View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_244 (Length: 237)
Name: NF8905A_low_244
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_244 |
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Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 20 - 197
Target Start/End: Original strand, 41521711 - 41521884
Alignment:
| Q |
20 |
atcatgtacatgtatattacacacaatatgttctatccttccttaataagatgcttctctagggtttttgctatttttaaaatagtgttattggaaatca |
119 |
Q |
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| T |
41521711 |
atcatgtacatgtatattacacacaatatgttatatcct----taataagatgcttctctagggtttttgctatttttaaaatagtgttaatggaaatct |
41521806 |
T |
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| Q |
120 |
cataaaactaaatttagaaaccgagcatgaaatgcgcatctttctatccttcgcaaaatgcttggctcctcatgaaat |
197 |
Q |
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| T |
41521807 |
cataaaactaaatttagaaaccgagcatgaaatgcacatctttctatccttcgcaaaatgcttggctcctcatgaaat |
41521884 |
T |
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Target: chr5 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 15 - 213
Target Start/End: Complemental strand, 1242352 - 1242147
Alignment:
| Q |
15 |
tggacatcatgtacatgtatattacacacaatatgttctatccttccttaataagatgcttctctagggtttttgctatttttaaaatagtgttattgga |
114 |
Q |
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| T |
1242352 |
tggatatcatgtacatgtatattacacacaatttgttctatcctt----aataagatgcttctctagggtttttgctatttttaaaatagtgttattgga |
1242257 |
T |
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| Q |
115 |
aatcacataaaactaaatttagaaaccgagcatgaa-----------atgcgcatctttctatccttcgcaaaatgcttggctcctcatgaaatatctgg |
203 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||| | |||||||||| | ||| |
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| T |
1242256 |
aatctcataaaactaaatttagaaaccgagcatgaaatacacaaaagatgcacatctttctatcctttgcaaaatgcttgggttctcatgaaatttatgg |
1242157 |
T |
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| Q |
204 |
catgctttct |
213 |
Q |
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| T |
1242156 |
catgctttct |
1242147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 15 - 197
Target Start/End: Complemental strand, 472907 - 472716
Alignment:
| Q |
15 |
tggacatcatgtacatgtatattacacacaatatgttctatccttccttaataagatg--cttctctagggtttttgctatttttaaaatagtgttattg |
112 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
472907 |
tggatatcgtgtacatgtatattacacacaatatgttctatcctt----aataagatgtacttctcttgggtttttgctatttttaaaatagtgttattg |
472812 |
T |
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| Q |
113 |
gaaatcacataaaactaaatttagaaaccgagcatgaa-----------atgcgcatctttctatccttcgcaaaatgcttggctcctcatgaaat |
197 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
472811 |
gaaatctcataaaactaaatttagaaaccgagcatgaaatgcacaaaagatgcacatctttctattattcgcaaaatgcttggctcctcatgaaat |
472716 |
T |
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