View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_256 (Length: 232)
Name: NF8905A_low_256
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_256 |
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Alignment Details
Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 12156105 - 12156298
Alignment:
| Q |
20 |
atcaaacccttatgaacacttcctgcattacaatcacatcctagcaaaatcatctgtaataaaaaatatcttaaaaatgcgttgtattttggttcaattt |
119 |
Q |
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| T |
12156105 |
atcaaacccttatgaagacttcttgcattacaatcacatcctagcaaaattatctataataaaaaagatcttaaaaatgtgttgaattttggttcaattt |
12156204 |
T |
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| Q |
120 |
ttacccaaaatcatccattcaaattatttttccttcgtttttagttaaataagtgacgtacacatattttcaacattctttcatttgttttgat |
213 |
Q |
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| T |
12156205 |
tgacccaaaatcatccattcaaattatttttccttcgtttttagttaaataagtgacgtacacatattttcaacattctttcatttcttttgat |
12156298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 1419143 - 1419094
Alignment:
| Q |
157 |
tttttagttaaataagtgacgtacacatattttcaacattctttcatttg |
206 |
Q |
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| T |
1419143 |
tttttagttaaataagtgattttcacatattttcaatattatttcatttg |
1419094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 192
Target Start/End: Original strand, 55125495 - 55125546
Alignment:
| Q |
141 |
aattatttttccttcgtttttagttaaataagtgacgtacacatattttcaa |
192 |
Q |
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| T |
55125495 |
aattatttttctttcttttttagttaaataaatgacttccacatattttcaa |
55125546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 53293114 - 53293186
Alignment:
| Q |
139 |
caaattatttttccttcgtttttagttaaataagtgacgtacacatattttcaacattctttcatttgttttg |
211 |
Q |
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| T |
53293114 |
caaattgtttttccttcttttttagttaagtaagtgattttcacgtatttttcatcttctttcatttgttttg |
53293186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 210
Target Start/End: Complemental strand, 24114779 - 24114708
Alignment:
| Q |
139 |
caaattatttttccttcgtttttagttaaataagtgacgtacacatattttcaacattctttcatttgtttt |
210 |
Q |
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| T |
24114779 |
caaattgtttttctttcttttttagttaaataagtgattttaacatattttcaatattattttatttgtttt |
24114708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 210
Target Start/End: Complemental strand, 12832442 - 12832370
Alignment:
| Q |
137 |
ttcaaattatttttccttcgtttttagttaaataagtgacgtacacatattttcaacattctttcatttgtttt |
210 |
Q |
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| T |
12832442 |
ttcaaattatttttctttc-tttttagttaaataattgatttccacatattttcaattatctttcgtttgtttt |
12832370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 977269 - 977305
Alignment:
| Q |
139 |
caaattatttttccttcgtttttagttaaataagtga |
175 |
Q |
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| T |
977269 |
caaattgtttttccttcttttttagttaaataagtga |
977305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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