View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_237 (Length: 240)
Name: NF8905A_low_237
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_237 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 12 - 225
Target Start/End: Complemental strand, 43139031 - 43138819
Alignment:
| Q |
12 |
tttggtgttaacaaggtatcatttgcacatgtaaagactaatacctcaagttttgtgagatctaaatggacaacaaactatcatttgagagtttgacatt |
111 |
Q |
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| T |
43139031 |
tttggtgttaacaaggtatcatttgcacatgtaaagactaatacctcaagttttgtgagatctaaatggacaacaaactatcatt-gagagtttgacatt |
43138933 |
T |
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| Q |
112 |
taaaaaatgtaattttaatatgaatgagattgaatcagagacagcaaaatcagaaaatgttggcttattttaatgaatttatgatgataaaggtcatatt |
211 |
Q |
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| T |
43138932 |
taaaaaatgtaattttaatatgaatgagattgaatcagagacagcaaaatcagaaaatgttggcttattttaatgaatttatgatgataaaggtcatatt |
43138833 |
T |
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| Q |
212 |
ctattacgatgatg |
225 |
Q |
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| T |
43138832 |
ctattacgatgatg |
43138819 |
T |
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Back To:
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 46060566 - 46060502
Alignment:
| Q |
41 |
tgtaaagactaatacctcaagttttgtgagatctaaatggacaacaaactatcatttgagagttt |
105 |
Q |
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| T |
46060566 |
tgtagagactaatatcacaagtcttatgagacccaaatggacagcaaactatcctttgagagttt |
46060502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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