View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_225 (Length: 243)
Name: NF8905A_low_225
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_225 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 28411087 - 28411322
Alignment:
| Q |
1 |
atggacatcagacatgacactgatatgtggttgctggtaataatttgaaaaagtggaaatatttgagtataaccgcatgtatcgatgtcagacgatgaca |
100 |
Q |
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| T |
28411087 |
atggacatcagacatgacactgatatgtggttgctggtaataatttgaaaaagtggaaatatttgagtataaccgcatgtatcgatgtcagacgatgaca |
28411186 |
T |
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| Q |
101 |
tatatgagagagctacattgagcaggaaatactagcaagagatagatgtatgcagaacaagattgttatcaacaattacttcacgagaaatcggattatg |
200 |
Q |
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| T |
28411187 |
tatatgagagtgctacattgagcaggaaatactagcaagagatagatgtatgcagaacaagattgttatcgacaattacttcacgagaaatcggattatg |
28411286 |
T |
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| Q |
201 |
gaataccaggacagaatactaaaatactaacaccaa |
236 |
Q |
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|||||||||||||||||||||||||||||| ||||| |
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| T |
28411287 |
gaataccaggacagaatactaaaatactaataccaa |
28411322 |
T |
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