View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8905A_low_233 (Length: 241)
Name: NF8905A_low_233
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_233 |
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| [»] scaffold0305 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 7 - 206
Target Start/End: Complemental strand, 36526674 - 36526475
Alignment:
| Q |
7 |
cacagacaagagaattggattagaccagtagctggggaagtgaagtgcaatgtcgatgcagcaatttttaaggattaaggatgttatggggtcggtatgt |
106 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36526674 |
cacagacaagagaagtggattagaccagtagctggggaagtgaagtgcaatgtcgacgcagcaatttttaaggattaaggatgttatggggtcggtatgt |
36526575 |
T |
|
| Q |
107 |
gtctaagaggtgatcgatgggagttcattaaagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36526574 |
gtctaagaggtgatcgatgggagttcattaaagcgaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagctagaggtctaaaagaagc |
36526475 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 7 - 234
Target Start/End: Complemental strand, 37924029 - 37923804
Alignment:
| Q |
7 |
cacagacaagagaattggattagaccagtagctggggaagtgaagtgcaatgtcgatgcagcaatttttaaggattaaggatgttatggggtcggtatgt |
106 |
Q |
| |
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||||||||| || | |||| || ||| |||| |||||||||||||||||||| |||||| ||||||||||||| |||| ||||| | |||||||||| |
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| T |
37924029 |
cacagacaaaaggagtggactaaaccggtagtcggggaagtgaagtgcaatgttgatgcaacaatttttaaggaacaaggttgtta--gagtcggtatgt |
37923932 |
T |
|
| Q |
107 |
gtctaagaggtgatcgatgggagttcattaaagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagc |
206 |
Q |
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|
|||||||||| |||||| ||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37923931 |
gtctaagaggggatcgaggggagttcattaaagcaaagacaacatagtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagc |
37923832 |
T |
|
| Q |
207 |
gataatgtggcttggtactatgaggttt |
234 |
Q |
| |
|
||||| ||||||||||| |||||||| |
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|
| T |
37923831 |
gataaaatggcttggtaccttgaggttt |
37923804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 12 - 231
Target Start/End: Original strand, 4430469 - 4430689
Alignment:
| Q |
12 |
acaagagaattggattagaccagtagctggggaagtgaagtgcaatgtcgatgcagcaatttttaaggattaaggatgttatggggtcggtatgtgtcta |
111 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4430469 |
acaagagaggtggattagaccagtagctggggaagtgaagtgcaatgttgatgcgacaatttttaaggatcaaggatgttatggggtcggtatgtgtcta |
4430568 |
T |
|
| Q |
112 |
agaggtg-atcgatgggagttcattaaagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgata |
210 |
Q |
| |
|
||||||| ||||| |||||||||| ||||||| ||| | ||||||||| ||||||||||||||||||||||| ||||| |||||||||| |||||||| |
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|
| T |
4430569 |
agaggtgtatcgagaggagttcatttaagcaaatacatcatggtacaaaagtctcccacaacccaaagaagcataagcagaaggtctaaaataagcgata |
4430668 |
T |
|
| Q |
211 |
atgtggcttggtactatgagg |
231 |
Q |
| |
|
|| ||||||| |||||||||| |
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|
| T |
4430669 |
atatggcttgatactatgagg |
4430689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 22 - 225
Target Start/End: Original strand, 23269746 - 23269949
Alignment:
| Q |
22 |
tggattagaccagtagctggggaagtgaagtgcaatgtcgatgcagcaatttttaaggattaaggatgttatggggtcggtatgtgtctaagaggtgatc |
121 |
Q |
| |
|
||||||||| | |||||| |||||||||||| |||||||| || |||| ||||||||| |||| ||||||||| | | |||||| | | ||| |||| |
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|
| T |
23269746 |
tggattagatcgttagctgcggaagtgaagtgtaatgtcgacgcgacaatctttaaggatcaaggttgttatgggattgatatgtgcttgacaggggatc |
23269845 |
T |
|
| Q |
122 |
gatgggagttcattaaagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataatgtggcttgg |
221 |
Q |
| |
|
|| |||||||||| | ||| |||||||| ||||||| ||||||| | |||||||| || || ||||||||||||||||||||||||| || ||||||||| |
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| T |
23269846 |
gaggggagttcatgagagcgaagacagcttggtacagaggtctctctcaacccaatgaggcggaagcaagaggtctaaaagaagcgagaaagtggcttgg |
23269945 |
T |
|
| Q |
222 |
tact |
225 |
Q |
| |
|
|||| |
|
|
| T |
23269946 |
tact |
23269949 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 39 - 211
Target Start/End: Original strand, 10785850 - 10786022
Alignment:
| Q |
39 |
tggggaagtgaagtgcaatgtcgatgcagcaatttttaaggattaaggatgttatggggtcggtatgtgtctaagaggtgatcgatgggagttcattaaa |
138 |
Q |
| |
|
||||||||||||||| ||||| ||| || ||||||||||||| |||| ||||||||| ||||||||||| | ||||| |||||| |||||||||||| | |
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| T |
10785850 |
tggggaagtgaagtgtaatgttgatacaacaatttttaaggaacaaggttgttatgggatcggtatgtgtttgagaggggatcgaggggagttcattaga |
10785949 |
T |
|
| Q |
139 |
gcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataa |
211 |
Q |
| |
|
|| |||||| | ||||||||||| |||||||||||||||||| | |||||||||||||||||||| |||||| |
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|
| T |
10785950 |
gcgaagacaacttggtacaaaggcatcccacaacccaaagaagtaaaagcaagaggtctaaaagaaacgataa |
10786022 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 40 - 234
Target Start/End: Complemental strand, 40728566 - 40728378
Alignment:
| Q |
40 |
ggggaagtgaagtgcaatgtcgatgcagcaatttttaaggattaaggatg---ttatggggtcggtatgtgtctaagaggtgatcgatgggagttcatta |
136 |
Q |
| |
|
||||| ||||||| |||||| |||||| |||||||||||||| ||||| | |||||||||||| ||||| |||||||| || ||||||||| |
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| T |
40728566 |
ggggaggtgaagtacaatgtagatgcaacaatttttaaggatcaaggaggcggttatggggtcggaatgtgcctaagagg------at---agttcatta |
40728476 |
T |
|
| Q |
137 |
aagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataatgtggcttggtactatgaggttt |
234 |
Q |
| |
|
||| |||||| | ||||| | |||||||| | ||||||||||||||||||||||||||||||| ||||||| || ||| |||||||| |||||||| |
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|
| T |
40728475 |
gagccaagacatcttggtatacaggtctccaataacccaaagaagcagaagcaagaggtctaaaggaagcgacaaaatggtttggtactttgaggttt |
40728378 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 91 - 211
Target Start/End: Complemental strand, 13019258 - 13019138
Alignment:
| Q |
91 |
tatggggtcggtatgtgtctaagaggtgatcgatgggagttcattaaagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaa |
190 |
Q |
| |
|
||||||||||| ||| |||| ||||| ||| || |||||||||||| || |||||| | |||| ||||| ||||||||| |||| || |||||||||| |
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|
| T |
13019258 |
tatggggtcggcatgcgtcttagaggggattgaggggagttcattagggcgaagacaacttggtttaaaggcctcccacaatccaacgaggcagaagcaa |
13019159 |
T |
|
| Q |
191 |
gaggtctaaaagaagcgataa |
211 |
Q |
| |
|
| ||| ||||||||||||||| |
|
|
| T |
13019158 |
gtggtttaaaagaagcgataa |
13019138 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 234
Target Start/End: Complemental strand, 29468749 - 29468537
Alignment:
| Q |
22 |
tggattagaccagtagctggggaagtgaagtgcaatgtcgatgcagcaattttt-aaggattaaggatgttatggggtcggtatgtgtctaagaggtgat |
120 |
Q |
| |
|
||||||||||| ||||| | || ||| | ||||||||||| |||| ||||||| |||||| || ||||||||||| || | ||||| |||||||| | |
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|
| T |
29468749 |
tggattagaccggtagccagtgaggtggattgcaatgtcgacgcagtaattttttaaggatcaatgatgttatggg-tcagaatgtgcctaagaggggtg |
29468651 |
T |
|
| Q |
121 |
cgatgggagttcattaaagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataatgtggcttg |
220 |
Q |
| |
|
||| ||||||||||| ||| |||||| | ||||| ||||||||||||||||| |||||||| ||||| ||||||||||| ||| |||| |||||||| |
|
|
| T |
29468650 |
cgaggggagttcattggagcgaagacaacttggtataaaggtctcccacaacctaaagaagcgaaagcacgaggtctaaaaaaagaaataaagtggcttg |
29468551 |
T |
|
| Q |
221 |
gtactatgaggttt |
234 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
29468550 |
gtactttgaggttt |
29468537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0305 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0305
Description:
Target: scaffold0305; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 55 - 207
Target Start/End: Complemental strand, 18998 - 18846
Alignment:
| Q |
55 |
aatgtcgatgcagcaatttttaaggattaaggatgttatggggtcggtatgtgtctaagaggtgatcgatgggagttcattaa-agcaaagacagcgtgg |
153 |
Q |
| |
|
||||||||| || ||||||| ||||| |||||||||| | |||||| |||||||| ||||| |||| | |||||| |||| ||| |||||| | ||| |
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|
| T |
18998 |
aatgtcgatacaacaatttt-aaggagtaaggatgttgttgggtcgacatgtgtcttagaggggatcaaggggagtacattgggagcgaagacaacttgg |
18900 |
T |
|
| Q |
154 |
tacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcg |
207 |
Q |
| |
|
| |||||||||||||||||||| || || ||||||||||| ||||||||||| |
|
|
| T |
18899 |
tttaaaggtctcccacaacccaatgaggcgtaagcaagaggtttaaaagaagcg |
18846 |
T |
|
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