View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8905A_low_25 (Length: 403)

Name: NF8905A_low_25
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8905A_low_25
NF8905A_low_25
[»] chr8 (1 HSPs)
chr8 (16-403)||(20701211-20701599)
[»] chr5 (3 HSPs)
chr5 (275-310)||(20721051-20721086)
chr5 (277-309)||(21212080-21212112)
chr5 (277-313)||(31561366-31561402)
[»] chr4 (3 HSPs)
chr4 (279-313)||(46853867-46853901)
chr4 (277-310)||(11269697-11269730)
chr4 (277-309)||(36490571-36490603)
[»] chr3 (2 HSPs)
chr3 (279-313)||(27532839-27532873)
chr3 (277-313)||(25874133-25874169)
[»] chr2 (2 HSPs)
chr2 (277-310)||(8761589-8761622)
chr2 (277-313)||(14414917-14414953)
[»] chr1 (2 HSPs)
chr1 (277-310)||(29506830-29506863)
chr1 (277-313)||(29451004-29451040)
[»] chr7 (1 HSPs)
chr7 (277-309)||(21928144-21928176)


Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 16 - 403
Target Start/End: Original strand, 20701211 - 20701599
Alignment:
Q  16 ggacatcatttttctttgccaattattgctgaaattgatttgtataaatttgatccttgggttcttccaggtaattatctatcaccaatgtttatttcaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20701211 ggacatcatttttctttgccaattattgctgaaattgatttgtataaatttgatccttgggttcttccaggtaattatctatcaccaatgtttatttcaa 20701310  T
Q  116 gttttaggttgcaattgtagaatttttcatgtctttcaattttaaatatatgtcagaatcacagtgaaccagaatgattttgcaatagtcacactttcta 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||| ||||||||||    
T  20701311 gttttaggttgcaattgtagaatttttcatgtctttcaattttaaatatatgttagaatcacggtgaaccagtatgattttgcaatagttacactttcta 20701410  T
Q  216 gctcgtaacttctgcaagatcgcaccgtattcgaacacttttgcaatatttaaggatcataagcttaacttagttggtatggacaatac---ataataat 312  Q
    ||| ||||||| |||||||||||||| ||||| ||||||||||||||| ||||| |||||| |||||||| ||||||||||||||||||   ||||||||    
T  20701411 gctagtaacttttgcaagatcgcaccctattctaacacttttgcaatagttaagaatcatatgcttaactcagttggtatggacaatacataataataat 20701510  T
Q  313 aataataatatgcaaggtccaccgcnnnnnnnnnnnnncactaaaatcacaaacaactatgttaatcctgctgctaaatattgtgtttata 403  Q
    ||||||||||||||||||||||| |             |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20701511 aataataatatgcaaggtccaccac--aaaaaaaaaaacactaaaatcacaaacaactatgttaatcctgctgctaaatattgtgtttata 20701599  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 275 - 310
Target Start/End: Original strand, 20721051 - 20721086
Alignment:
Q  275 taagcttaacttagttggtatggacaatacataata 310  Q
    ||||||||||| ||||||||||||||||||||||||    
T  20721051 taagcttaactcagttggtatggacaatacataata 20721086  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 309
Target Start/End: Complemental strand, 21212112 - 21212080
Alignment:
Q  277 agcttaacttagttggtatggacaatacataat 309  Q
    ||||||||||||||| |||||||||||||||||    
T  21212112 agcttaacttagttgatatggacaatacataat 21212080  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 313
Target Start/End: Complemental strand, 31561402 - 31561366
Alignment:
Q  277 agcttaacttagttggtatggacaatacataataata 313  Q
    ||||||||| |||||||||||||||| ||||||||||    
T  31561402 agcttaactcagttggtatggacaatgcataataata 31561366  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 46853867 - 46853901
Alignment:
Q  279 cttaacttagttggtatggacaatacataataata 313  Q
    ||||||| |||||||||||||||||||||||||||    
T  46853867 cttaactcagttggtatggacaatacataataata 46853901  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 310
Target Start/End: Original strand, 11269697 - 11269730
Alignment:
Q  277 agcttaacttagttggtatggacaatacataata 310  Q
    |||||||||||||||||| |||||||||||||||    
T  11269697 agcttaacttagttggtaaggacaatacataata 11269730  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 309
Target Start/End: Original strand, 36490571 - 36490603
Alignment:
Q  277 agcttaacttagttggtatggacaatacataat 309  Q
    |||||||||||||||||||||||||| ||||||    
T  36490571 agcttaacttagttggtatggacaatgcataat 36490603  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 27532839 - 27532873
Alignment:
Q  279 cttaacttagttggtatggacaatacataataata 313  Q
    ||||||| |||||||||||||||||||||||||||    
T  27532839 cttaactcagttggtatggacaatacataataata 27532873  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 313
Target Start/End: Original strand, 25874133 - 25874169
Alignment:
Q  277 agcttaacttagttggtatggacaatacataataata 313  Q
    ||||||||| |||||||||||||||| ||||||||||    
T  25874133 agcttaactcagttggtatggacaatgcataataata 25874169  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 310
Target Start/End: Complemental strand, 8761622 - 8761589
Alignment:
Q  277 agcttaacttagttggtatggacaatacataata 310  Q
    ||||||||| ||||||||||||||||||||||||    
T  8761622 agcttaactcagttggtatggacaatacataata 8761589  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 313
Target Start/End: Complemental strand, 14414953 - 14414917
Alignment:
Q  277 agcttaacttagttggtatggacaatacataataata 313  Q
    ||||||||| |||||||||||||||| ||||||||||    
T  14414953 agcttaactcagttggtatggacaatgcataataata 14414917  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 310
Target Start/End: Original strand, 29506830 - 29506863
Alignment:
Q  277 agcttaacttagttggtatggacaatacataata 310  Q
    ||||||||||||||||||| ||||||||||||||    
T  29506830 agcttaacttagttggtatagacaatacataata 29506863  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 313
Target Start/End: Complemental strand, 29451040 - 29451004
Alignment:
Q  277 agcttaacttagttggtatggacaatacataataata 313  Q
    ||||||||| |||||||||||||||| ||||||||||    
T  29451040 agcttaactcagttggtatggacaatgcataataata 29451004  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 309
Target Start/End: Complemental strand, 21928176 - 21928144
Alignment:
Q  277 agcttaacttagttggtatggacaatacataat 309  Q
    |||||||||||||||||||||||||| ||||||    
T  21928176 agcttaacttagttggtatggacaatgcataat 21928144  T

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