View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8905A_low_229 (Length: 242)

Name: NF8905A_low_229
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8905A_low_229
NF8905A_low_229
[»] chr8 (14 HSPs)
chr8 (7-210)||(22504279-22504482)
chr8 (159-200)||(37141378-37141419)
chr8 (158-210)||(41324134-41324186)
chr8 (159-197)||(8717477-8717515)
chr8 (161-199)||(14279571-14279609)
chr8 (159-200)||(6109190-6109231)
chr8 (160-197)||(24838172-24838209)
chr8 (160-197)||(26799206-26799243)
chr8 (162-199)||(30694439-30694476)
chr8 (160-196)||(12714373-12714409)
chr8 (153-197)||(20665365-20665409)
chr8 (153-197)||(30550728-30550772)
chr8 (164-200)||(39138997-39139033)
chr8 (153-197)||(44215477-44215521)
[»] chr7 (13 HSPs)
chr7 (160-210)||(48103663-48103713)
chr7 (161-209)||(5963817-5963865)
chr7 (158-197)||(6023329-6023368)
chr7 (159-197)||(4905297-4905335)
chr7 (159-197)||(19416535-19416573)
chr7 (160-209)||(44406846-44406895)
chr7 (158-210)||(19626514-19626566)
chr7 (153-197)||(20763169-20763213)
chr7 (153-197)||(29488735-29488779)
chr7 (153-197)||(33232399-33232443)
chr7 (153-197)||(34284541-34284585)
chr7 (158-210)||(46737805-46737857)
chr7 (159-195)||(47342698-47342734)
[»] chr6 (11 HSPs)
chr6 (153-197)||(2681696-2681740)
chr6 (160-209)||(26356071-26356120)
chr6 (153-197)||(33976259-33976303)
chr6 (153-196)||(31895303-31895346)
chr6 (159-197)||(8629698-8629736)
chr6 (161-199)||(19265524-19265562)
chr6 (160-198)||(30579881-30579919)
chr6 (160-197)||(12735245-12735282)
chr6 (159-192)||(24269904-24269937)
chr6 (159-200)||(32053809-32053850)
chr6 (153-197)||(247674-247718)
[»] scaffold0021 (1 HSPs)
scaffold0021 (159-197)||(161162-161200)
[»] chr3 (18 HSPs)
chr3 (153-210)||(7202905-7202963)
chr3 (155-209)||(44675767-44675821)
chr3 (161-202)||(7626458-7626499)
chr3 (159-196)||(32037035-32037072)
chr3 (161-197)||(42886511-42886547)
chr3 (151-197)||(39779036-39779083)
chr3 (158-197)||(48796220-48796259)
chr3 (159-202)||(50037332-50037375)
chr3 (159-197)||(25340926-25340964)
chr3 (160-197)||(8127485-8127522)
chr3 (159-196)||(54018409-54018446)
chr3 (153-197)||(916454-916498)
chr3 (161-197)||(3695684-3695720)
chr3 (160-196)||(10926491-10926527)
chr3 (159-207)||(33745120-33745168)
chr3 (162-210)||(41030189-41030237)
chr3 (164-200)||(42276397-42276433)
chr3 (160-200)||(47536479-47536519)
[»] chr1 (13 HSPs)
chr1 (153-210)||(15668512-15668570)
chr1 (153-197)||(23203336-23203381)
chr1 (159-197)||(1605417-1605455)
chr1 (162-200)||(2596939-2596977)
chr1 (162-200)||(5503764-5503802)
chr1 (159-197)||(8736456-8736494)
chr1 (159-197)||(40735007-40735045)
chr1 (159-197)||(48100743-48100781)
chr1 (164-197)||(13778587-13778620)
chr1 (159-200)||(16967193-16967234)
chr1 (160-197)||(27533265-27533302)
chr1 (160-197)||(29739359-29739396)
chr1 (160-200)||(17669667-17669707)
[»] chr5 (11 HSPs)
chr5 (161-202)||(18789059-18789100)
chr5 (162-210)||(43135024-43135072)
chr5 (159-198)||(10704332-10704371)
chr5 (159-193)||(11637578-11637612)
chr5 (162-200)||(27903137-27903175)
chr5 (160-210)||(34191455-34191505)
chr5 (159-197)||(38495163-38495201)
chr5 (153-197)||(5551283-5551328)
chr5 (153-197)||(6345053-6345097)
chr5 (159-195)||(18331728-18331764)
chr5 (153-197)||(37462126-37462170)
[»] chr2 (14 HSPs)
chr2 (153-209)||(4833252-4833309)
chr2 (161-210)||(11551191-11551240)
chr2 (153-210)||(22709099-22709157)
chr2 (159-193)||(24305311-24305345)
chr2 (159-200)||(14735892-14735933)
chr2 (153-197)||(3708708-3708752)
chr2 (153-197)||(11868664-11868708)
chr2 (160-196)||(20120724-20120760)
chr2 (161-197)||(20990906-20990942)
chr2 (153-197)||(21929485-21929529)
chr2 (153-197)||(35360057-35360101)
chr2 (160-196)||(36474784-36474820)
chr2 (161-197)||(41356175-41356211)
chr2 (158-210)||(42791315-42791367)
[»] chr4 (18 HSPs)
chr4 (159-199)||(16584949-16584989)
chr4 (160-208)||(25783440-25783488)
chr4 (159-202)||(28435245-28435288)
chr4 (158-201)||(30847980-30848023)
chr4 (159-197)||(9946448-9946486)
chr4 (159-197)||(22040671-22040709)
chr4 (159-197)||(39171372-39171410)
chr4 (159-197)||(43374274-43374312)
chr4 (162-200)||(48226716-48226754)
chr4 (161-202)||(17423174-17423215)
chr4 (158-202)||(675938-675982)
chr4 (161-197)||(1737184-1737220)
chr4 (153-197)||(10261771-10261815)
chr4 (153-197)||(21562640-21562684)
chr4 (159-199)||(22411785-22411825)
chr4 (153-197)||(24079842-24079886)
chr4 (153-197)||(26926712-26926756)
chr4 (153-197)||(43330161-43330205)


Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 7 - 210
Target Start/End: Complemental strand, 22504482 - 22504279
Alignment:
Q  7 aattttcggttcaaaacatacaaatatagtatattttaaagatatcttataggtaaactctagtttgcatcaatttgaagcgtctcttcttaatgacact 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22504482 aattttcggttcaaaacatacaaatatagtatattttaaagatatcttataggtaaactctagtttgcatcaatttgaagcgtctcttcttaatgacact 22504383  T
Q  107 gctttatcttttaattgaattagattagatgtgtgtcctcgttacggttggttggacaatgcataaaatatgcagggttcggggttcaaactccagtcac 206  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||    
T  22504382 gctttatcttttaattgaattagattagatgtgtgtcctcgtgacggttggttggacaatgcataaaatatgcaaggttcggggttcaaactccgatcac 22504283  T
Q  207 tacc 210  Q
    ||||    
T  22504282 tacc 22504279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 37141378 - 37141419
Alignment:
Q  159 tggacaatgcataaaatatgcagggttcggggttcaaactcc 200  Q
    |||||||||||||| ||||||| |||||||||||||||||||    
T  37141378 tggacaatgcataatatatgcaaggttcggggttcaaactcc 37141419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 41324134 - 41324186
Alignment:
Q  158 ttggacaatgcataaaatatgcagggttcggggttcaaactccagtcactacc 210  Q
    ||||||||||||||||||||||| |||||| ||||||||  || |||||||||    
T  41324134 ttggacaatgcataaaatatgcaaggttcgaggttcaaatcccggtcactacc 41324186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 197
Target Start/End: Complemental strand, 8717515 - 8717477
Alignment:
Q  159 tggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    |||||||||||||| ||||||| ||||||||||||||||    
T  8717515 tggacaatgcataatatatgcaaggttcggggttcaaac 8717477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 14279609 - 14279571
Alignment:
Q  161 gacaatgcataaaatatgcagggttcggggttcaaactc 199  Q
    |||||||||||||||||||| |||||||||||| |||||    
T  14279609 gacaatgcataaaatatgcaaggttcggggttcgaactc 14279571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 6109190 - 6109231
Alignment:
Q  159 tggacaatgcataaaatatgcagggttcggggttcaaactcc 200  Q
    ||||||||||||||||||| || |||||| ||||||||||||    
T  6109190 tggacaatgcataaaatatacaaggttcgtggttcaaactcc 6109231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 197
Target Start/End: Complemental strand, 24838209 - 24838172
Alignment:
Q  160 ggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  24838209 ggacaatgcataaaatatgcaaggtccggggttcaaac 24838172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 26799206 - 26799243
Alignment:
Q  160 ggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  26799206 ggacaatgcataaaatatgcaaggttcggggttaaaac 26799243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 30694476 - 30694439
Alignment:
Q  162 acaatgcataaaatatgcagggttcggggttcaaactc 199  Q
    ||||||||||||||||||| ||||||||||| ||||||    
T  30694476 acaatgcataaaatatgcaaggttcggggtttaaactc 30694439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 12714409 - 12714373
Alignment:
Q  160 ggacaatgcataaaatatgcagggttcggggttcaaa 196  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  12714409 ggacaatgcataatatatgcaaggttcggggttcaaa 12714373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 20665409 - 20665365
Alignment:
Q  153 gttggttggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    |||||| ||||||||||||||||||||| ||| ||| ||||||||    
T  20665409 gttggtaggacaatgcataaaatatgcaaggtccggagttcaaac 20665365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 30550772 - 30550728
Alignment:
Q  153 gttggttggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    |||||| ||||||||||||||||||||| ||| ||| ||||||||    
T  30550772 gttggtaggacaatgcataaaatatgcaaggtccggagttcaaac 30550728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 39139033 - 39138997
Alignment:
Q  164 aatgcataaaatatgcagggttcggggttcaaactcc 200  Q
    ||||||||||||||| | |||||||||||||||||||    
T  39139033 aatgcataaaatatgtaaggttcggggttcaaactcc 39138997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 44215521 - 44215477
Alignment:
Q  153 gttggttggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    |||||| ||||||||||||||||||||| ||| ||| ||||||||    
T  44215521 gttggtaggacaatgcataaaatatgcaaggtccggagttcaaac 44215477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 48103713 - 48103663
Alignment:
Q  160 ggacaatgcataaaatatgcagggttcggggttcaaactccagtcactacc 210  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  48103713 ggacaatgcataaaatatgcaaggttcggggttcaaactccagccactacc 48103663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 5963865 - 5963817
Alignment:
Q  161 gacaatgcataaaatatgcagggttcggggttcaaactccagtcactac 209  Q
    |||||||||||||||||||| |||||||||||||||  |||| ||||||    
T  5963865 gacaatgcataaaatatgcaaggttcggggttcaaatcccagccactac 5963817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 197
Target Start/End: Original strand, 6023329 - 6023368
Alignment:
Q  158 ttggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    ||||||||||| ||||||||||| ||||||||||||||||    
T  6023329 ttggacaatgcttaaaatatgcaaggttcggggttcaaac 6023368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 197
Target Start/End: Original strand, 4905297 - 4905335
Alignment:
Q  159 tggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  4905297 tggacaatgcataaaatatgcaaggttcggagttcaaac 4905335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 197
Target Start/End: Original strand, 19416535 - 19416573
Alignment:
Q  159 tggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    |||||||||||||||||||||| ||| ||||||||||||    
T  19416535 tggacaatgcataaaatatgcaaggtccggggttcaaac 19416573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 44406895 - 44406846
Alignment:
Q  160 ggacaatgcataaaatatgcagggttcggggttcaaactccagtcactac 209  Q
    ||||||||||||||||||||| ||| || |||||||| |||| |||||||    
T  44406895 ggacaatgcataaaatatgcaaggtccgaggttcaaattccaatcactac 44406846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 19626566 - 19626514
Alignment:
Q  158 ttggacaatgcataaaatatgcagggttcggggttcaaactccagtcactacc 210  Q
    ||||||||||||||| ||||||| ||| |||||||||||| || | |||||||    
T  19626566 ttggacaatgcataatatatgcaaggtccggggttcaaacaccggccactacc 19626514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 20763169 - 20763213
Alignment:
Q  153 gttggttggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    |||||| ||||||||||||||||||||| ||| ||| ||||||||    
T  20763169 gttggtaggacaatgcataaaatatgcaaggtccggagttcaaac 20763213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 29488735 - 29488779
Alignment:
Q  153 gttggttggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    |||||| ||||||||||||||||||||| ||| ||| ||||||||    
T  29488735 gttggtaggacaatgcataaaatatgcaaggtccggagttcaaac 29488779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 33232443 - 33232399
Alignment:
Q  153 gttggttggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    |||||| ||||||||||||||||||||| ||| ||| ||||||||    
T  33232443 gttggtaggacaatgcataaaatatgcaaggtccggagttcaaac 33232399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 34284585 - 34284541
Alignment:
Q  153 gttggttggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    |||||| ||||||||||||||||||||| ||| ||| ||||||||    
T  34284585 gttggtaggacaatgcataaaatatgcaaggtccggagttcaaac 34284541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 46737805 - 46737857
Alignment:
Q  158 ttggacaatgcataaaatatgcagggttcggggttcaaactccagtcactacc 210  Q
    ||||||||||||||| ||||||| ||| |||||||||||| || | |||||||    
T  46737805 ttggacaatgcataatatatgcaaggtccggggttcaaacaccggccactacc 46737857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 47342698 - 47342734
Alignment:
Q  159 tggacaatgcataaaatatgcagggttcggggttcaa 195  Q
    |||||||||||||||||||||| |||| |||||||||    
T  47342698 tggacaatgcataaaatatgcaaggtttggggttcaa 47342734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 2681740 - 2681696
Alignment:
Q  153 gttggttggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||    
T  2681740 gttggttggacaatgcatcaaatatgcaaggttcggggttcaaac 2681696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 26356120 - 26356071
Alignment:
Q  160 ggacaatgcataaaatatgcagggttcggggttcaaactccagtcactac 209  Q
    ||||||||||||| ||||||| ||||||||||||||||||| | ||||||    
T  26356120 ggacaatgcataatatatgcaaggttcggggttcaaactccggccactac 26356071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 33976259 - 33976303
Alignment:
Q  153 gttggttggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    |||||| ||||||||||||||||||||| ||| ||||||||||||    
T  33976259 gttggtaggacaatgcataaaatatgcaaggtccggggttcaaac 33976303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 196
Target Start/End: Original strand, 31895303 - 31895346
Alignment:
Q  153 gttggttggacaatgcataaaatatgcagggttcggggttcaaa 196  Q
    |||||||||||||||||| ||||||||| || ||||||||||||    
T  31895303 gttggttggacaatgcatcaaatatgcaaggctcggggttcaaa 31895346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 197
Target Start/End: Complemental strand, 8629736 - 8629698
Alignment:
Q  159 tggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    |||||||||||||| ||||||| ||||||||||||||||    
T  8629736 tggacaatgcataatatatgcaaggttcggggttcaaac 8629698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 19265562 - 19265524
Alignment:
Q  161 gacaatgcataaaatatgcagggttcggggttcaaactc 199  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  19265562 gacaatgcataaaatatgcaaggtccggggttcaaactc 19265524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 30579881 - 30579919
Alignment:
Q  160 ggacaatgcataaaatatgcagggttcggggttcaaact 198  Q
    ||||||||||||||||||||| |||| ||||||||||||    
T  30579881 ggacaatgcataaaatatgcaaggtttggggttcaaact 30579919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 197
Target Start/End: Complemental strand, 12735282 - 12735245
Alignment:
Q  160 ggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  12735282 ggacaatgcataaaatatgcaaggtttggggttcaaac 12735245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 192
Target Start/End: Original strand, 24269904 - 24269937
Alignment:
Q  159 tggacaatgcataaaatatgcagggttcggggtt 192  Q
    |||||||||||||||||||||| |||||||||||    
T  24269904 tggacaatgcataaaatatgcaaggttcggggtt 24269937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 32053809 - 32053850
Alignment:
Q  159 tggacaatgcataaaatatgcagggttcggggttcaaactcc 200  Q
    |||||||||||||| ||||||| |||||| ||||||||||||    
T  32053809 tggacaatgcataatatatgcaaggttcgtggttcaaactcc 32053850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 247674 - 247718
Alignment:
Q  153 gttggttggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    |||||| ||||||||||||||||||||| ||| ||| ||||||||    
T  247674 gttggtaggacaatgcataaaatatgcaaggtccggagttcaaac 247718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 197
Target Start/End: Original strand, 161162 - 161200
Alignment:
Q  159 tggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  161162 tggacaatgcataaaatatgcaaggttcggggttcaaac 161200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 7202963 - 7202905
Alignment:
Q  153 gttggttgga-caatgcataaaatatgcagggttcggggttcaaactccagtcactacc 210  Q
    |||||||||| |||||||||||||||||| ||||| |||||||||| || |||||||||    
T  7202963 gttggttggaacaatgcataaaatatgcaaggttcagggttcaaaccccggtcactacc 7202905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 209
Target Start/End: Original strand, 44675767 - 44675821
Alignment:
Q  155 tggttggacaatgcataaaatatgcagggttcggggttcaaactccagtcactac 209  Q
    |||||||||||||||| ||||||||| |||||||||||||||  | |||||||||    
T  44675767 tggttggacaatgcatcaaatatgcaaggttcggggttcaaatcctagtcactac 44675821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 7626499 - 7626458
Alignment:
Q  161 gacaatgcataaaatatgcagggttcggggttcaaactccag 202  Q
    |||||||||||||||||||| ||| |||||||||||||||||    
T  7626499 gacaatgcataaaatatgcaaggtccggggttcaaactccag 7626458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 196
Target Start/End: Complemental strand, 32037072 - 32037035
Alignment:
Q  159 tggacaatgcataaaatatgcagggttcggggttcaaa 196  Q
    |||||||||||||||||||||||||| |||||||||||    
T  32037072 tggacaatgcataaaatatgcagggtacggggttcaaa 32037035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 42886547 - 42886511
Alignment:
Q  161 gacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    |||||||||||||||||||| ||||||||||||||||    
T  42886547 gacaatgcataaaatatgcaaggttcggggttcaaac 42886511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 197
Target Start/End: Original strand, 39779036 - 39779083
Alignment:
Q  151 cggttggt-tggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    |||||||| |||||||||||||| ||||||| ||||||||||||||||    
T  39779036 cggttggtatggacaatgcataatatatgcaaggttcggggttcaaac 39779083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 197
Target Start/End: Complemental strand, 48796259 - 48796220
Alignment:
Q  158 ttggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    ||||||||||||||| ||||||| ||||||||||||||||    
T  48796259 ttggacaatgcataagatatgcaaggttcggggttcaaac 48796220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 202
Target Start/End: Original strand, 50037332 - 50037375
Alignment:
Q  159 tggacaatgcataaaatatgcagggttcggggttcaaactccag 202  Q
    ||||||||||||||  |||||| |||||||||||||||||||||    
T  50037332 tggacaatgcataatgtatgcaaggttcggggttcaaactccag 50037375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 197
Target Start/End: Complemental strand, 25340964 - 25340926
Alignment:
Q  159 tggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    |||||||||||||||||||||| ||| ||||||||||||    
T  25340964 tggacaatgcataaaatatgcaaggtccggggttcaaac 25340926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 8127485 - 8127522
Alignment:
Q  160 ggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  8127485 ggacaatgcataaaatatgcaaggtttggggttcaaac 8127522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 196
Target Start/End: Complemental strand, 54018446 - 54018409
Alignment:
Q  159 tggacaatgcataaaatatgcagggttcggggttcaaa 196  Q
    |||||||||||||||||||||| ||||| |||||||||    
T  54018446 tggacaatgcataaaatatgcaaggttcagggttcaaa 54018409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 916454 - 916498
Alignment:
Q  153 gttggttggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    |||||| ||||||||||||||||||||| ||| ||| ||||||||    
T  916454 gttggtaggacaatgcataaaatatgcaaggtccggagttcaaac 916498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 3695720 - 3695684
Alignment:
Q  161 gacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    |||||||||||||||||| | ||||||||||||||||    
T  3695720 gacaatgcataaaatatgaaaggttcggggttcaaac 3695684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 10926491 - 10926527
Alignment:
Q  160 ggacaatgcataaaatatgcagggttcggggttcaaa 196  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  10926491 ggacaatgcataatatatgcaaggttcggggttcaaa 10926527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 33745120 - 33745168
Alignment:
Q  159 tggacaatgcataaaatatgcagggttcggggttcaaactccagtcact 207  Q
    |||||||||||||||||||||| |||  ||||||||||| |||| ||||    
T  33745120 tggacaatgcataaaatatgcaaggtctggggttcaaaccccagccact 33745168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 41030189 - 41030237
Alignment:
Q  162 acaatgcataaaatatgcagggttcggggttcaaactccagtcactacc 210  Q
    ||||| ||||||||||||| |||| | |||||||||||| |||||||||    
T  41030189 acaatacataaaatatgcaaggtttgaggttcaaactccggtcactacc 41030237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 42276433 - 42276397
Alignment:
Q  164 aatgcataaaatatgcagggttcggggttcaaactcc 200  Q
    |||| |||||||||||| |||||||||||||||||||    
T  42276433 aatgtataaaatatgcaaggttcggggttcaaactcc 42276397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 47536519 - 47536479
Alignment:
Q  160 ggacaatgcataaaatatgcagggttcggggttcaaactcc 200  Q
    ||||||||||||||||||||| ||| || ||||||||||||    
T  47536519 ggacaatgcataaaatatgcaaggtccgaggttcaaactcc 47536479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 15668512 - 15668570
Alignment:
Q  153 gttggttgga-caatgcataaaatatgcagggttcggggttcaaactccagtcactacc 210  Q
    |||||||||| |||||||||||||||||| ||| |||||||||||| |||| |||||||    
T  15668512 gttggttggaacaatgcataaaatatgcaaggtccggggttcaaaccccagccactacc 15668570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 23203336 - 23203381
Alignment:
Q  153 gttggttgga-caatgcataaaatatgcagggttcggggttcaaac 197  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||    
T  23203336 gttggttggaacaatgcataaaatatgcaaggttcggggttcaaac 23203381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 197
Target Start/End: Original strand, 1605417 - 1605455
Alignment:
Q  159 tggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    |||||||||||||||||||||| ||| ||||||||||||    
T  1605417 tggacaatgcataaaatatgcaaggtccggggttcaaac 1605455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 2596977 - 2596939
Alignment:
Q  162 acaatgcataaaatatgcagggttcggggttcaaactcc 200  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  2596977 acaatgcataaaatatgcaaggtccggggttcaaactcc 2596939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 5503802 - 5503764
Alignment:
Q  162 acaatgcataaaatatgcagggttcggggttcaaactcc 200  Q
    |||||||||||||||| || |||||||||||||||||||    
T  5503802 acaatgcataaaatatacaaggttcggggttcaaactcc 5503764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 197
Target Start/End: Original strand, 8736456 - 8736494
Alignment:
Q  159 tggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    |||||||||||||||||||||| ||| ||||||||||||    
T  8736456 tggacaatgcataaaatatgcaaggtccggggttcaaac 8736494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 197
Target Start/End: Complemental strand, 40735045 - 40735007
Alignment:
Q  159 tggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  40735045 tggacaatgcataaaatatgtaaggttcggggttcaaac 40735007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 197
Target Start/End: Original strand, 48100743 - 48100781
Alignment:
Q  159 tggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    |||||||||||||||||||||| |||| |||||||||||    
T  48100743 tggacaatgcataaaatatgcaaggtttggggttcaaac 48100781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 13778587 - 13778620
Alignment:
Q  164 aatgcataaaatatgcagggttcggggttcaaac 197  Q
    ||||||||||||||||| ||||||||||||||||    
T  13778587 aatgcataaaatatgcaaggttcggggttcaaac 13778620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 200
Target Start/End: Complemental strand, 16967234 - 16967193
Alignment:
Q  159 tggacaatgcataaaatatgcagggttcggggttcaaactcc 200  Q
    |||||||||||||| ||||||| |||||| ||||||||||||    
T  16967234 tggacaatgcataatatatgcaaggttcgaggttcaaactcc 16967193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 27533265 - 27533302
Alignment:
Q  160 ggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    ||||||||||||| ||||||| ||||||||||||||||    
T  27533265 ggacaatgcataatatatgcaaggttcggggttcaaac 27533302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 29739359 - 29739396
Alignment:
Q  160 ggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  29739359 ggacaatgcataaaatatgcaaggtccggggttcaaac 29739396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 17669667 - 17669707
Alignment:
Q  160 ggacaatgcataaaatatgcagggttcggggttcaaactcc 200  Q
    |||||||| |||| ||||||| |||||||||||||||||||    
T  17669667 ggacaatgtataatatatgcaaggttcggggttcaaactcc 17669707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 18789059 - 18789100
Alignment:
Q  161 gacaatgcataaaatatgcagggttcggggttcaaactccag 202  Q
    |||||||||||||||||||| |||||||||||||||| ||||    
T  18789059 gacaatgcataaaatatgcaaggttcggggttcaaaccccag 18789100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 43135024 - 43135072
Alignment:
Q  162 acaatgcataaaatatgcagggttcggggttcaaactccagtcactacc 210  Q
    ||||||||||||||||||| |||| ||||||||||| |||| |||||||    
T  43135024 acaatgcataaaatatgcaaggtttggggttcaaaccccagccactacc 43135072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 198
Target Start/End: Complemental strand, 10704371 - 10704332
Alignment:
Q  159 tggacaatgcataaaatatgcagggttcggggttcaaact 198  Q
    |||||||||||||||||||||| ||| |||||||||||||    
T  10704371 tggacaatgcataaaatatgcaaggtccggggttcaaact 10704332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 193
Target Start/End: Complemental strand, 11637612 - 11637578
Alignment:
Q  159 tggacaatgcataaaatatgcagggttcggggttc 193  Q
    |||||||||||||||||||||| ||||||||||||    
T  11637612 tggacaatgcataaaatatgcaaggttcggggttc 11637578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 27903137 - 27903175
Alignment:
Q  162 acaatgcataaaatatgcagggttcggggttcaaactcc 200  Q
    ||||||||||| ||||||| |||||||||||||||||||    
T  27903137 acaatgcataatatatgcaaggttcggggttcaaactcc 27903175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 34191455 - 34191505
Alignment:
Q  160 ggacaatgcataaaatatgcagggttcggggttcaaactccagtcactacc 210  Q
    ||||||||||||||||||||| ||| |||||||||||| || | |||||||    
T  34191455 ggacaatgcataaaatatgcaaggtccggggttcaaaccccggccactacc 34191505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 197
Target Start/End: Original strand, 38495163 - 38495201
Alignment:
Q  159 tggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    |||| ||||||||||||||||| ||||||||||||||||    
T  38495163 tggataatgcataaaatatgcaaggttcggggttcaaac 38495201  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 5551328 - 5551283
Alignment:
Q  153 gttggttgga-caatgcataaaatatgcagggttcggggttcaaac 197  Q
    |||||||||| |||||||||||||||||| |||| |||||||||||    
T  5551328 gttggttggaacaatgcataaaatatgcaaggtttggggttcaaac 5551283  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 6345053 - 6345097
Alignment:
Q  153 gttggttggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    ||||||||||||||||||||||||| || ||| | ||||||||||    
T  6345053 gttggttggacaatgcataaaatatacaaggtacagggttcaaac 6345097  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 18331728 - 18331764
Alignment:
Q  159 tggacaatgcataaaatatgcagggttcggggttcaa 195  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  18331728 tggacaatgcataaaatatgcaaggtccggggttcaa 18331764  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 37462126 - 37462170
Alignment:
Q  153 gttggttggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    |||||| ||||||||||||||||||||| ||| ||| ||||||||    
T  37462126 gttggtaggacaatgcataaaatatgcaaggtccggagttcaaac 37462170  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 4833252 - 4833309
Alignment:
Q  153 gttggttg-gacaatgcataaaatatgcagggttcggggttcaaactccagtcactac 209  Q
    |||||||| |||||||||||||||||||| || ||||||||||||| |||| ||||||    
T  4833252 gttggttgagacaatgcataaaatatgcaaggatcggggttcaaaccccagccactac 4833309  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 11551191 - 11551240
Alignment:
Q  161 gacaatgcataaaatatgcagggttcggggttcaaactccagtcactacc 210  Q
    |||||||||||||||||||| | ||||||||||||||||| | |||||||    
T  11551191 gacaatgcataaaatatgcaagattcggggttcaaactccggccactacc 11551240  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 22709099 - 22709157
Alignment:
Q  153 gttggttg-gacaatgcataaaatatgcagggttcggggttcaaactccagtcactacc 210  Q
    |||||||| |||||||||||||||||||| ||| |||||||||||| || | |||||||    
T  22709099 gttggttgagacaatgcataaaatatgcaaggtccggggttcaaaccccggccactacc 22709157  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 193
Target Start/End: Complemental strand, 24305345 - 24305311
Alignment:
Q  159 tggacaatgcataaaatatgcagggttcggggttc 193  Q
    |||||||||||||||||||||| ||||||||||||    
T  24305345 tggacaatgcataaaatatgcaaggttcggggttc 24305311  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 200
Target Start/End: Complemental strand, 14735933 - 14735892
Alignment:
Q  159 tggacaatgcataaaatatgcagggttcggggttcaaactcc 200  Q
    |||||||||||||||||||| | |||||| ||||||||||||    
T  14735933 tggacaatgcataaaatatgtaaggttcgaggttcaaactcc 14735892  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 3708708 - 3708752
Alignment:
Q  153 gttggttggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    |||||| ||||||||||||||||||||| ||| ||| ||||||||    
T  3708708 gttggtaggacaatgcataaaatatgcaaggtccggagttcaaac 3708752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 11868708 - 11868664
Alignment:
Q  153 gttggttggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    |||||| ||||||||||||||||||||| ||| ||| ||||||||    
T  11868708 gttggtaggacaatgcataaaatatgcaaggtccggagttcaaac 11868664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 20120760 - 20120724
Alignment:
Q  160 ggacaatgcataaaatatgcagggttcggggttcaaa 196  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  20120760 ggacaatgcataatatatgcaaggttcggggttcaaa 20120724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 20990942 - 20990906
Alignment:
Q  161 gacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  20990942 gacaatgcataaaatatgcaaggttcagggttcaaac 20990906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 21929485 - 21929529
Alignment:
Q  153 gttggttggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    ||||||||||||||||||||||||| || |||  |||||||||||    
T  21929485 gttggttggacaatgcataaaatatacaaggtcaggggttcaaac 21929529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 35360101 - 35360057
Alignment:
Q  153 gttggttggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    |||||| ||||||||||||||||||||| ||| ||| ||||||||    
T  35360101 gttggtaggacaatgcataaaatatgcaaggtccggagttcaaac 35360057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 36474784 - 36474820
Alignment:
Q  160 ggacaatgcataaaatatgcagggttcggggttcaaa 196  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  36474784 ggacaatgcataaaatatgcaaggtccggggttcaaa 36474820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 41356175 - 41356211
Alignment:
Q  161 gacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    ||||||||||||||||| || ||||||||||||||||    
T  41356175 gacaatgcataaaatatacaaggttcggggttcaaac 41356211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 42791315 - 42791367
Alignment:
Q  158 ttggacaatgcataaaatatgcagggttcggggttcaaactccagtcactacc 210  Q
    ||||||||||||||| ||||||| ||| |||||||||||| || | |||||||    
T  42791315 ttggacaatgcataatatatgcaaggtccggggttcaaaccccggccactacc 42791367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 16584989 - 16584949
Alignment:
Q  159 tggacaatgcataaaatatgcagggttcggggttcaaactc 199  Q
    |||||||||||||||||||||| ||||||| ||||||||||    
T  16584989 tggacaatgcataaaatatgcaaggttcggagttcaaactc 16584949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 25783488 - 25783440
Alignment:
Q  160 ggacaatgcataaaatatgcagggttcggggttcaaactccagtcacta 208  Q
    ||||||||||||| ||||||| ||| ||||||||||||||| |||||||    
T  25783488 ggacaatgcataatatatgcaaggtccggggttcaaactccggtcacta 25783440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 202
Target Start/End: Complemental strand, 28435288 - 28435245
Alignment:
Q  159 tggacaatgcataaaatatgcagggttcggggttcaaactccag 202  Q
    |||||||||||||| ||||||| |||||||||||||||| ||||    
T  28435288 tggacaatgcataatatatgcaaggttcggggttcaaaccccag 28435245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 201
Target Start/End: Complemental strand, 30848023 - 30847980
Alignment:
Q  158 ttggacaatgcataaaatatgcagggttcggggttcaaactcca 201  Q
    ||||||||||||||||||||||| ||| || |||||||||||||    
T  30848023 ttggacaatgcataaaatatgcaaggtccgaggttcaaactcca 30847980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 197
Target Start/End: Original strand, 9946448 - 9946486
Alignment:
Q  159 tggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    |||||||||||||||||||||| ||| ||||||||||||    
T  9946448 tggacaatgcataaaatatgcaaggtccggggttcaaac 9946486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 197
Target Start/End: Original strand, 22040671 - 22040709
Alignment:
Q  159 tggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    |||||||||||||| ||||||| ||||||||||||||||    
T  22040671 tggacaatgcataatatatgcaaggttcggggttcaaac 22040709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 197
Target Start/End: Complemental strand, 39171410 - 39171372
Alignment:
Q  159 tggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    |||||||||||||||||||||| ||||| ||||||||||    
T  39171410 tggacaatgcataaaatatgcaaggttcagggttcaaac 39171372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 197
Target Start/End: Complemental strand, 43374312 - 43374274
Alignment:
Q  159 tggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  43374312 tggacaatgcataaaatatgcaaggttcggagttcaaac 43374274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 48226716 - 48226754
Alignment:
Q  162 acaatgcataaaatatgcagggttcggggttcaaactcc 200  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  48226716 acaatgcataaaatatgcaaggtccggggttcaaactcc 48226754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 17423215 - 17423174
Alignment:
Q  161 gacaatgcataaaatatgcagggttcggggttcaaactccag 202  Q
    |||||||||||| ||||||| ||| |||||||||||||||||    
T  17423215 gacaatgcataatatatgcaaggtccggggttcaaactccag 17423174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 675938 - 675982
Alignment:
Q  158 ttggacaatgcataaaatatgcagggttcggggttcaaactccag 202  Q
    ||||||||||||||| ||||||| ||| |||||||||||| ||||    
T  675938 ttggacaatgcataatatatgcaaggtccggggttcaaaccccag 675982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 1737184 - 1737220
Alignment:
Q  161 gacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  1737184 gacaatgcataaaatatgcaaggttcggagttcaaac 1737220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 10261815 - 10261771
Alignment:
Q  153 gttggttggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    |||||| ||||||||||||||||||||| ||| ||| ||||||||    
T  10261815 gttggtaggacaatgcataaaatatgcaaggtccggagttcaaac 10261771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 21562640 - 21562684
Alignment:
Q  153 gttggttggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    |||||| ||||||||||||||||||||| ||| ||| ||||||||    
T  21562640 gttggtaggacaatgcataaaatatgcaaggtccggagttcaaac 21562684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 22411785 - 22411825
Alignment:
Q  159 tggacaatgcataaaatatgcagggttcggggttcaaactc 199  Q
    |||||||||||||| ||||| | ||||||||||||||||||    
T  22411785 tggacaatgcataatatatgtaaggttcggggttcaaactc 22411825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 24079886 - 24079842
Alignment:
Q  153 gttggttggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    |||||| ||||||||||||||||||||| ||| ||| ||||||||    
T  24079886 gttggtaggacaatgcataaaatatgcaaggtccggagttcaaac 24079842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 26926756 - 26926712
Alignment:
Q  153 gttggttggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    |||||| ||||||||||||||||||||| ||| ||| ||||||||    
T  26926756 gttggtaggacaatgcataaaatatgcaaggtccggagttcaaac 26926712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 43330161 - 43330205
Alignment:
Q  153 gttggttggacaatgcataaaatatgcagggttcggggttcaaac 197  Q
    |||||| ||||||||||||||||||||| ||| ||| ||||||||    
T  43330161 gttggtaggacaatgcataaaatatgcaaggtccggagttcaaac 43330205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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