View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_268 (Length: 230)
Name: NF8905A_low_268
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_268 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 36984735 - 36984510
Alignment:
| Q |
1 |
aaaatgttcaaaaaatgtgtattcttccaattatatcggttttgctggcatgaagtatttagtctctatgctaatatttggaggtggcaggatatcctca |
100 |
Q |
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| T |
36984735 |
aaaatgttcaaaaaatgtgtattcttccaattatatcgggttggcttgcatgaagtatttagtctctatgctaatatttggaggtggcaggatatcctca |
36984636 |
T |
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| Q |
101 |
tgcctaaaatttggccaagtcaaatgcatcgtcagccacagtggaaaccaaaggaacagcagagtgacacagttagggtagaggttc--cagtgttctgc |
198 |
Q |
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| T |
36984635 |
tgcctaaaatttggccaagtcaaatgcatcgtcagccacagtggaaaccaatggaacagcagagtgacacagttggtgtagaggttccacagagttctac |
36984536 |
T |
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| Q |
199 |
tattgcgcaaaaggaagtgcagaaag |
224 |
Q |
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| T |
36984535 |
tattgcgcaaaaggaagtgcagaaag |
36984510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 10 - 164
Target Start/End: Complemental strand, 36985372 - 36985214
Alignment:
| Q |
10 |
aaaaaatgtgtattcttccaattatatcggttttgctggcatgaagtatttagtctctatgctaatatttggaggtggcaggatatcc---tcatgccta |
106 |
Q |
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| T |
36985372 |
aaaaaatgtgtattcttccaattataccgggtaggtttacatgaagtacttagtctctatgctattatttggatgttgcaggatattcctgtcataccta |
36985273 |
T |
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| Q |
107 |
aaatttggccaagtc-aaatgcatcgtcagccacagtggaaaccaaaggaacagcagag |
164 |
Q |
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| T |
36985272 |
aaattgggccaagtcaaaatgaatcatcagcctcagtggaaaccaaaggaacagtagag |
36985214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 164
Target Start/End: Complemental strand, 36980830 - 36980675
Alignment:
| Q |
12 |
aaaatgtgtattcttccaattatatcggttttgctggcatgaagtatttagtctctatgctaatatttggaggtggcaggatatcc---tcatgcctaaa |
108 |
Q |
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| T |
36980830 |
aaaatgtttattgttccaattatattgggtt-gcttgtatgaagtacttggtctctatgcttatatttggatgttgcaggatattcctgtcatgctaaaa |
36980732 |
T |
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| Q |
109 |
atttggccaagtcaaa-tgcatcgtcagccacagtggaaaccaaaggaacagcagag |
164 |
Q |
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| T |
36980731 |
attaggccaagtcaaaatgcatcatcagtcacagtggaaaccaaaggaacagcagag |
36980675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 163
Target Start/End: Complemental strand, 36986516 - 36986369
Alignment:
| Q |
19 |
gtattcttccaattatatcggttttgctggcatgaagtatttagtctctatgctaatatttggaggtggcaggatatcc---tcatgcctaaaatttggc |
115 |
Q |
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| T |
36986516 |
gtattcctccgattatattggttg-gcttgcaggaagtacttggtctctatgctaatacttggatgttgcaggatattcctgtcttgccgaaaattgggc |
36986418 |
T |
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| Q |
116 |
caagtcaaa-tgcatcgtcagccacagtggaaaccaaaggaacagcaga |
163 |
Q |
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| T |
36986417 |
caagtcaaaatgcatcattagccacagtggaaaccaatgtaacagcaga |
36986369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 36996724 - 36996550
Alignment:
| Q |
1 |
aaaatgttcaaaaaatgtgtattcttccaattatatcggtt----ttgc---tggcatgaagtatttagtctctatgctaatatttggaggtggcaggat |
93 |
Q |
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| T |
36996724 |
aaaatgtttaagaaatgtgtattcttccaattatatcgggtcggcttgcaagttgcatgaaatattcggccttgatgcaaatatttggatgtttcaggat |
36996625 |
T |
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| Q |
94 |
atcc---tcatgcctaaaatttggccaagtcaaa-tgcatcgtcagccacagtggaaaccaaaggaacagcagag |
164 |
Q |
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| T |
36996624 |
attcctgtcattcctgaaattgggccaagtcaaaatgcatcatcagtcacagtggaaactaaaggaacagcagag |
36996550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 36979152 - 36979088
Alignment:
| Q |
98 |
tcatgcctaaaatttggccaagtcaaa-tgcatcgtcagccacagtggaaaccaaaggaacagca |
161 |
Q |
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| T |
36979152 |
tcatgcctaaaattgcgtcaagtcaaaatgcatcatcagccacagtagaaactaaaggaacagca |
36979088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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