View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8905A_low_266 (Length: 230)

Name: NF8905A_low_266
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8905A_low_266
NF8905A_low_266
[»] chr4 (3 HSPs)
chr4 (1-230)||(43516792-43517022)
chr4 (1-230)||(20543933-20544163)
chr4 (154-228)||(27300015-27300090)
[»] chr7 (2 HSPs)
chr7 (1-230)||(35213481-35213711)
chr7 (1-66)||(26855726-26855791)
[»] chr1 (4 HSPs)
chr1 (1-230)||(13867877-13868107)
chr1 (1-227)||(26510419-26510646)
chr1 (137-230)||(33150843-33150937)
chr1 (1-77)||(5808724-5808800)
[»] chr3 (2 HSPs)
chr3 (1-230)||(40513768-40513998)
chr3 (102-230)||(34829267-34829396)
[»] chr2 (2 HSPs)
chr2 (1-230)||(11196199-11196429)
chr2 (1-207)||(32624226-32624432)
[»] chr5 (1 HSPs)
chr5 (1-230)||(21367980-21368210)
[»] chr6 (1 HSPs)
chr6 (1-66)||(14687070-14687135)
[»] chr8 (2 HSPs)
chr8 (8-198)||(6245008-6245198)
chr8 (143-228)||(9510646-9510732)


Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 43516792 - 43517022
Alignment:
Q  1 gccgcttaaggtttccattttttcttggagattgttacgggataggttgccgactaagaatcatctcctgaggcgcgacatcatcattggcgaggcagca 100  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||  |||| | ||||||| ||||||||| ||||    
T  43516792 gccgcttaaggtttccatttttgcttggagattgttatgggataggttgccgactaagaatcatctcctccggcgtggcatcatcgttggcgaggtagca 43516891  T
Q  101 ttgtgtgttactgggtgcagcatggcagagtttgcttctcatttatttatacattgcgctactttcggtacattgtggcactttatcaggtgttggattg 200  Q
    |||||||||||||||||| ||||| || ||| || ||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||    
T  43516892 ttgtgtgttactgggtgcggcatgacatagtctgtttctcatttatttatacattgtgctactttcggtactttgtggcattttatcaggtgttggattg 43516991  T
Q  201 gaatgtc-ggtgttgatccccttaatattga 230  Q
    ||||||| |||| ||||||||||||||||||    
T  43516992 gaatgtcaggtgctgatccccttaatattga 43517022  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 20544163 - 20543933
Alignment:
Q  1 gccgcttaaggtttccattttttcttggagattgttacgggataggttgccgactaagaatcatctcctgaggcgcgacatcatcattggcgaggcagca 100  Q
    |||||| ||||||||||||||| ||||| |||| || || |||||||||||||||||||| ||||| || ||||| | ||| ||||  |||||| ||       
T  20544163 gccgctgaaggtttccatttttacttggcgattattgcgagataggttgccgactaagaaccatcttctaaggcgtggcataatcaacggcgagacaagt 20544064  T
Q  101 ttgtgtgttactgggtgcagcatggcagagtttgcttctcatttatttatacattgcgctactttcggtacattgtggcactttatcaggtgttggattg 200  Q
     ||||||| || |||||| | |||| ||||  | | |||||||||||||| || ||||| ||||| ||| ||||||||||  ||||||||| |||||| |    
T  20544063 atgtgtgtcacagggtgcggtatggaagagactacatctcatttatttattcactgcgccacttttggttcattgtggcatcttatcaggtcttggatcg 20543964  T
Q  201 gaatgtc-ggtgttgatccccttaatattga 230  Q
    ||||||| |||| ||| ||| ||||||||||    
T  20543963 gaatgtcaggtgctgacccctttaatattga 20543933  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 228
Target Start/End: Complemental strand, 27300090 - 27300015
Alignment:
Q  154 ttgcgctactttcggtacattgtggcactttatcaggtgttggattggaatgtc-ggtgttgatccccttaatatt 228  Q
    |||||| |||||||||||||||||||| | |||||| |||||||| |||||  | |||||||| |||| |||||||    
T  27300090 ttgcgccactttcggtacattgtggcattatatcagatgttggatcggaataccaggtgttgacccccctaatatt 27300015  T

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Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 35213711 - 35213481
Alignment:
Q  1 gccgcttaaggtttccattttttcttggagattgttacgggataggttgccgactaagaatcatctcctgaggcgcgacatcatcattggcgaggcagca 100  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| || ||  |||  | ||||||  ||||||||||||||    
T  35213711 gccgcttaaggtttccatttttgcttgaagattgttacgggataggttgccgactaagaatcaccttctccggcatggcatcattgttggcgaggcagca 35213612  T
Q  101 ttgtgtgttactgggtgcagcatggcagagtttgcttctcatttatttatacattgcgctactttcggtacattgtggcactttatcaggtgttggattg 200  Q
    |||||||||||||||||| |||||||||||| || ||| ||||||||||||||||| |||||||||| ||| |||||||| ||| |||||||||||||||    
T  35213611 ttgtgtgttactgggtgcggcatggcagagtctgtttcccatttatttatacattgtgctactttcgttactttgtggcattttgtcaggtgttggattg 35213512  T
Q  201 gaatgtc-ggtgttgatccccttaatattga 230  Q
    ||||||| |||||||||||||||||||||||    
T  35213511 gaatgtcaggtgttgatccccttaatattga 35213481  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 26855791 - 26855726
Alignment:
Q  1 gccgcttaaggtttccattttttcttggagattgttacgggataggttgccgactaagaatcatct 66  Q
    |||||| ||||||||||||||| ||||| |||| || || ||||||||||||||||||||||||||    
T  26855791 gccgctcaaggtttccatttttgcttggcgattattgcgtgataggttgccgactaagaatcatct 26855726  T

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Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 13867877 - 13868107
Alignment:
Q  1 gccgcttaaggtttccattttttcttggagattgttacgggataggttgccgactaagaatcatctcctgaggcgcgacatcatcattggcgaggcagca 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||  |||| |  |||||  ||||||||||||||    
T  13867877 gccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggtatcattgttggcgaggcagca 13867976  T
Q  101 ttgtgtgttactgggtgcagcatggcagagtttgcttctcatttatttatacattgcgctactttcggtacattgtggcactttatcaggtgttggattg 200  Q
    |||||||||||||||||  |||||||||||| || ||||||||||||| ||||||| |||||||| ||||| || ||||| ||| |||||||||||||||    
T  13867977 ttgtgtgttactgggtgtggcatggcagagtctgtttctcatttatttctacattgtgctacttttggtactttatggcattttgtcaggtgttggattg 13868076  T
Q  201 gaatgtc-ggtgttgatccccttaatattga 230  Q
    ||||||| |||| ||||||||||||||||||    
T  13868077 gaatgtcaggtgctgatccccttaatattga 13868107  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 26510419 - 26510646
Alignment:
Q  1 gccgcttaaggtttccattttttcttggagattgttacgggataggttgccgactaagaatcatctcctgaggcgcgacatcatcattggcgaggcagca 100  Q
    |||||| ||||| ||||| ||| ||||  | ||||| ||||| |||||||||||||||||| ||||  |||| || |   | |||| |  ||| ||||      
T  26510419 gccgctgaaggtctccatctttgcttgacggttgttgcgggacaggttgccgactaagaataatcttatgagacgtggagtaatcaataccgaagcagtt 26510518  T
Q  101 ttgtgtgttactgggtgcagcatggcagagtttgcttctcatttatttatacattgcgctactttcggtacattgtggcactttatcaggtgttggattg 200  Q
     |||||||||| || ||| ||| || ||||| |||  |||| || ||||| ||||| || | ||||||||||||||||||   |||||||| |||||| |    
T  26510519 atgtgtgttacaggatgcggcaaggaagagtctgcgcctcacttgtttattcattgtgccattttcggtacattgtggcatcatatcaggtcttggatcg 26510618  T
Q  201 gaatgtc-ggtgttgatccccttaatat 227  Q
    ||||||| |||||||| ||| |||||||    
T  26510619 gaatgtcaggtgttgacccctttaatat 26510646  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 230
Target Start/End: Complemental strand, 33150937 - 33150843
Alignment:
Q  137 tctcatttatttatacattgcgctactttcggtacattgtggcactttatcaggtgttggattggaatgtc-ggtgttgatccccttaatattga 230  Q
    |||||||||||||| || ||||| ||||| ||  ||||||||||  ||||||||| |||||| |||||||| ||||  || ||||||||||||||    
T  33150937 tctcatttatttattcactgcgccacttttggctcattgtggcatcttatcaggtcttggatcggaatgtcaggtgccgacccccttaatattga 33150843  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 5808800 - 5808724
Alignment:
Q  1 gccgcttaaggtttccattttttcttggagattgttacgggataggttgccgactaagaatcatctcctgaggcgcg 77  Q
    |||||| |||||||| || ||| ||||| | ||||| || || |||||||||||||||||| |||| ||||||||||    
T  5808800 gccgctaaaggtttctatctttgcttggcggttgttgcgagacaggttgccgactaagaataatcttctgaggcgcg 5808724  T

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Target: chr3 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 40513768 - 40513998
Alignment:
Q  1 gccgcttaaggtttccattttttcttggagattgttacgggataggttgccgactaagaatcatctcctgaggcgcgacatcatcattggcgaggcagca 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||  |||| |  |||||| | || |||||||||    
T  40513768 gccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttcttcggcgtggtatcatcgtcggtgaggcagca 40513867  T
Q  101 ttgtgtgttactgggtgcagcatggcagagtttgcttctcatttatttatacattgcgctactttcggtacattgtggcactttatcaggtgttggattg 200  Q
    ||||||||| | |||||  |||||||||||| ||  |||||||||||| |||||||  ||||||| ||||| || ||||| ||| |||||||||||||||    
T  40513868 ttgtgtgtttccgggtgtggcatggcagagtctgtctctcatttatttctacattgtcctacttttggtactttatggcattttgtcaggtgttggattg 40513967  T
Q  201 gaatgtc-ggtgttgatccccttaatattga 230  Q
    |||||||  ||| ||||||||||||||||||    
T  40513968 gaatgtcatgtgctgatccccttaatattga 40513998  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 230
Target Start/End: Complemental strand, 34829396 - 34829267
Alignment:
Q  102 tgtgtgttactgggtgcagcatggcagagtttgcttctcatttatttatacattgcgctactttcggtacattgtggcactttatcaggtgttggattgg 201  Q
    |||||||||| |||||| ||| || ||||| |||  |||| || ||||| ||||| || |||||| |||||||||||||   |||||||| |||||| ||    
T  34829396 tgtgtgttacagggtgcggcaaggaagagtctgcgcctcacttgtttattcattgtgccactttcagtacattgtggcatcatatcaggtcttggatcgg 34829297  T
Q  202 aatgtc-ggtgttgatccccttaatattga 230  Q
    |||||| |||||| | ||| ||||||||||    
T  34829296 aatgtcaggtgttaacccctttaatattga 34829267  T

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Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 11196429 - 11196199
Alignment:
Q  1 gccgcttaaggtttccattttttcttggagattgttacgggataggttgccgactaagaatcatctcctgaggcgcgacatcatcattggcgaggcagca 100  Q
    |||||| ||||||||||||||| ||||| ||||||| || |||||||||||||||||||| ||||| || ||||| | ||| |||| |||||||||||      
T  11196429 gccgctgaaggtttccatttttacttggcgattgttgcgagataggttgccgactaagaaccatcttctaaggcgtggcataatcaatggcgaggcagtt 11196330  T
Q  101 ttgtgtgttactgggtgcagcatggcagagtttgcttctcatttatttatacattgcgctactttcggtacattgtggcactttatcaggtgttggattg 200  Q
     |||||||||| |||||| | ||||||||| |||| |||||||||||||| || ||||| ||||| ||| ||||||||||  ||||||||| ||||||      
T  11196329 atgtgtgttacagggtgcggtatggcagagattgcgtctcatttatttattcactgcgccacttttggttcattgtggcatcttatcaggtcttggatca 11196230  T
Q  201 gaatgtc-ggtgttgatccccttaatattga 230  Q
    ||||||| ||||| || | ||||||||||||    
T  11196229 gaatgtcaggtgtcgacctccttaatattga 11196199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 32624432 - 32624226
Alignment:
Q  1 gccgcttaaggtttccattttttcttggagattgttacgggataggttgccgactaagaatcatctcctgaggcgcgacatcatcattggcgaggcagca 100  Q
    |||||| |||||||||||||||  |||| |||| ||  | |||||||||||||||||||| ||||| || ||||| | ||| ||||  |||||||||       
T  32624432 gccgctgaaggtttccatttttgtttggcgattattgagagataggttgccgactaagaaccatcttctaaggcgtggcataatcaacggcgaggcatgt 32624333  T
Q  101 ttgtgtgttactgggtgcagcatggcagagtttgcttctcatttatttatacattgcgctactttcggtacattgtggcactttatcaggtgttggattg 200  Q
     ||||||| || || ||| | |||| ||||  | | |||||||||||||| |||||||| ||||| ||| ||||||||||  ||||||||| ||||||||    
T  32624332 atgtgtgtcacaggatgcggtatggaagagactacatctcatttatttattcattgcgccacttttggttcattgtggcatcttatcaggtcttggattg 32624233  T
Q  201 gaatgtc 207  Q
    |||||||    
T  32624232 gaatgtc 32624226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 21367980 - 21368210
Alignment:
Q  1 gccgcttaaggtttccattttttcttggagattgttacgggataggttgccgactaagaatcatctcctgaggcgcgacatcatcattggcgaggca-gc 99  Q
    |||||| ||||||||||||||||||||| |||| ||  | |||||||||||||||||||| |||||||| ||||| | ||| ||||  ||||||||| |     
T  21367980 gccgctgaaggtttccattttttcttggcgattattgagagataggttgccgactaagaaccatctcctaaggcgtggcataatcaacggcgaggcatgt 21368079  T
Q  100 attgtgtgttactgggtgcagcatggcagagtttgcttctcatttatttatacattgcgctactttcggtacattgtggcactttatcaggtgttggatt 199  Q
    | | ||||| || |||||| | |||| ||||  | | ||| || | ||||| |||||||| ||||| ||| ||||||||||  ||||||||| ||||||     
T  21368080 aat-tgtgtcacagggtgcggtatggaagagactacatcttatctttttattcattgcgccacttttggttcattgtggcatcttatcaggtcttggatc 21368178  T
Q  200 ggaatgtc-ggtgttgatccccttaatattga 230  Q
    |||||||| |||| ||| || |||||||||||    
T  21368179 ggaatgtcaggtgctgaccctcttaatattga 21368210  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 14687070 - 14687135
Alignment:
Q  1 gccgcttaaggtttccattttttcttggagattgttacgggataggttgccgactaagaatcatct 66  Q
    |||||||||||||||||||||| ||||| |||| || || ||||||||||||||||||||||||||    
T  14687070 gccgcttaaggtttccatttttgcttggcgattattgcgtgataggttgccgactaagaatcatct 14687135  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 198
Target Start/End: Complemental strand, 6245198 - 6245008
Alignment:
Q  8 aaggtttccattttttcttggagattgttacgggataggttgccgactaagaatcatctcctgaggcgcgacatcatcattggcgaggcagcattgtgtg 107  Q
    |||||||| || ||| ||||| ||||| | || |||||||||| |||||||||| |||| |||||||||| | | |||  ||  || ||||| || ||||    
T  6245198 aaggtttctatctttgcttggcgattgatgcgagataggttgctgactaagaataatcttctgaggcgcggcgtgatcgatgctgaagcagcgttatgtg 6245099  T
Q  108 ttactgggtgcagcatggcagagtttgcttctcatttatttatacattgcgctactttcggtacattgtggcactttatcaggtgttggat 198  Q
    || | || ||| |||||| |||||   |  | || |||||| | |||||||| ||||||||||||||||||||   |||||||||||||||    
T  6245098 ttgcaggttgcggcatggaagagtccacgacacacttatttcttcattgcgccactttcggtacattgtggcatcatatcaggtgttggat 6245008  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 228
Target Start/End: Complemental strand, 9510732 - 9510646
Alignment:
Q  143 ttatttatacattgcgctactttcggtacattgtggcactttatcaggtgttggattggaatgtc-ggtgttgatccccttaatatt 228  Q
    |||||| | |||||||| |||||| |||||||||||||   ||||||||||||||| |||||  | |||||||| |||| |||||||    
T  9510732 ttatttcttcattgcgccactttcagtacattgtggcatcatatcaggtgttggatcggaataccaggtgttgacccccctaatatt 9510646  T

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