View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_223 (Length: 243)
Name: NF8905A_low_223
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_223 |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 6 - 230
Target Start/End: Complemental strand, 1411136 - 1410912
Alignment:
| Q |
6 |
atgagatggacatcagaagctcttcctgatatgtttccaaagaagcttattccattaggaggttgaacacttgtatatgttgcatatatagttccagtat |
105 |
Q |
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|||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||| |||||||||||| |||||| |||| |
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| T |
1411136 |
atgagacggccatcagaagctcttcctgatatgtttccaaagaagcttattccgttaggagattgaacacctgtaaatgttgcatatacagttccggtat |
1411037 |
T |
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| Q |
106 |
ctgaatttgagtcaccaaagttataaattgcagggtacacacatttgctagagttactattgccattcttctcacttgagacttgaataaatgtacatgc |
205 |
Q |
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| T |
1411036 |
ccgaatttgaatcaccaaagttataaattgcagggtacacacatttgctagagttactattgccattcttctcacttgagacttgaataaatgtacatgc |
1410937 |
T |
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| Q |
206 |
cacataaagattgaaacaccaaagt |
230 |
Q |
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||||||||||||||||||||||||| |
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| T |
1410936 |
cacataaagattgaaacaccaaagt |
1410912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 6 - 152
Target Start/End: Complemental strand, 1414512 - 1414366
Alignment:
| Q |
6 |
atgagatggacatcagaagctcttcctgatatgtttccaaagaagcttattccattaggaggttgaacacttgtatatgttgcatatatagttccagtat |
105 |
Q |
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| T |
1414512 |
atgagacggccatcagaagctcttcctgatatgtttccaaagaagcttattccattaggaggttgaacacttgtatatgttgcatatatagttccagtat |
1414413 |
T |
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| Q |
106 |
ctgaatttgagtcaccaaagttataaattgcagggtacacacatttg |
152 |
Q |
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| T |
1414412 |
ctgaatttgagtcaccaaagttataaattgcagggtacacacatttg |
1414366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 6 - 150
Target Start/End: Complemental strand, 1420058 - 1419917
Alignment:
| Q |
6 |
atgagatggacatcagaagctcttcctgatatgtttccaaagaagcttattccattaggaggttgaacacttgtatatgttgcatatatagttccagtat |
105 |
Q |
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| T |
1420058 |
atgagacggccatcagaagctctccctgatatgtttccaaag---cttatgccattaggaggttgattacataagaaagttgcatatgcagttccagtat |
1419962 |
T |
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| Q |
106 |
ctgaatttgagtcaccaaagttataaattgcagggtacacacatt |
150 |
Q |
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| T |
1419961 |
ctgaatttgagtcaccaaagttataaattgcagggtacacacatt |
1419917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 151
Target Start/End: Complemental strand, 1408244 - 1408109
Alignment:
| Q |
16 |
catcagaagctcttcctgatatgtttccaaagaagcttattccattaggaggttgaacacttgtatatgttgcatatatagttccagtatctgaatttga |
115 |
Q |
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| T |
1408244 |
catcagaagctcttcctgtggtgcttccaaagtagcttataccattaggaggcgtaacagctgtgtatattgcatttgctgctccagtatctgaatttga |
1408145 |
T |
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| Q |
116 |
gtcaccaaagttataaattgcagggtacacacattt |
151 |
Q |
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| T |
1408144 |
gtcaccaaaattgtaaattgcagggtactcacattt |
1408109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 1419912 - 1419861
Alignment:
| Q |
179 |
acttgagacttgaataaatgtacatgccacataaagattgaaacaccaaagt |
230 |
Q |
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| T |
1419912 |
acttgaaacttgaataaatgtacatgtcacatacaggttgaaacaccaaagt |
1419861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 1414365 - 1414312
Alignment:
| Q |
177 |
tcacttgagacttgaataaatgtacatgccacataaagattgaaacaccaaagt |
230 |
Q |
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| T |
1414365 |
tcacttgaaacttgaataaatttacatgtcacatacaggttgaaacaccaaagt |
1414312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 151
Target Start/End: Complemental strand, 3600632 - 3600507
Alignment:
| Q |
26 |
tcttcctgatatgtttccaaagaagcttattccattaggaggttgaacacttgtatatgttgcatatatagttccagtatctgaatttgagtcaccaaag |
125 |
Q |
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| T |
3600632 |
tcttcctgagatgcttccaaagaagcttataccattaggatgctcaacagctgccattgttgcatatccagctccagtatctgaattggagtcaccaaag |
3600533 |
T |
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| Q |
126 |
ttataaattgcagggtacacacattt |
151 |
Q |
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| T |
3600532 |
ttgtatattgctgggtagacacattt |
3600507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 151
Target Start/End: Complemental strand, 14339499 - 14339374
Alignment:
| Q |
26 |
tcttcctgatatgtttccaaagaagcttattccattaggaggttgaacacttgtatatgttgcatatatagttccagtatctgaatttgagtcaccaaag |
125 |
Q |
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||||||||| ||| |||||||||||||||| ||||||||| | |||| || |||||||||| || ||||||||||||||| |||||||||||| |
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| T |
14339499 |
tcttcctgagatgcttccaaagaagcttataccattaggatactcaacagctgccgttgttgcatatccagctccagtatctgaattggagtcaccaaag |
14339400 |
T |
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| Q |
126 |
ttataaattgcagggtacacacattt |
151 |
Q |
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|| || ||||| ||||| |||||||| |
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| T |
14339399 |
ttgtatattgctgggtagacacattt |
14339374 |
T |
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