View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_262 (Length: 230)
Name: NF8905A_low_262
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_262 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 49437548 - 49437770
Alignment:
| Q |
1 |
gaaagttgtagacttaatttcggtaacaaacaagtttatnnnnnnntatgtctacaagtttacgggataatttttccttcacttgtgcaccaacacaaat |
100 |
Q |
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| T |
49437548 |
gaaagttgtagacttaatttcggtaacaaacaagtttataaaaaaa-atgtctacaagtttacgggataatttttccttcacttgtgcaccaacacaaat |
49437646 |
T |
|
| Q |
101 |
ttaatgacaatcaaggtttcacattacaaaccaacaaacctagcagctgcatcataaaagcaaattaaagtgaactgtctggggagaacctatatgcatt |
200 |
Q |
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| T |
49437647 |
ttcatgacaatcaaggtttcacattacaaaccaacaaacctagcagctgcatcataaaagcaaattaaagtgaactgtctggggagaacctatatgcatt |
49437746 |
T |
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| Q |
201 |
tagtataacttcacatataggaga |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
49437747 |
tagtataacttcacatataggaga |
49437770 |
T |
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