View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_27 (Length: 396)
Name: NF8905A_low_27
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 36603590 - 36603201
Alignment:
| Q |
1 |
tgcatcagttatttggggcttaattggtccaagaagaatcttcggaaacttaggaacctacgagaatatcaattggttcgtcctaggtggagccattgct |
100 |
Q |
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| T |
36603590 |
tgcatcagttatttggggcttaattggtccaagaagaatcttcggaaacttaggaacctacgagaatatcaattggttcttcctaggtggagccattgct |
36603491 |
T |
|
| Q |
101 |
cctttgttagtttggttagctacaagagcctttccacaacaagaatggattaaactcatcaacatgcctgtgttgataggtgctactggaatgatgccac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36603490 |
cctttgttagtttggttagctacaagagcctttccacaacaagaatggattaaactcatcaacatgcctgtgttgataggtgctactggaatgatgccac |
36603391 |
T |
|
| Q |
201 |
cagctacagcagtgaattacactagctggatcattgttggttttttgtctgggtttgttgtgtataggtataaaccagattggtggcagcgtcataatta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
36603390 |
cagctacagcagtgaattacactagctggatcattgttggttttttgtctggttttgttgtgtataggtataagccagaatggtggcagcgtcataatta |
36603291 |
T |
|
| Q |
301 |
tgtgttgtctggtgcattggatgctggtcttgctttcatgggtgtggttttgtacctttgtttaggattagaggaaataagtattgattg |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36603290 |
tgtgttgtctggtgcattggatgctggtcttgctttcatgggtgtggttttgtacctttgtttaggattagaggaaataagtattgattg |
36603201 |
T |
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