View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8905A_low_267 (Length: 230)

Name: NF8905A_low_267
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8905A_low_267
NF8905A_low_267
[»] chr4 (1 HSPs)
chr4 (1-229)||(1927694-1927922)
[»] scaffold0265 (1 HSPs)
scaffold0265 (5-229)||(22608-22832)
[»] scaffold0012 (1 HSPs)
scaffold0012 (5-225)||(58746-58966)
[»] chr1 (2 HSPs)
chr1 (5-229)||(21809977-21810201)
chr1 (80-223)||(41346876-41347019)
[»] scaffold0029 (1 HSPs)
scaffold0029 (6-229)||(127699-127922)
[»] scaffold0002 (1 HSPs)
scaffold0002 (6-229)||(305516-305739)
[»] chr5 (1 HSPs)
chr5 (5-225)||(21880889-21881109)
[»] scaffold0093 (1 HSPs)
scaffold0093 (16-229)||(12851-13064)
[»] chr2 (4 HSPs)
chr2 (25-199)||(20383487-20383661)
chr2 (53-226)||(33237090-33237263)
chr2 (21-228)||(32297351-32297558)
chr2 (23-213)||(25974055-25974245)
[»] chr7 (1 HSPs)
chr7 (35-213)||(20939856-20940034)
[»] scaffold0125 (2 HSPs)
scaffold0125 (133-222)||(38098-38187)
scaffold0125 (141-222)||(26563-26644)
[»] chr3 (1 HSPs)
chr3 (133-222)||(14677239-14677328)


Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 1927922 - 1927694
Alignment:
1 agcaagacaccatctgtttctcagtggtgaccgcaacactgcctatttccatagggtctccaaaattcgagcagcgacaaaatctatttctcttttacag 100  Q
    |||||||||||||| |||||| |||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
1927922 agcaagacaccatcagtttcttagtggtgatcgcaacactgcctatttccataaggtctccaaaatccgagcagcgacaaaatctatttctcttttacag 1927823  T
101 gatggtgacaatgtcataactgatcccactgctatagagttgcatattctttcttattttcaggaaatttttagcatggataacaattgtgctcagaata 200  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
1927822 gatggtgataatgtcataactgatcccactgctatagagttgcatattctttcttattttcaggaaatctttagcatggataacaattgtgctcagaata 1927723  T
201 ctttggtggatgaaaccattccttctctg 229  Q
    |||||||||||||||||||||||||||||    
1927722 ctttggtggatgaaaccattccttctctg 1927694  T

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Target: scaffold0265 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 5 - 229
Target Start/End: Complemental strand, 22832 - 22608
Alignment:
5 agacaccatctgtttctcagtggtgaccgcaacactgcctatttccatagggtctccaaaattcgagcagcgacaaaatctatttctcttttacaggatg 104  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||    
22832 agacaccatcagtttcttagtggtgaccgcaacactgcctatttccataaggtctccaaaatccgagcatcgacaaaatctatttctcttttacaggatg 22733  T
105 gtgacaatgtcataactgatcccactgctatagagttgcatattctttcttattttcaggaaatttttagcatggataacaattgtgctcagaatacttt 204  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
22732 gtgataatgtcataactgatcccactgctatagagttgcatattctttcttattttcaggaaatctttagcatggataacaattgtgctcagaatacttt 22633  T
205 ggtggatgaaaccattccttctctg 229  Q
    |||||||||||||||||||||||||    
22632 ggtggatgaaaccattccttctctg 22608  T

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Target: scaffold0012 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 5 - 225
Target Start/End: Complemental strand, 58966 - 58746
Alignment:
5 agacaccatctgtttctcagtggtgaccgcaacactgcctatttccatagggtctccaaaattcgagcagcgacaaaatctatttctcttttacaggatg 104  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
58966 agacaccatcagtttcttagtggtgaccgcaacactgcctatttccataaggtctccaaaatccgagcagcgacaaaatctatttctcttttacaggatg 58867  T
105 gtgacaatgtcataactgatcccactgctatagagttgcatattctttcttattttcaggaaatttttagcatggataacaattgtgctcagaatacttt 204  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |    
58866 gtgataatgtcataactgatcccactgctatagagttgcatattctttcttattttcaggaaatctttagcatggataacaattgtgctcagaatactat 58767  T
205 ggtggatgaaaccattccttc 225  Q
    |||||||||||||||||||||    
58766 ggtggatgaaaccattccttc 58746  T

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Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 5 - 229
Target Start/End: Original strand, 21809977 - 21810201
Alignment:
5 agacaccatctgtttctcagtggtgaccgcaacactgcctatttccatagggtctccaaaattcgagcagcgacaaaatctatttctcttttacaggatg 104  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||| ||||||||||||||||    
21809977 agacaccatcagtttcttagtggtgaccgcaacactgcctatttccataaggtctccaaaatccgagcaacgacaaaatctatctctcttttacaggatg 21810076  T
105 gtgacaatgtcataactgatcccactgctatagagttgcatattctttcttattttcaggaaatttttagcatggataacaattgtgctcagaatacttt 204  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
21810077 gtgataatgtcataactgatcccactgctatagagttgcatattctttcttattttcaggaaatctttagcatggataacaattgtgctcagaatacttt 21810176  T
205 ggtggatgaaaccattccttctctg 229  Q
    |||||||||||||||||||||||||    
21810177 ggtggatgaaaccattccttctctg 21810201  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 80 - 223
Target Start/End: Complemental strand, 41347019 - 41346876
Alignment:
80 aaatctatttctcttttacaggatggtgacaatgtcataactgatcccactgctatagagttgcatattctttcttattttcaggaaatttttagcatgg 179  Q
    ||||| |||||| | || ||||||||||| ||||| || |||||| |||  |  |||||| |||||||||||||||||||||| |  ||||||||| |||    
41347019 aaatcaatttctttcttgcaggatggtgaaaatgttattactgattccatggtaatagagatgcatattctttcttattttcaagctatttttagcgtgg 41346920  T
180 ataacaattgtgctcagaatactttggtggatgaaaccattcct 223  Q
    |||| || |||||  ||||||  ||||| |||||||| ||||||    
41346919 ataataactgtgcatagaatatgttggttgatgaaacaattcct 41346876  T

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Target: scaffold0029 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 6 - 229
Target Start/End: Original strand, 127699 - 127922
Alignment:
6 gacaccatctgtttctcagtggtgaccgcaacactgcctatttccatagggtctccaaaattcgagcagcgacaaaatctatttctcttttacaggatgg 105  Q
    ||||||||| ||||||||   ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
127699 gacaccatcagtttctcaagtgtgaccgcaacactgcctatttccatagggtctccaaaattggagcatcgacaaaatctatttctcttttacaggatgg 127798  T
106 tgacaatgtcataactgatcccactgctatagagttgcatattctttcttattttcaggaaatttttagcatggataacaattgtgctcagaatactttg 205  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
127799 tgataatgtcataactgatcccactgctatagagttgcatattctttcttattttcaggaaatttttagcatggataacaattgtactcagaatactttg 127898  T
206 gtggatgaaaccattccttctctg 229  Q
    ||||||||||||||||||||||||    
127899 gtggatgaaaccattccttctctg 127922  T

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Target: scaffold0002 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 6 - 229
Target Start/End: Original strand, 305516 - 305739
Alignment:
6 gacaccatctgtttctcagtggtgaccgcaacactgcctatttccatagggtctccaaaattcgagcagcgacaaaatctatttctcttttacaggatgg 105  Q
    ||||||||| ||||||||   ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
305516 gacaccatcagtttctcaagtgtgaccgcaacactgcctatttccatagggtctccaaaattggagcatcgacaaaatctatttctcttttacaggatgg 305615  T
106 tgacaatgtcataactgatcccactgctatagagttgcatattctttcttattttcaggaaatttttagcatggataacaattgtgctcagaatactttg 205  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
305616 tgataatgtcataactgatcccactgctatagagttgcatattctttcttattttcaggaaatttttagcatggataacaattgtactcagaatactttg 305715  T
206 gtggatgaaaccattccttctctg 229  Q
    ||||||||||||||||||||||||    
305716 gtggatgaaaccattccttctctg 305739  T

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Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 5 - 225
Target Start/End: Complemental strand, 21881109 - 21880889
Alignment:
5 agacaccatctgtttctcagtggtgaccgcaacactgcctatttccatagggtctccaaaattcgagcagcgacaaaatctatttctcttttacaggatg 104  Q
    |||||||||| |||||| |||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
21881109 agacaccatcagtttcttagtggtgatctcaacactgcctatttccataaggtctccaaaattcgagcagcgacaaaatctatttctcttttacaggatg 21881010  T
105 gtgacaatgtcataactgatcccactgctatagagttgcatattctttcttattttcaggaaatttttagcatggataacaattgtgctcagaatacttt 204  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |    
21881009 gtgataatgtcataactgatcccactgctatagagttgcatattctttcttattttcaggaaatctttagcatggataacaattgtgctcataatactat 21880910  T
205 ggtggatgaaaccattccttc 225  Q
    |||||||||||||||||||||    
21880909 ggtggatgaaaccattccttc 21880889  T

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Target: scaffold0093 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 12851 - 13064
Alignment:
16 gtttctcagtggtgaccgcaacactgcctatttccatagggtctccaaaattcgagcagcgacaaaatctatttctcttttacaggatggtgacaatgtc 115  Q
    |||||| |||||||||||||||||||||||||| |||||||||||  |||| |||||||||||||| |||||||||||||||| ||||||||| |||||     
12851 gtttcttagtggtgaccgcaacactgcctattttcatagggtctctcaaatccgagcagcgacaaagtctatttctcttttactggatggtgataatgtt 12950  T
116 ataactgatcccactgctatagagttgcatattctttcttattttcaggaaatttttagcatggataacaattgtgctcagaatactttggtggatgaaa 215  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||| |||||| ||||||||||||    
12951 atcactgatcccactgctatagagttgcatattctttcttattttcaggaaatttttaacatggacaacaactgtgctcaaaatactatggtggatgaaa 13050  T
216 ccattccttctctg 229  Q
     |||||||||||||    
13051 acattccttctctg 13064  T

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Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 25 - 199
Target Start/End: Original strand, 20383487 - 20383661
Alignment:
25 tggtgaccgcaacactgcctatttccatagggtctccaaaattcgagcagcgacaaaatctatttctcttttacaggatggtgacaatgtcataactgat 124  Q
    |||||| || |||||| | ||||||||  | || || |||||||  |||| ||||||| |||||||| ||||||||||||| || ||||| || ||||||    
20383487 tggtgatcgtaacactacttatttccaccgagtatctaaaattcaggcagtgacaaaaactatttcttttttacaggatggggataatgttattactgat 20383586  T
125 cccactgctatagagttgcatattctttcttattttcaggaaatttttagcatggataacaattgtgctcagaat 199  Q
    |||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||    
20383587 cccactgcaatagaattgcatattctttcttattttcaggcaatttttagcatggacaacaactgtgctcagaat 20383661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 53 - 226
Target Start/End: Complemental strand, 33237263 - 33237090
Alignment:
53 agggtctccaaaattcgagcagcgacaaaatctatttctcttttacaggatggtgacaatgtcataactgatcccactgctatagagttgcatattcttt 152  Q
    ||||| || ||||| || ||||| || ||||| |||||| | || ||||||||||||||||| ||  |||||||||| | |||||||  | ||||||| |    
33237263 agggtatctaaaatccgggcagcaaccaaatcgatttctttcttgcaggatggtgacaatgttatctctgatcccacagatatagagacgaatattctct 33237164  T
153 cttattttcaggaaatttttagcatggataacaattgtgctcagaatactttggtggatgaaaccattccttct 226  Q
    |||||||||||| | | |||||||||||||||||||||| |||||||||| |||| |||||||| |||||||||    
33237163 cttattttcaggcactctttagcatggataacaattgtgttcagaatactctggtagatgaaacaattccttct 33237090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 228
Target Start/End: Original strand, 32297351 - 32297558
Alignment:
21 tcagtggtgaccgcaacactgcctatttccatagggtctccaaaattcgagcagcgacaaaatctatttctcttttacaggatggtgacaatgtcataac 120  Q
    ||||||| ||||| |||||||| ||||| |||||  | || ||||| || ||||| ||||||||||||||| ||| | ||||||| |||||| | || ||    
32297351 tcagtggagaccgtaacactgcttattttcatagaatttctaaaatccgggcagcaacaaaatctatttctttttaagaggatggagacaatattattac 32297450  T
121 tgatcccactgctatagagttgcatattctttcttattttcaggaaatttttagcatggataacaattgtgctcagaatactttggtggatgaaaccatt 220  Q
    | | | |||  ||||| | ||||||||||| ||||||||||||| ||| || |||||||| || |||||| | || ||||||||||| |||||||| |||    
32297451 taaacacacaactatataattgcatattctctcttattttcaggcaatattcagcatggaaaataattgtacacaaaatactttggttgatgaaacaatt 32297550  T
221 ccttctct 228  Q
    || |||||    
32297551 ccctctct 32297558  T

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Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 23 - 213
Target Start/End: Complemental strand, 25974245 - 25974055
Alignment:
23 agtggtgaccgcaacactgcctatttccatagggtctccaaaattcgagcagcgacaaaatctatttctcttttacaggatggtgacaatgtcataactg 122  Q
    ||||| ||||| |||||||| || || || ||||| || ||||| || ||||| || || ||||||||| |  | ||||||||||| |||||  | ||||    
25974245 agtggggaccgtaacactgcttactttcacagggtgtctaaaatccgggcagccaccaactctatttctttactgcaggatggtgaaaatgttcttactg 25974146  T
123 atcccactgctatagagttgcatattctttcttattttcaggaaatttttagcatggataacaattgtgctcagaatactttggtggatga 213  Q
    ||||||  | ||| ||| |||||||||||||||||||||| |  ||||||| ||||||||| || |||| ||| ||||| |||||||||||    
25974145 atcccatggatattgagatgcatattctttcttattttcaaggtatttttaccatggataataactgtgttcaaaatacgttggtggatga 25974055  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 35 - 213
Target Start/End: Complemental strand, 20940034 - 20939856
Alignment:
35 aacactgcctatttccatagggtctccaaaattcgagcagcgacaaaatctatttctcttttacaggatggtgacaatgtcataactgatcccactgcta 134  Q
    |||||||| || || || ||||| || ||||| || ||||| || || ||||||||| |  | |||||||||||||||||  | ||||||||||  | ||    
20940034 aacactgcttactttcacagggtgtctaaaatccgggcagccaccaactctatttctttactgcaggatggtgacaatgttcttactgatcccatggata 20939935  T
135 tagagttgcatattctttcttattttcaggaaatttttagcatggataacaattgtgctcagaatactttggtggatga 213  Q
    | ||| |||||||||||||||||||||| |  ||||||| ||||||||| || |||| ||| ||||| |||||||||||    
20939934 ttgagatgcatattctttcttattttcaaggtatttttaccatggataataactgtgttcaaaatacattggtggatga 20939856  T

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Target: scaffold0125 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 38187 - 38098
Alignment:
133 tatagagttgcatattctttcttattttcaggaaatttttagcatggataacaattgtgctcagaatactttggtggatgaaaccattcc 222  Q
    |||||||||||||||||| ||||| |||||||  ||||| ||||||||||| || |||| ||| |||||||| |||||||| ||||||||    
38187 tatagagttgcatattctatcttactttcagggtattttcagcatggataataactgtggtcaaaatactttagtggatgagaccattcc 38098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 141 - 222
Target Start/End: Complemental strand, 26644 - 26563
Alignment:
141 tgcatattctttcttattttcaggaaatttttagcatggataacaattgtgctcagaatactttggtggatgaaaccattcc 222  Q
    |||||||||| ||||| |||||||  ||||| ||||||||||| ||||||| ||||||||| || |||||||| ||||||||    
26644 tgcatattctatcttactttcagggtattttcagcatggataataattgtggtcagaatacattagtggatgagaccattcc 26563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 14677328 - 14677239
Alignment:
133 tatagagttgcatattctttcttattttcaggaaatttttagcatggataacaattgtgctcagaatactttggtggatgaaaccattcc 222  Q
    |||||||||||||||||| ||||| |||||||  ||||| ||||||||||| || |||| |||||||||||| |||||||| | ||||||    
14677328 tatagagttgcatattctatcttactttcagggtattttcagcatggataataactgtggtcagaatactttagtggatgagatcattcc 14677239  T

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