723331 |
catccccattataccaagtaaacttcctcccacataacggtaaattaattaaaactctatcttcaataaaatcattaaaaggtgcacaatcatcaaccac |
17723430 |
T |
|
| Q |
301 |
ctgagaacccctaaccgaacgcctttcttcgacagaccgcaccgtgttaaaatccccgcaaacacaaacctttttattccctaaagaaagcaacctcgat |
400 |
Q |
| |
|
||||||||||||||| || |||||||| || || |||||||| || ||||||||||| || ||||||||||| || | |||||||||||||||||||| |
|
|
| T |
17723431 |
ctgagaacccctaacagagcgcctttcatcaactgaccgcacagtattaaaatccccacacacacaaaccttactactacctaaagaaagcaacctcgaa |
17723530 |
T |
|
| Q |
401 |
gaaag |
405 |
Q |
| |
|
||||| |
|
|
| T |
17723531 |
gaaag |
17723535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 92 - 156
Target Start/End: Original strand, 17058105 - 17058169
Alignment:
| Q |
92 |
ggacagtgatcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacacca |
156 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||| |
|
|
| T |
17058105 |
ggacaatgatcagataatcctcgcaattgtgccacctgaatacaattcggccacaccaagcacca |
17058169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 253
Target Start/End: Original strand, 20658463 - 20658663
Alignment:
| Q |
53 |
ctcggaccccaattctcttcatccacagataacactaaaggacagtgatcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaac |
152 |
Q |
| |
|
||||| ||||||||||| | ||| |||||||| | || ||||| ||||| || || ||||| | ||| || |||||||||||||| ||||| || |||| |
|
|
| T |
20658463 |
ctcggcccccaattctccttatcaacagataaaatcaacggacaatgatctgacaaacctctaagttgcgcaacctgaatgcaattgggccaaactaaac |
20658562 |
T |
|
| Q |
153 |
accattcttcagagagcaagaacctatccaacctactcatcgaacgtccatcccccttataccaagtaaactttctcccacataacggtaggtcaatcaa |
252 |
Q |
| |
|
|||| |||| || | || |||| ||| | ||||||||||| | ||| ||||| || |||||||||| || |||||||| |||||||| |||||||| |
|
|
| T |
20658563 |
accactctttcgaaataaaaaaccgatcaattctactcatcgatcttccgtcccctttgaaccaagtaaaattactcccacacaacggtagatcaatcaa |
20658662 |
T |
|
| Q |
253 |
a |
253 |
Q |
| |
|
| |
|
|
| T |
20658663 |
a |
20658663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 165
Target Start/End: Original strand, 8773394 - 8773504
Alignment:
| Q |
55 |
cggaccccaattctcttcatccacagataacactaaaggacagtgatcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacac |
154 |
Q |
| |
|
|||||||||||| ||||||||||| || | | ||||||||||| | |||||| |||| ||| || || || ||||| ||||| |||||||| || ||| |
|
|
| T |
8773394 |
cggaccccaattttcttcatccaccgacagaatcaaaggacagtggttagataaacctcgtaaatgagcgacttgaatacaattcggccacactaagcac |
8773493 |
T |
|
| Q |
155 |
cattcttcaga |
165 |
Q |
| |
|
|| |||||||| |
|
|
| T |
8773494 |
caatcttcaga |
8773504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 19917876 - 19917471
Alignment:
| Q |
1 |
aaaatcaaaataaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacagtga |
100 |
Q |
| |
|
||||||| || |||| |||||||||||| | |||||||| ||||||| ||||||||||||||| ||||||||||||||||| || |||| |||||| ||| |
|
|
| T |
19917876 |
aaaatcataaaaacccggcatatcttgctaacacttcaacagacgcaccggtctcggaccccagttctcttcatccacagacaatactataggacaatga |
19917777 |
T |
|
| Q |
101 |
tcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtc |
200 |
Q |
| |
|
|||||||| |||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
19917776 |
tcagataagcctcttaagtgtgccacctgaacacaattaggccacaccaaacaccaatcttcagagagcaagaacctatccaacctactcatcgaacggc |
19917677 |
T |
|
| Q |
201 |
catcccccttataccaagtaaactttctcccacataacggtaggtcaatcaaaactctatcttcaataaaatcattaaaaggtgcacaatcatcagccac |
300 |
Q |
| |
|
||| ||||||| ||||||||||||| |||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||| || ||| |
|
|
| T |
19917676 |
cattccccttaaaccaagtaaacttcctcccacataacggtaaatcaatcaagcctctatcttcaataaagtcattaaaaggtgcacaatcctctaccaa |
19917577 |
T |
|
| Q |
301 |
ctgagaacccctaaccgaacgcctttcttcgacagaccgcaccgtgttaaaatccccgcaaacacaaacctttttattccctaaagaaagcaacctcgat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| |||||||||||||| |||||||||||||| || |||||||| |
|
|
| T |
19917576 |
ctgagaacccctaaccgaacgcctttcttcaacagaccgcacagtgttgaaatccccacaaacacaaaccttgttattccctaaagagagtaacctcgaa |
19917477 |
T |
|
| Q |
401 |
gaaagt |
406 |
Q |
| |
|
|||||| |
|
|
| T |
19917476 |
gaaagt |
19917471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 111 - 398
Target Start/End: Original strand, 2366815 - 2367102
Alignment:
| Q |
111 |
ctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtccatccccctt |
210 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
2366815 |
ctcttaagtgtgccacctgaatgcagttaggccacaccaaacaccattcttcagagagcaagaacctatccaatctactcatcgagcgtccatccccctt |
2366914 |
T |
|
| Q |
211 |
ataccaagtaaactttctcccacataacggtaggtcaatcaaaactctatcttcaataaaatcattaaaaggtgcacaatcatcagccacctgagaaccc |
310 |
Q |
| |
|
| ||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
2366915 |
aaaccaagtaaacttcctcccacataatggtaaatcaatcaaaactctatcttcaataaaatcattaaaaggtgcacaatcatccaccaactgagaacct |
2367014 |
T |
|
| Q |
311 |
ctaaccgaacgcctttcttcgacagaccgcaccgtgttaaaatccccgcaaacacaaacctttttattccctaaagaaagcaacctcg |
398 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2367015 |
ctaaccgaacgcctttcttcgactgaccgcacagtgttgaaatccccacaaacacaaaccttgttattccctaaagaaagcaacctcg |
2367102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 161
Target Start/End: Complemental strand, 10620258 - 10620147
Alignment:
| Q |
50 |
ggtctcggaccccaattctcttcatccacagataacactaaaggacagtgatcagataatcctcttaattgtgccacctgaatgcaattaggccacacca |
149 |
Q |
| |
|
||||||||||||||||| || ||||||||||| || || |||||| | ||||| |||||||||| || || || | || | |||||||||||||| || |
|
|
| T |
10620258 |
ggtctcggaccccaattttcctcatccacagacaaaaccaaaggataatgatccaataatcctctcaactgcgcaatttgtaagcaattaggccacaaca |
10620159 |
T |
|
| Q |
150 |
aacaccattctt |
161 |
Q |
| |
|
||||||| |||| |
|
|
| T |
10620158 |
aacaccactctt |
10620147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 107 - 242
Target Start/End: Complemental strand, 21738454 - 21738319
Alignment:
| Q |
107 |
aatcctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtccatccc |
206 |
Q |
| |
|
||||||||||| || |||||||||| ||||||||||| ||||| |||||| || || | ||| |||| || |||| ||||||||| | ||||||| |
|
|
| T |
21738454 |
aatcctcttaactgagccacctgaagaaaattaggccacctcaaaccccattcctccgaaatcaaaaaccggtctaaccgactcatcgacctaccatccc |
21738355 |
T |
|
| Q |
207 |
ccttataccaagtaaactttctcccacataacggta |
242 |
Q |
| |
|
| || |||||||||| |||| ||||||||||||| |
|
|
| T |
21738354 |
ctttgaaccaagtaaattttcggccacataacggta |
21738319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 47421300 - 47421697
Alignment:
| Q |
1 |
aaaatcaaaataaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacagtga |
100 |
Q |
| |
|
||||||| ||| ||||||||||| ||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||| || |||| |||||||||| |
|
|
| T |
47421300 |
aaaatcatcatagccaggcatatcgtgccaacacttcaacagacgcaccggtctcggaccccaattctcttcatccacagacaaaactataggacagtga |
47421399 |
T |
|
| Q |
101 |
tcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtc |
200 |
Q |
| |
|
|||||||| |||| ||| ||||||||||||||||| || |||||||||| ||||||||||||||| ||||||||||| ||||| |||||||||||||| | |
|
|
| T |
47421400 |
tcagataaacctcgtaaatgtgccacctgaatgcagttcggccacaccatacaccattcttcagaaagcaagaacctgtccaatctactcatcgaacgac |
47421499 |
T |
|
| Q |
201 |
catcccccttataccaagtaaactttctcccacataacggtaggtcaatcaaaactctatcttcaataaaatcattaaaaggtgcacaatcatcagccac |
300 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||| |||| ||||||||||| ||||||||||||||||||| ||| |||||||||||||| ||| |
|
|
| T |
47421500 |
catcccccttaaaccaagtaaacttcctcccacataaaggtaaatcaatcaaaaccctatcttcaataaaatcatgaaagggtgcacaatcatccaccaa |
47421599 |
T |
|
| Q |
301 |
ctgagaacccctaaccgaacgcctttcttcgacagaccgcaccgtgttaaaatccccgcaaacacaaacctttttattccctaaagaaagcaacctcg |
398 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||| ||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
47421600 |
ctgagaacctctaaccgaacgcctttcttcgactgaccgcacagtgttgaaatccccacaaacacaaaccttgttattccctaaagaaagcaacctcg |
47421697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 167 - 398
Target Start/End: Original strand, 45716483 - 45716714
Alignment:
| Q |
167 |
agcaagaacctatccaacctactcatcgaacgtccatcccccttataccaagtaaactttctcccacataacggtaggtcaatcaaaactctatcttcaa |
266 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||| ||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
45716483 |
agcaagaacctatccaatctactcatcgagcgtccatcccccttaaaccaagtaaacttcctcccacataaaggtaaatcaatcaaaactctatcttcaa |
45716582 |
T |
|
| Q |
267 |
taaaatcattaaaaggtgcacaatcatcagccacctgagaacccctaaccgaacgcctttcttcgacagaccgcaccgtgttaaaatccccgcaaacaca |
366 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |
|
|
| T |
45716583 |
taaaatcattaaaaggtgcacaatcatccaccaactgagaacctctaaccgaacgcctttcttcgactgaccgcacagtgttgaaatccccgcaaacaca |
45716682 |
T |
|
| Q |
367 |
aacctttttattccctaaagaaagcaacctcg |
398 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |
|
|
| T |
45716683 |
aaccttgttattccctaaagaaagcaacctcg |
45716714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 23240877 - 23241282
Alignment:
| Q |
1 |
aaaatcaaaataaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacagtga |
100 |
Q |
| |
|
|||||||| |||||| |||||||||||||| || |||| ||||||| ||||||||| ||||||||||||||||||||||| |||| | ||||| ||| |
|
|
| T |
23240877 |
aaaatcaatataacctggcatatcttgccaacatttcagaagacgcaccggtctcggcccccaattctcttcatccacagacaacaaaatgggacaatga |
23240976 |
T |
|
| Q |
101 |
tcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtc |
200 |
Q |
| |
|
||||||||||||||||| || || ||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||| |||||||| || | |
|
|
| T |
23240977 |
tcagataatcctcttaactgagctacctgaatgcaattaggccacaccatacaccattctacagaaagcaagaacctatccaacctcctcatcgagcgac |
23241076 |
T |
|
| Q |
201 |
catcccccttataccaagtaaactttctcccacataacggtaggtcaatcaaaactctatcttcaataaaatcattaaaaggtgcacaatcatcagccac |
300 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||| |||| ||| ||||||||||||| |||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
23241077 |
catcccccttaaaccaagtaaacttcctcccacttaacagtaaatcaatcaaaactcgatcttcaataaaatcattaaaaggtgtgcaatcatctaccac |
23241176 |
T |
|
| Q |
301 |
ctgagaacccctaaccgaacgcctttcttcgacagaccgcaccgtgttaaaatccccgcaaacacaaacctttttattccctaaagaaagcaacctcgat |
400 |
Q |
| |
|
||| |||||||||||||||||||||||||| || |||||||| ||||||||||| || |||||||||||||| ||||| | |||||||||||||||||| |
|
|
| T |
23241177 |
ctgggaacccctaaccgaacgcctttcttcaactgaccgcacagtgttaaaatctccacaaacacaaaccttattattacataaagaaagcaacctcgac |
23241276 |
T |
|
| Q |
401 |
gaaagt |
406 |
Q |
| |
|
|||||| |
|
|
| T |
23241277 |
gaaagt |
23241282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 11 - 323
Target Start/End: Original strand, 33172164 - 33172476
Alignment:
| Q |
11 |
taaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacagtgatcagataatc |
110 |
Q |
| |
|
||||||||||| || ||| |||| ||||| | |||| |||||||| |||||||| | |||||| || || || | | |||||| ||||| || | | |
|
|
| T |
33172164 |
taaccaggcatgtcctgctagcatttcaacaaccgcaaaggtctcggcccccaattttgttcatcaactgacaataaaataggacaatgatccgagagcc |
33172263 |
T |
|
| Q |
111 |
ctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtccatccccctt |
210 |
Q |
| |
|
| ||||| || || |||||||| ||||||||||| | | |||||| |||||||||||||| ||||| ||||| | |||||||||||| ||||| || || |
|
|
| T |
33172264 |
cccttaactgagctacctgaatacaattaggccataactgacaccactcttcagagagcaaaaacctgtccaaacgactcatcgaacgcccatctccttt |
33172363 |
T |
|
| Q |
211 |
ataccaagtaaactttctcccacataacggtaggtcaatcaaaactctatcttcaataaaatcattaaaaggtgcacaatcatcagccacctgagaaccc |
310 |
Q |
| |
|
||||| || ||||||| |||| | |||| |||| ||||| | || ||||||||||||||||| |||||| ||||||| || |||||||| || |
|
|
| T |
33172364 |
gtaccacgtgaactttcgaccacccagaggtaaatcaactaaaacacactcatcaataaaatcattaaacggtgcataatcatctgcaacctgagaccct |
33172463 |
T |
|
| Q |
311 |
ctaaccgaacgcc |
323 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
33172464 |
cgaaccgaacgcc |
33172476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 25855083 - 25854848
Alignment:
| Q |
1 |
aaaatcaaaataaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacagtga |
100 |
Q |
| |
|
||||||| |||||||||||| |||||||| || |||| ||||||| ||| ||||| |||||||| |||||||| || || ||||| | |||| ||| |
|
|
| T |
25855083 |
aaaatcattataaccaggcatgtcttgccaacatttcagaagacgcaacggcctcggtccccaattttcttcatctactgacaacacgacctgacaatga |
25854984 |
T |
|
| Q |
101 |
tcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtc |
200 |
Q |
| |
|
||||| | || | | || || ||||| || |||||||||||||||| |||||| |||| || | |||||| ||||||||||| |||||| | || | |
|
|
| T |
25854983 |
tcagacagaccccgaagatgagcaacctgcatacaattaggccacaccagacaccaaccttctgacaacaagaatctatccaacctgctcatcaaccgcc |
25854884 |
T |
|
| Q |
201 |
catcccccttataccaagtaaactttctcccacata |
236 |
Q |
| |
|
||||||||||| ||||||| || || | |||||||| |
|
|
| T |
25854883 |
catcccccttaaaccaagtgaatttccgcccacata |
25854848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 17603978 - 17603755
Alignment:
| Q |
1 |
aaaatcaaaataaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacagtga |
100 |
Q |
| |
|
||||||| |||||||||||| ||||||||||| |||| ||||||| ||| |||| ||| |||| |||||||| || || ||||| | ||||| ||| |
|
|
| T |
17603978 |
aaaatcattataaccaggcatgtcttgccagcatttcagaagacgcaacggcctcgt-ccctaattttcttcatctactgacaacacaatcggacaatga |
17603880 |
T |
|
| Q |
101 |
tcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtc |
200 |
Q |
| |
|
||||| | | ||||| || || ||||| || | ||||||||||| || |||||| |||| || | || |||||||||||||||||||||||||| | |
|
|
| T |
17603879 |
tcagacagaacccttaaatgagcaacctgcatactattaggccacaacagacaccaaccttctgacaacacaaacctatccaacctactcatcgaacgcc |
17603780 |
T |
|
| Q |
201 |
catcccccttataccaagtaaactt |
225 |
Q |
| |
|
||||||||||| ||||||||||||| |
|
|
| T |
17603779 |
catcccccttaaaccaagtaaactt |
17603755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 17555818 - 17555600
Alignment:
| Q |
1 |
aaaatcaaaataaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacagtga |
100 |
Q |
| |
|
||||||| |||||||||||| |||||||| || |||| ||||||| ||| ||||| |||||||| |||||||| || || ||||| | ||||| ||| |
|
|
| T |
17555818 |
aaaatcattataaccaggcatgtcttgccaacatttcagaagacgcaacggcctcggtccccaattttcttcatctactgacaacacaaccggacaatga |
17555719 |
T |
|
| Q |
101 |
tcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtc |
200 |
Q |
| |
|
||||| | || | || || || ||||| || |||||||||||||||| |||||| |||| || | |||||| ||||||||||| |||||||| | | |
|
|
| T |
17555718 |
tcagacagaccccgtagatgagcaacctgcatacaattaggccacaccagacaccaaccttctgacaacaagaatctatccaacctgctcatcgaccacc |
17555619 |
T |
|
| Q |
201 |
catcccccttataccaagt |
219 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
17555618 |
catcccccttaaaccaagt |
17555600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 18680151 - 18680081
Alignment:
| Q |
134 |
caattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtccatc |
204 |
Q |
| |
|
||||||||||| | |||||||||||||| ||||||||| ||||| |||| ||||||||| ||||| ||||| |
|
|
| T |
18680151 |
caattaggccataacaaacaccattcttaagagagcaaaaacctgtccagcctactcattgaacgcccatc |
18680081 |
T |
|
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Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 59 - 195
Target Start/End: Complemental strand, 9666592 - 9666456
Alignment:
| Q |
59 |
ccccaattctcttcatccacagataacactaaaggacagtgatcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacaccatt |
158 |
Q |
| |
|
|||||||| || ||||||||||| | ||| || ||||| ||||| || || |||||||| || |||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
9666592 |
ccccaattttcctcatccacagacagcaccaacggacaatgatccgacaaacctcttaactgagccacctgaatgcaattaggccacttcaaaccccatt |
9666493 |
T |
|
| Q |
159 |
cttcagagagcaagaacctatccaacctactcatcga |
195 |
Q |
| |
|
| ||||||| ||| |||| ||||| | ||||||||| |
|
|
| T |
9666492 |
cctcagagatcaaaaaccggtccaaacgactcatcga |
9666456 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 165
Target Start/End: Complemental strand, 28398140 - 28398030
Alignment:
| Q |
55 |
cggaccccaattctcttcatccacagataacactaaaggacagtgatcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacac |
154 |
Q |
| |
|
|||||||||||| ||||||||||| || | | ||||||||||| |||||||| |||| || || || || ||||| ||||| |||||||| || ||| |
|
|
| T |
28398140 |
cggaccccaattttcttcatccaccgacagaatcaaaggacagtggtcagataaacctcgcaaatgagcgacttgaatacaatttggccacactaagcac |
28398041 |
T |
|
| Q |
155 |
cattcttcaga |
165 |
Q |
| |
|
|| |||||||| |
|
|
| T |
28398040 |
cagtcttcaga |
28398030 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 59 - 195
Target Start/End: Original strand, 39432840 - 39432976
Alignment:
| Q |
59 |
ccccaattctcttcatccacagataacactaaaggacagtgatcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacaccatt |
158 |
Q |
| |
|
|||||||| || ||||||||||| | ||| || ||||| ||||| || || |||||||| || |||||||||||||||||||||||| ||||| | ||| |
|
|
| T |
39432840 |
ccccaattttcctcatccacagacagcaccaacggacaatgatccgacaaacctcttaactgagccacctgaatgcaattaggccacttcaaaccctatt |
39432939 |
T |
|
| Q |
159 |
cttcagagagcaagaacctatccaacctactcatcga |
195 |
Q |
| |
|
| ||||||| ||| |||| ||||| | ||||||||| |
|
|
| T |
39432940 |
cctcagagatcaaaaaccggtccaaacgactcatcga |
39432976 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 203
Target Start/End: Original strand, 9137748 - 9137930
Alignment:
| Q |
21 |
tatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacagtgatcagataatcctcttaattg |
120 |
Q |
| |
|
|||||||||| || ||||| ||||||| || | ||| ||||||||||| | ||| ||||| ||| | | |||||| ||||||||||| || ||||| || |
|
|
| T |
9137748 |
tatcttgccaacatttcaagagacgcacaggacgcggcccccaattctcattatcaacagacaactcgataggacaatgatcagataaaccccttaaatg |
9137847 |
T |
|
| Q |
121 |
tgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtccat |
203 |
Q |
| |
|
|| |||||| ||||| ||||||| || |||||||||| | || |||| ||||| ||||| |||||||||||||| |||| |
|
|
| T |
9137848 |
agcagcctgaacacaatttggccacaacagacaccattctcctgaaagcagaaacctgtccaatctactcatcgaacgaccat |
9137930 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 59 - 167
Target Start/End: Original strand, 20798186 - 20798294
Alignment:
| Q |
59 |
ccccaattctcttcatccacagataacactaaaggacagtgatcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacaccatt |
158 |
Q |
| |
|
|||||||| || ||||||| ||| | ||| || ||||| ||||| || || |||||||| || |||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
20798186 |
ccccaattttcctcatccaaagacagcaccaacggacaatgatccgacaaacctcttaactgagccacctgaatgcaattaggccacttcaaaccccatt |
20798285 |
T |
|
| Q |
159 |
cttcagaga |
167 |
Q |
| |
|
| ||||||| |
|
|
| T |
20798286 |
cctcagaga |
20798294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 98 - 156
Target Start/End: Original strand, 21412851 - 21412909
Alignment:
| Q |
98 |
tgatcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacacca |
156 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||| ||||| ||||||||||| ||||| |
|
|
| T |
21412851 |
tgatcatataatcctctcaattgtgccacctgaatacaattcggccacaccaagcacca |
21412909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 156
Target Start/End: Complemental strand, 22189377 - 22189271
Alignment:
| Q |
50 |
ggtctcggaccccaattctcttcatccacagataacactaaaggacagtgatcagataatcctcttaattgtgccacctgaatgcaattaggccacacca |
149 |
Q |
| |
|
||||| ||||||||||| || ||||| || || || | || ||||| |||||||||||||||| ||||| ||||||||||| ||||| |||||||||| |
|
|
| T |
22189377 |
ggtcttggaccccaattttcctcatcaactgacaaaagcaagggacaatgatcagataatcctcgcaattgagccacctgaatacaattcggccacacca |
22189278 |
T |
|
| Q |
150 |
aacacca |
156 |
Q |
| |
|
| ||||| |
|
|
| T |
22189277 |
agcacca |
22189271 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 242
Target Start/End: Complemental strand, 47620586 - 47620478
Alignment:
| Q |
134 |
caattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtccatcccccttataccaagtaaactttctcccac |
233 |
Q |
| |
|
||||| ||||||| || |||||||||| | || ||||| || | ||||| |||||||||||||| |||| |||||| ||||||| ||||| | |||| |
|
|
| T |
47620586 |
caatttggccacaacagacaccattctcccgaaagcaaaaatttgtccaatctactcatcgaacgaccattccccttgaaccaagtgaacttccgaccac |
47620487 |
T |
|
| Q |
234 |
ataacggta |
242 |
Q |
| |
|
| ||||||| |
|
|
| T |
47620486 |
acaacggta |
47620478 |
T |
|
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