View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_226 (Length: 243)
Name: NF8905A_low_226
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_226 |
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Alignment Details
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 17944103 - 17944185
Alignment:
| Q |
142 |
atatgataacaaatgcttaaagttaacaagttctaataatatacatatttgtaaagaaaatactgaagtcttccctgcatttt |
224 |
Q |
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| T |
17944103 |
atatgataacaaatgcttaaagttaacaaattctaacaatatacatatttgtaaagaaaatactgaagtcttccctgcatttt |
17944185 |
T |
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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 45
Target Start/End: Original strand, 17943949 - 17943980
Alignment:
| Q |
14 |
ctagatgccatattatatttgatttgcattac |
45 |
Q |
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| T |
17943949 |
ctagatgccatattatatttgatttgcattac |
17943980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 218
Target Start/End: Complemental strand, 13664124 - 13664090
Alignment:
| Q |
184 |
acatatttgtaaagaaaatactgaagtcttccctg |
218 |
Q |
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| T |
13664124 |
acatatttgtaaagaaaatactgaagtcttccctg |
13664090 |
T |
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