View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8905A_low_24 (Length: 404)

Name: NF8905A_low_24
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8905A_low_24
NF8905A_low_24
[»] chr3 (6 HSPs)
chr3 (9-389)||(3175972-3176352)
chr3 (13-98)||(3175790-3175875)
chr3 (13-97)||(3175607-3175691)
chr3 (31-125)||(3175904-3175998)
chr3 (49-125)||(3175736-3175812)
chr3 (77-125)||(3175581-3175629)
[»] chr1 (4 HSPs)
chr1 (34-375)||(24541195-24541537)
chr1 (13-98)||(24540985-24541070)
chr1 (51-125)||(24540933-24541007)
chr1 (49-125)||(24541114-24541190)
[»] chr5 (4 HSPs)
chr5 (34-365)||(20963741-20964058)
chr5 (8-98)||(20964186-20964276)
chr5 (31-107)||(20964081-20964157)
chr5 (51-125)||(20964249-20964323)
[»] chr2 (5 HSPs)
chr2 (118-381)||(41525197-41525460)
chr2 (13-98)||(41524573-41524658)
chr2 (13-98)||(41524917-41525002)
chr2 (13-98)||(41524743-41524822)
chr2 (49-127)||(41524863-41524941)
[»] chr6 (2 HSPs)
chr6 (151-265)||(14675143-14675257)
chr6 (34-89)||(14675026-14675081)
[»] chr4 (1 HSPs)
chr4 (37-96)||(16591879-16591938)


Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 9 - 389
Target Start/End: Original strand, 3175972 - 3176352
Alignment:
Q  9 atgagaaggagcaggggatggtgagtgatgttggtggtggtgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaacatgagaaggt 108  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3175972 atgagaaggagcaagggatggtgagtgatgttggtggcggtgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaacatgagaaggt 3176071  T
Q  109 gcatgtgatggtgagtggttgtggtgaggtgggctagctaatggtttatgaatcggtgacttagttgggggatgaagtggacttgatggtttgtgatgaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3176072 gcatgtgatggtgagtggttgtggtgaggtgggctagctaatggtttatgaatcggtgacttagttgggggatgaagtggacttgatggtttgtgatgaa 3176171  T
Q  209 aagtttctagctcttcagctaaagctatgaaagaggttatttcgagaaagagaaaaactaatactaaagttttggccattttttggtttaagagaaggta 308  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  3176172 aagtttctagctcttcagctaaagctatgaaagaggttatttggagaaagagaaaaaccaatactaaagttttggccattttttggtttaagagaatgta 3176271  T
Q  309 accttgagagagagggagatgagtgatgttggtgtgttgagagagtgtgatagttgatctatttataagagctgatgtcca 389  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  3176272 accttgaaagagagggagttgagtgatgttggtgtgttgagagagtgtgagagttgatctatttataagagctaatgtcca 3176352  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 3175790 - 3175875
Alignment:
Q  13 gaaggagcaggggatggtgagtgatgttggtggtggtgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaac 98  Q
    ||||| || |||||||||||||||||||||||||||||||| || || ||||| |||||||| |||||||||||||||||||||||    
T  3175790 gaaggggcgggggatggtgagtgatgttggtggtggtgatgagttggaggtttggcagggtgaggaggatgtaaaggagtgtgaac 3175875  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 3175607 - 3175691
Alignment:
Q  13 gaaggagcaggggatggtgagtgatgttggtggtggtgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaa 97  Q
    ||||| |||||||| |||||||||||||||||||||||||| || || ||||| |||||||| ||||||||||||||||||||||    
T  3175607 gaaggggcaggggaaggtgagtgatgttggtggtggtgatgtgttggaggtttggcagggtgaggaggatgtaaaggagtgtgaa 3175691  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 125
Target Start/End: Original strand, 3175904 - 3175998
Alignment:
Q  31 gagtgatgttggtggtggtgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaacatgagaaggtgcatgtgatggtgagtg 125  Q
    |||||||| || || || |||||||| || ||||| ||||| ||  ||||||||||||||||||||||||||||||| ||| | |||||||||||    
T  3175904 gagtgatgatgatgatgatgatgggttggaggttttgcaggatgacgaggatgtaaaggagtgtgaacatgagaaggagcaagggatggtgagtg 3175998  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 49 - 125
Target Start/End: Original strand, 3175736 - 3175812
Alignment:
Q  49 tgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaacatgagaaggtgcatgtgatggtgagtg 125  Q
    |||||||| |||||||| ||||||||  || |||||||||||||||||||||| ||||| ||  | |||||||||||    
T  3175736 tgatgggttgggggttttgcagggtgacgatgatgtaaaggagtgtgaacatgggaaggggcgggggatggtgagtg 3175812  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 3175581 - 3175629
Alignment:
Q  77 gaggatgtaaaggagtgtgaacatgagaaggtgcatgtgatggtgagtg 125  Q
    ||||||||||||||||||||||||| ||||| ||| | || ||||||||    
T  3175581 gaggatgtaaaggagtgtgaacatgggaaggggcaggggaaggtgagtg 3175629  T

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Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 34 - 375
Target Start/End: Original strand, 24541195 - 24541537
Alignment:
Q  34 tgatgttggtggtggtgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaacatgagaaggtgcatgtgatggtgagtggttgtggt 133  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  24541195 tgatgttggtggtggtgatgggtcgggggtttagcagggtgaggaggatgtaaaggagtgtgaacatgagaaggtgcatgggatggtgagtggttgtggt 24541294  T
Q  134 gaggtgggctagctaatggtttatgaatcggtgacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttctagctcttcagctaaagc 233  Q
    |||||||||||||||||||||||||||  |||||||||||||||| |||| ||||| ||| |||||||||||||| ||||||||||| |||||| || ||    
T  24541295 gaggtgggctagctaatggtttatgaacaggtgacttagttggggaatgatgtggagttgctggtttgtgatgaagagtttctagcttttcagcaaatgc 24541394  T
Q  234 tatgaaagaggttatttcgagaaagagaaaaactaatactaaagttttggccattttttggt-ttaagagaaggtaaccttgagagagagggagatgagt 332  Q
    ||||||||||||||||| ||||||||||||||  ||||  | |||||| |||||||||| || |||||||||||||||||||| ||||||||||||||||    
T  24541395 tatgaaagaggttatttggagaaagagaaaaaacaataagagagttttcgccatttttttgtgttaagagaaggtaaccttgaaagagagggagatgagt 24541494  T
Q  333 gatgttggtgtgttgagagagtgtgatagttgatctatttata 375  Q
    ||||||| |||||||||||||||||| ||||||||||||||||    
T  24541495 gatgttgatgtgttgagagagtgtgagagttgatctatttata 24541537  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 24540985 - 24541070
Alignment:
Q  13 gaaggagcaggggatggtgagtgatgttggtggtggtgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaac 98  Q
    ||||| ||||||||||||||||||||||||||| |||||||||| || ||||| |||||||| |||||||||||||||||||||||    
T  24540985 gaaggggcaggggatggtgagtgatgttggtggcggtgatgggttggaggtttggcagggtgaggaggatgtaaaggagtgtgaac 24541070  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 125
Target Start/End: Original strand, 24540933 - 24541007
Alignment:
Q  51 atgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaacatgagaaggtgcatgtgatggtgagtg 125  Q
    |||||| |||||||| ||||||||  ||||||||||||||||||||||||| ||||| ||| | |||||||||||    
T  24540933 atgggtggggggttttgcagggtgacgaggatgtaaaggagtgtgaacatgggaaggggcaggggatggtgagtg 24541007  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 125
Target Start/End: Original strand, 24541114 - 24541190
Alignment:
Q  49 tgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaacatgagaaggtgcatgtgatggtgagtg 125  Q
    ||||| || |||||||| || |||||  ||||||||||||||| ||||||||| ||||| | | | |||||||||||    
T  24541114 tgatgagttgggggttttgctgggtgacgaggatgtaaaggagggtgaacatgggaaggcgtaggggatggtgagtg 24541190  T

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Target: chr5 (Bit Score: 177; Significance: 3e-95; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 34 - 365
Target Start/End: Complemental strand, 20964058 - 20963741
Alignment:
Q  34 tgatgttggtggtggtgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaacatgagaaggtgcatgtgatggtgagtggttgtggt 133  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  20964058 tgatgctggtggtggtgatgggtcgggggtttagcagggtgaggaggatgtaaaggagtgtgaacatgagaaggtgcatgggatggtgagtggttgtggt 20963959  T
Q  134 gaggtgggctagctaatggtttatgaatcggtgacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttctagctcttcagctaaagc 233  Q
    |               ||||||||||| |||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||  || ||    
T  20963958 g---------------tggtttatgaaccggtgacttagttgggggatgaagtggagttgctggtttgttatgaaaagtttctagctcttcagtaaatgc 20963874  T
Q  234 tatgaaagaggttatttcgagaaagagaaaaactaatactaaagttttggccatt--ttttggtttaagagaaggtaaccttgagagagagggagatgag 331  Q
    ||||||||||||||||| ||||||||||||||  ||||| | |||||||||||||  |||||  ||||||||| | |||||||| ||||||||||| ||     
T  20963873 tatgaaagaggttatttggagaaagagaaaaaacaataccagagttttggccattttttttgtgttaagagaaag-aaccttgaaagagagggagaggat 20963775  T
Q  332 tgatgttggtgtgttgagagagtgtgatagttga 365  Q
    ||||||||||||||||||||||||||| ||||||    
T  20963774 tgatgttggtgtgttgagagagtgtgagagttga 20963741  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 8 - 98
Target Start/End: Complemental strand, 20964276 - 20964186
Alignment:
Q  8 aatgagaaggagcaggggatggtgagtgatgttggtggtggtgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaac 98  Q
    |||| ||||| || ||||||||||||||||||||||||||||||||||| || ||||| ||||| || ||| |||||||||||||||||||    
T  20964276 aatgtgaaggggcgggggatggtgagtgatgttggtggtggtgatgggttggaggtttggcaggatgaggatgatgtaaaggagtgtgaac 20964186  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 20964157 - 20964081
Alignment:
Q  31 gagtgatgttggtggtggtgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaacatgagaagg 107  Q
    |||||||| || || || |||||||| |||||||| ||||||||  ||||||||| ||||||||||||||| |||||    
T  20964157 gagtgatgatgatgatgatgatgggttgggggttttgcagggtgacgaggatgtataggagtgtgaacatgggaagg 20964081  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 125
Target Start/End: Complemental strand, 20964323 - 20964249
Alignment:
Q  51 atgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaacatgagaaggtgcatgtgatggtgagtg 125  Q
    |||||| |||||||| ||||||||  ||||||||||||||||||||| ||| ||||| ||  | |||||||||||    
T  20964323 atgggtggggggttttgcagggtgacgaggatgtaaaggagtgtgaaaatgtgaaggggcgggggatggtgagtg 20964249  T

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Target: chr2 (Bit Score: 145; Significance: 3e-76; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 118 - 381
Target Start/End: Original strand, 41525197 - 41525460
Alignment:
Q  118 ggtgagtggttgtggtgaggtgggctagctaatggtttatgaatcggtgacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttcta 217  Q
    ||||||||| |||||||||||||| |||| ||||||||||||| ||||||||||||||||| |||||||||| ||| |||||||||||||| ||||||||    
T  41525197 ggtgagtggctgtggtgaggtgggttagccaatggtttatgaaccggtgacttagttgggg-atgaagtggagttgctggtttgtgatgaagagtttcta 41525295  T
Q  218 gctcttcagctaaagctatgaaagaggttatttcgagaaagagaaaaact-aatactaaagttttggccattttttggtttaagagaaggtaaccttgag 316  Q
    |||||||||| || |||||||| |||||||||| ||| ||||||||||   ||||||| |||||||||||||||||| |||||||||| | ||| ||||     
T  41525296 gctcttcagcaaatgctatgaaggaggttatttggagtaagagaaaaaaacaatactagagttttggccattttttgttttaagagaatgcaactttgaa 41525395  T
Q  317 agagagggagatgagtgatgttggtgtgttgagagagtgtgatagttgatctatttataagagct 381  Q
    |||||||||||  ||| ||||||||| ||||||||||||||| |||||||||||||||| |||||    
T  41525396 agagagggagagaagtaatgttggtgggttgagagagtgtgagagttgatctatttataggagct 41525460  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 41524573 - 41524658
Alignment:
Q  13 gaaggagcaggggatggtgagtgatgttggtggtggtgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaac 98  Q
    ||||||||||||||||||||||| |||||||||||||||||||| || ||||| | |||||  |||||||||||||||||||||||    
T  41524573 gaaggagcaggggatggtgagtggtgttggtggtggtgatgggttggaggtttggtagggtaaggaggatgtaaaggagtgtgaac 41524658  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 41524917 - 41525002
Alignment:
Q  13 gaaggagcaggggatggtgagtgatgttggtggtggtgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaac 98  Q
    ||||||||||||||||||||||| |||||||||||||||||||| || ||||| | | |||   ||||||||||||||||||||||    
T  41524917 gaaggagcaggggatggtgagtggtgttggtggtggtgatgggttggaggtttggtatggtaaagaggatgtaaaggagtgtgaac 41525002  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 41524743 - 41524822
Alignment:
Q  13 gaaggagcaggggatggtgagtgatgttggtggtggtgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaac 98  Q
    |||||||||||||||||||||||      ||||||||||||||| || ||||| | |||||  |||||||||||||||||||||||    
T  41524743 gaaggagcaggggatggtgagtg------gtggtggtgatgggttggaggtttggtagggtaaggaggatgtaaaggagtgtgaac 41524822  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 49 - 127
Target Start/End: Original strand, 41524863 - 41524941
Alignment:
Q  49 tgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaacatgagaaggtgcatgtgatggtgagtggt 127  Q
    |||||||| |||||||| ||||||||  |||||| ||||||||| |||||||| ||||| ||| | |||||||||||||    
T  41524863 tgatgggttgggggttttgcagggtgacgaggatataaaggagtatgaacatgggaaggagcaggggatggtgagtggt 41524941  T

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Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 151 - 265
Target Start/End: Original strand, 14675143 - 14675257
Alignment:
Q  151 ggtttatgaatcggtgacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttctagctcttcagctaaagctatgaaagaggttattt 250  Q
    |||||||| | ||||||||| |||||||||||||||||  ||| |||||||||||||| |||||| |||||||| || ||  | | ||||||||||||||    
T  14675143 ggtttatgcaccggtgactttgttgggggatgaagtggtgttgttggtttgtgatgaagagtttcaagctcttccgcaaacacaacgaaagaggttattt 14675242  T
Q  251 cgagaaagagaaaaa 265  Q
     ||| ||||||||||    
T  14675243 ggagtaagagaaaaa 14675257  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 89
Target Start/End: Original strand, 14675026 - 14675081
Alignment:
Q  34 tgatgttggtggtggtgatgggtcgggggtttagcagggtggggaggatgtaaagg 89  Q
    |||||||||||||||||||||||  |||||||||||||||| || ||| |||||||    
T  14675026 tgatgttggtggtggtgatgggttaggggtttagcagggtgaggtggaggtaaagg 14675081  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 96
Target Start/End: Complemental strand, 16591938 - 16591879
Alignment:
Q  37 tgttggtggtggtgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtga 96  Q
    ||||||||||||||| |||| || |||||||||||||| | ||| |||||||||||||||    
T  16591938 tgttggtggtggtgacgggttggaggtttagcagggtgagaagggtgtaaaggagtgtga 16591879  T

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