View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8905A_low_259 (Length: 231)
Name: NF8905A_low_259
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_259 |
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| [»] scaffold0029 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0012 (1 HSPs) |
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| [»] scaffold0265 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0093 (1 HSPs) |
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Alignment Details
Target: scaffold0029 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 127321 - 127534
Alignment:
| Q |
18 |
catcatcctattttgctttctcttatttattccacggtgaagcatgcatctccatttaaatttttcaaagcatggatctctcatgacggttgtaggcaga |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
127321 |
catcatcctattttgctttctcttatttattccacggtgaagcatgcatctccatttaaatttttcaaagcatggatctctcatgacggttgtaggcagc |
127420 |
T |
|
| Q |
118 |
tggtgtcggaaacttggtcgaagggtgttcgcggacaaggaatcgctcagttacagtctaaattaaataatgtaaaaaatgctttcaaactacggaatcg |
217 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||| ||||||||||||||| || ||||||| |
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| T |
127421 |
tggtgtctgacacttggtcgaagggtgttcgcggacaaggaatggcccggttacagtctaaattaaataatgtcaaaaatgctttcaaaatatggaatcg |
127520 |
T |
|
| Q |
218 |
tacaatttttggtg |
231 |
Q |
| |
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|||||||||||||| |
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|
| T |
127521 |
tacaatttttggtg |
127534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 305138 - 305351
Alignment:
| Q |
18 |
catcatcctattttgctttctcttatttattccacggtgaagcatgcatctccatttaaatttttcaaagcatggatctctcatgacggttgtaggcaga |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
305138 |
catcatcctattttgctttctcttatttattccacggtgaagcatgcatctccatttaaatttttcaaagcatggatctctcatgacggttgtaggcagc |
305237 |
T |
|
| Q |
118 |
tggtgtcggaaacttggtcgaagggtgttcgcggacaaggaatcgctcagttacagtctaaattaaataatgtaaaaaatgctttcaaactacggaatcg |
217 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||| ||||||||||||||| || ||||||| |
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| T |
305238 |
tggtgtctgacacttggtcgaagggtgttcgcggacaaggaatggcccggttacagtctaaattaaataatgtcaaaaatgctttcaaaatatggaatcg |
305337 |
T |
|
| Q |
218 |
tacaatttttggtg |
231 |
Q |
| |
|
|||||||||||||| |
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| T |
305338 |
tacaatttttggtg |
305351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 21809599 - 21809812
Alignment:
| Q |
18 |
catcatcctattttgctttctcttatttattccacggtgaagcatgcatctccatttaaatttttcaaagcatggatctctcatgacggttgtaggcaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21809599 |
catcatcctattttgctttctcttatttattcgacggtgaagcatgcatctccatttaaatttttcaaagcatggatctctcatgacggttgtaggcagc |
21809698 |
T |
|
| Q |
118 |
tggtgtcggaaacttggtcgaagggtgttcgcggacaaggaatcgctcagttacagtctaaattaaataatgtaaaaaatgctttcaaactacggaatcg |
217 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||| || ||||||| |
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| T |
21809699 |
tggtgtctgacacttggtcgaagggtgttcgcggacaaggaatagctcggttacagtctaaattaaataatgtcaaaaatgctttcaaaatatggaatcg |
21809798 |
T |
|
| Q |
218 |
tacaatttttggtg |
231 |
Q |
| |
|
|| ||||||||||| |
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| T |
21809799 |
tataatttttggtg |
21809812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 59344 - 59131
Alignment:
| Q |
18 |
catcatcctattttgctttctcttatttattccacggtgaagcatgcatctccatttaaatttttcaaagcatggatctctcatgacggttgtaggcaga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
59344 |
catcatcctattttgctttctcttatttattccactgtgaagcatgcatctccatttaaatttttcaaagcatggatctctcatgacggttgtaggcagt |
59245 |
T |
|
| Q |
118 |
tggtgtcggaaacttggtcgaagggtgttcgcggacaaggaatcgctcagttacagtctaaattaaataatgtaaaaaatgctttcaaactacggaatcg |
217 |
Q |
| |
|
||||||| || ||||||||||||||||||||||| || ||||| | || |||||| ||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
59244 |
tggtgtctgacacttggtcgaagggtgttcgcggtcagggaatggttcggttacaatctaaattaaataatgtaaaaaatgctttcaaaatatggaatcg |
59145 |
T |
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| Q |
218 |
tacaatttttggtg |
231 |
Q |
| |
|
|||||||||||||| |
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| T |
59144 |
tacaatttttggtg |
59131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0265 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: scaffold0265
Description:
Target: scaffold0265; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 23210 - 22997
Alignment:
| Q |
18 |
catcatcctattttgctttctcttatttattccacggtgaagcatgcatctccatttaaatttttcaaagcatggatctctcatgacggttgtaggcaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23210 |
catcatcctattttgctttctcttatttattcgacggtgaagcatgcatctccatttaaatttttcaaagcatggatctctcatgacggttgtaggcagc |
23111 |
T |
|
| Q |
118 |
tggtgtcggaaacttggtcgaagggtgttcgcggacaaggaatcgctcagttacagtctaaattaaataatgtaaaaaatgctttcaaactacggaatcg |
217 |
Q |
| |
|
||||||| || ||||||||||||||||||| ||| |||||||| |||| |||||||||||| ||||||||||| ||||||||||||||| || ||||||| |
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| T |
23110 |
tggtgtctgacacttggtcgaagggtgttctcggtcaaggaattgctcggttacagtctaatttaaataatgtcaaaaatgctttcaaaatatggaatcg |
23011 |
T |
|
| Q |
218 |
tacaatttttggtg |
231 |
Q |
| |
|
|| ||||||||||| |
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|
| T |
23010 |
tataatttttggtg |
22997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 32 - 231
Target Start/End: Complemental strand, 1928282 - 1928083
Alignment:
| Q |
32 |
gctttctcttatttattccacggtgaagcatgcatctccatttaaatttttcaaagcatggatctctcatgacggttgtaggcagatggtgtcggaaact |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||| || ||| |
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|
| T |
1928282 |
gctttctcttatttattccacggtgaagcatgcatctccttttaaatttttcaaagcatggatttctcatgacggttgtaggcagctggtgtctgacact |
1928183 |
T |
|
| Q |
132 |
tggtcgaagggtgttcgcggacaaggaatcgctcagttacagtctaaattaaataatgtaaaaaatgctttcaaactacggaatcgtacaatttttggtg |
231 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||| || ||||| |||||||||||||| |
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| T |
1928182 |
tggtcgaagggtgttcgcggacaaggaatggctcggttacagtctaaattaaataatgtcaaaaatgctttcaaaatatagaatcatacaatttttggtg |
1928083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 21897704 - 21897575
Alignment:
| Q |
18 |
catcatcctattttgctttctcttatttattccacggtgaagcatgcatctccatttaaatttttcaaagcatggatctctcatgacggttgtaggcaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21897704 |
catcatcctattttgctttctcttatttattccacggtgatgcatgcatctccatttaaatttttcaaagcatggatctctcatgacggttgtaggcagc |
21897605 |
T |
|
| Q |
118 |
tggtgtcggaaacttggtcgaagggtgttc |
147 |
Q |
| |
|
||||||| || ||||||||||||||||||| |
|
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| T |
21897604 |
tggtgtctgacacttggtcgaagggtgttc |
21897575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 21 - 231
Target Start/End: Original strand, 12466 - 12675
Alignment:
| Q |
21 |
catcctattttgctttctcttatttattccacggtgaagcatgcatctccatttaaatttttcaaagcatggatctctcatgacggttgtaggcagatgg |
120 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| |||||||||||||||| ||||||||||||| ||| ||||| |||||||| |||||||||||| ||| |
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|
| T |
12466 |
catcctattttcctttctcttatttactccactatgaagcatgcatctccctttaaatttttcagagcgtggatatctcatgaaggttgtaggcagttgg |
12565 |
T |
|
| Q |
121 |
tgtcggaaacttggtcgaagggtgttcgcggacaaggaatcgctcagttacagtctaaattaaataatgtaaaaaatgctttcaaactacggaatcgtac |
220 |
Q |
| |
|
|||| || |||||||||||| ||||||| || || || || | | |||||| ||||||||||||||||| |||||| ||||||| || |||| || || |
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|
| T |
12566 |
tgtctgatacttggtcgaagagtgttcgaggtcatggcatggttaggttacaatctaaattaaataatgtgaaaaat-ctttcaagatatggaaccgcac |
12664 |
T |
|
| Q |
221 |
aatttttggtg |
231 |
Q |
| |
|
||||||||||| |
|
|
| T |
12665 |
aatttttggtg |
12675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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