View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8905A_low_23 (Length: 406)
Name: NF8905A_low_23
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 45481350 - 45481657
Alignment:
| Q |
1 |
atgtgctggtatgagtcttggtcttaggatggttcaacttcttacagcaacgttggctcatgcatatgattgggagttggagaatggtgtaagtccagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45481350 |
atgtgctggtatgagtcttggtcttaggatggttcaacttcttacagcaacgttggctcatgcatatgattgggagttggagaatggtgtaagtccagaa |
45481449 |
T |
|
| Q |
101 |
aagcttaatatggatgaagcatatgggctcaccttacagagagcagtgcctattttagcccatcctcgtccaaggctttcaccacatttgtacttgtaat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
45481450 |
aagcttaatatggatgaagcatatgggctcaccttacagagagcagtgcctattttagcccatcctcgtccaaggctttcacctcatttgtacttgtaat |
45481549 |
T |
|
| Q |
201 |
catcatcttttcgagtttggcttaatgccccttgtcttcatccaatcatcattctattattaaaattgtggatactctcaactttttaataaagcaagaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45481550 |
catcatcttttcgagtttggcttaatgccccttgccttcatccaatcatcgttctattattaaaattgtggatactctcaactttttaataaagcaagaa |
45481649 |
T |
|
| Q |
301 |
aagtttac |
308 |
Q |
| |
|
|||||||| |
|
|
| T |
45481650 |
aagtttac |
45481657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 346 - 402
Target Start/End: Original strand, 45481653 - 45481709
Alignment:
| Q |
346 |
tttacattacattcaagtttgcttgtaaactatgaatgggccatagaggacattttg |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
45481653 |
tttacattacattcaagtttgcttgtaaactattaatgggccatagaggacattttg |
45481709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University