View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8905A_low_280 (Length: 228)

Name: NF8905A_low_280
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8905A_low_280
NF8905A_low_280
[»] chr5 (5 HSPs)
chr5 (1-167)||(32268817-32268983)
chr5 (33-191)||(41900158-41900316)
chr5 (135-207)||(32268755-32268825)
chr5 (41-116)||(41886271-41886346)
chr5 (134-183)||(12846943-12846992)
[»] chr7 (4 HSPs)
chr7 (123-190)||(15091347-15091414)
chr7 (125-187)||(10168806-10168868)
chr7 (125-187)||(10176331-10176393)
chr7 (62-103)||(10616209-10616250)
[»] chr4 (18 HSPs)
chr4 (129-190)||(2460597-2460658)
chr4 (111-184)||(2367656-2367729)
chr4 (129-178)||(2547544-2547593)
chr4 (132-184)||(2381378-2381430)
chr4 (130-190)||(6007665-6007725)
chr4 (126-184)||(566629-566687)
chr4 (131-184)||(2525763-2525816)
chr4 (133-178)||(12124836-12124881)
chr4 (133-178)||(12126892-12126937)
chr4 (125-190)||(55907434-55907499)
chr4 (132-184)||(2486313-2486365)
chr4 (132-184)||(5035628-5035680)
chr4 (144-190)||(1547469-1547515)
chr4 (126-176)||(2376228-2376278)
chr4 (132-170)||(2380123-2380161)
chr4 (129-178)||(2472104-2472153)
chr4 (123-163)||(8445271-8445311)
chr4 (143-183)||(12121009-12121049)
[»] chr3 (2 HSPs)
chr3 (123-190)||(513426-513493)
chr3 (125-176)||(51763146-51763197)
[»] chr6 (5 HSPs)
chr6 (124-184)||(14821628-14821688)
chr6 (132-184)||(6395781-6395833)
chr6 (132-180)||(6427432-6427480)
chr6 (144-178)||(6437161-6437195)
chr6 (142-184)||(7993319-7993361)
[»] chr8 (2 HSPs)
chr8 (125-184)||(32152212-32152271)
chr8 (132-178)||(39516869-39516915)
[»] chr2 (2 HSPs)
chr2 (125-190)||(1036176-1036241)
chr2 (125-178)||(44575177-44575230)
[»] chr1 (3 HSPs)
chr1 (135-184)||(15837967-15838016)
chr1 (125-184)||(33161439-33161498)
chr1 (132-176)||(52085556-52085600)


Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 32268983 - 32268817
Alignment:
Q  1 gaagaagaagaacattggggtccagtgatgaaaaaagaagaagaaaatcaatgatttctggttcatatctaccagatgagtgttgggaatgtgtcttcaa 100  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  32268983 gaagaagaagaacattgcggtccagtgatgcaaaaagaagaagaaaatcaatgatttctggttcatatttaccagatgagtgttgggaatgtgtcttcaa 32268884  T
Q  101 attcttgaaagacaacaatcgatgcttgaaatctctctccatcgtctccaaacagttactctccatc 167  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32268883 attcttgaaagacaacaatcgatgcttgaaatctctctccatcgtctccaaacagttactctccatc 32268817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 33 - 191
Target Start/End: Original strand, 41900158 - 41900316
Alignment:
Q  33 aaaagaagaagaaaatcaatgatttctggttcatatctaccagatgagtgttgggaatgtgtcttcaaattcttgaaagacaacaatcgatgcttgaaat 132  Q
    |||| |||||||||||| || | ||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||| | ||||  | ||||||||    
T  41900158 aaaaaaagaagaaaatcgataagttctggttcatatttaccagatgagtgttgggaatgtgtcttcaaattcctcaaagacgataatcactacttgaaat 41900257  T
Q  133 ctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctctt 191  Q
    |||||||  |||||||||||||||| |||||||||||||||  ||||||||| ||||||    
T  41900258 ctctctcactcgtctccaaacagtttctctccatcaccaacactcttcgattctctctt 41900316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 32268825 - 32268755
Alignment:
Q  135 ctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctctttcacagtctatgatcc 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||    
T  32268825 ctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgat--tctctctcacagtctatgatcc 32268755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 41 - 116
Target Start/End: Original strand, 41886271 - 41886346
Alignment:
Q  41 aagaaaatcaatgatttctggttcatatctaccagatgagtgttgggaatgtgtcttcaaattcttgaaagacaac 116  Q
    ||||||| ||||||||  |||||  ||| |||| |||||||||||||||||||||||||||||| |||||||||||    
T  41886271 aagaaaaacaatgattggtggtttctatttacctgatgagtgttgggaatgtgtcttcaaattcctgaaagacaac 41886346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 12846992 - 12846943
Alignment:
Q  134 tctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgat 183  Q
    ||||||| |||| ||||| ||||| |||||||||||||||||||| ||||    
T  12846992 tctctccctcgtttccaagcagttcctctccatcaccaaccgtctccgat 12846943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 123 - 190
Target Start/End: Original strand, 15091347 - 15091414
Alignment:
Q  123 tgcttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 190  Q
    |||||||| ||||||||| |||||||||||||||| ||||||||||||||| |||||| ||| |||||    
T  15091347 tgcttgaattctctctccctcgtctccaaacagttcctctccatcaccaacagtcttctattttctct 15091414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 125 - 187
Target Start/End: Original strand, 10168806 - 10168868
Alignment:
Q  125 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatc 187  Q
    |||||| ||||| ||| | |||||||||||||| |||||||||||||||  ||||||||||||    
T  10168806 cttgaattctctatcccttgtctccaaacagttcctctccatcaccaacactcttcgattatc 10168868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 125 - 187
Target Start/End: Original strand, 10176331 - 10176393
Alignment:
Q  125 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatc 187  Q
    |||||| ||||| ||| | |||||||||||||| |||||||||||||||  ||||||||||||    
T  10176331 cttgaattctctatcccttgtctccaaacagttcctctccatcaccaacactcttcgattatc 10176393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 10616250 - 10616209
Alignment:
Q  62 ttcatatctaccagatgagtgttgggaatgtgtcttcaaatt 103  Q
    ||||||| |||| |||||||||||||||||| ||||||||||    
T  10616250 ttcatatttacctgatgagtgttgggaatgtatcttcaaatt 10616209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 2460658 - 2460597
Alignment:
Q  129 aaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 190  Q
    |||||||||||||| |||||||||||||| |||||||||||||| ||||| ||||| |||||    
T  2460658 aaatctctctccatggtctccaaacagttcctctccatcaccaatcgtctccgattctctct 2460597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 184
Target Start/End: Original strand, 2367656 - 2367729
Alignment:
Q  111 gacaacaatcgatgcttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 184  Q
    |||||||| || | |||| || |||| ||||||||||||||||| || |||||||||||||||||||| |||||    
T  2367656 gacaacaaccgctacttggaacctctttccatcgtctccaaacaatttctctccatcaccaaccgtctccgatt 2367729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 178
Target Start/End: Complemental strand, 2547593 - 2547544
Alignment:
Q  129 aaatctctctccatcgtctccaaacagttactctccatcaccaaccgtct 178  Q
    ||||| ||||||||||||||||||||||| || |||||||||||||||||    
T  2547593 aaatcgctctccatcgtctccaaacagtttctgtccatcaccaaccgtct 2547544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 2381378 - 2381430
Alignment:
Q  132 tctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 184  Q
    ||||| |||||||||||||||||||||||||| ||||||||| |||| |||||    
T  2381378 tctctttccatcgtctccaaacagttactctcgatcaccaacagtctccgatt 2381430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 6007725 - 6007665
Alignment:
Q  130 aatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 190  Q
    ||||||||||| ||||||| |||||||| ||||||||||||||| |||| ||||| |||||    
T  6007725 aatctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctctct 6007665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 566687 - 566629
Alignment:
Q  126 ttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 184  Q
    ||||| ||||||||| | |||||||||||||| |||||||||||| || ||||||||||    
T  566687 ttgaattctctctccttagtctccaaacagtttctctccatcaccgacagtcttcgatt 566629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 2525816 - 2525763
Alignment:
Q  131 atctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 184  Q
    |||||||||| ||||||| |||||||| || |||||||||||| ||||||||||    
T  2525816 atctctctccctcgtctcaaaacagtttctgtccatcaccaacagtcttcgatt 2525763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 178
Target Start/End: Complemental strand, 12124881 - 12124836
Alignment:
Q  133 ctctctccatcgtctccaaacagttactctccatcaccaaccgtct 178  Q
    |||||||||| ||||||||||| || ||||||||||||||||||||    
T  12124881 ctctctccattgtctccaaacaatttctctccatcaccaaccgtct 12124836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 178
Target Start/End: Complemental strand, 12126937 - 12126892
Alignment:
Q  133 ctctctccatcgtctccaaacagttactctccatcaccaaccgtct 178  Q
    |||||||||| ||||||||||| || ||||||||||||||||||||    
T  12126937 ctctctccattgtctccaaacaatttctctccatcaccaaccgtct 12126892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 190
Target Start/End: Original strand, 55907434 - 55907499
Alignment:
Q  125 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 190  Q
    ||||||||||||||| | ||||||||||||||| |||||  ||||||||  ||||||||| |||||    
T  55907434 cttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctct 55907499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 184
Target Start/End: Complemental strand, 2486365 - 2486313
Alignment:
Q  132 tctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 184  Q
    ||||||||| ||||||| |||||||| || ||||||||||||||||| |||||    
T  2486365 tctctctccctcgtctcaaaacagtttctgtccatcaccaaccgtctccgatt 2486313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 184
Target Start/End: Complemental strand, 5035680 - 5035628
Alignment:
Q  132 tctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 184  Q
    ||||| ||| |||| || |||||||| ||||||||||||||||||||||||||    
T  5035680 tctctttccttcgtttcaaaacagtttctctccatcaccaaccgtcttcgatt 5035628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 190
Target Start/End: Original strand, 1547469 - 1547515
Alignment:
Q  144 gtctccaaacagttactctccatcaccaaccgtcttcgattatctct 190  Q
    ||||||||||| || |||||||||||||||||||| ||||| |||||    
T  1547469 gtctccaaacaattcctctccatcaccaaccgtctccgattctctct 1547515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 2376228 - 2376278
Alignment:
Q  126 ttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgt 176  Q
    ||||| |||||||||||||||||||||   || ||||||||||||||||||    
T  2376228 ttgaagtctctctccatcgtctccaaaacttttctctccatcaccaaccgt 2376278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 170
Target Start/End: Original strand, 2380123 - 2380161
Alignment:
Q  132 tctctctccatcgtctccaaacagttactctccatcacc 170  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  2380123 tctctttccatcgtctccaaacagttactctcgatcacc 2380161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 178
Target Start/End: Complemental strand, 2472153 - 2472104
Alignment:
Q  129 aaatctctctccatcgtctccaaacagttactctccatcaccaaccgtct 178  Q
    |||||||| ||||| ||||||||||||||  ||||||||||||| |||||    
T  2472153 aaatctctttccatggtctccaaacagtttttctccatcaccaatcgtct 2472104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 163
Target Start/End: Original strand, 8445271 - 8445311
Alignment:
Q  123 tgcttgaaatctctctccatcgtctccaaacagttactctc 163  Q
    ||||| || ||||||||||||||||| ||||||||||||||    
T  8445271 tgcttaaagtctctctccatcgtctcaaaacagttactctc 8445311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 12121009 - 12121049
Alignment:
Q  143 cgtctccaaacagttactctccatcaccaaccgtcttcgat 183  Q
    |||||| || ||||| |||||||||||||||||||||||||    
T  12121009 cgtctcaaagcagttcctctccatcaccaaccgtcttcgat 12121049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 123 - 190
Target Start/End: Original strand, 513426 - 513493
Alignment:
Q  123 tgcttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 190  Q
    ||||||||||||||||||  |||||| ||||||||||||||||||||||||  ||| ||||| |||||    
T  513426 tgcttgaaatctctctccgccgtctcaaaacagttactctccatcaccaacaatctccgattctctct 513493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 176
Target Start/End: Original strand, 51763146 - 51763197
Alignment:
Q  125 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgt 176  Q
    |||||| |||||||||||||| ||||||||||| |||||||||||| |||||    
T  51763146 cttgaattctctctccatcgtttccaaacagttcctctccatcacccaccgt 51763197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 14821688 - 14821628
Alignment:
Q  124 gcttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 184  Q
    ||||||||| ||||||| |||||||||| ||||| ||||| |||||||| |||||||||||    
T  14821688 gcttgaaatgtctctccctcgtctccaagcagttcctctctatcaccaatcgtcttcgatt 14821628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 184
Target Start/End: Complemental strand, 6395833 - 6395781
Alignment:
Q  132 tctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 184  Q
    ||||||||| |||||||||| ||||| |||||||||||||| | |||||||||    
T  6395833 tctctctccctcgtctccaagcagttcctctccatcaccaatcatcttcgatt 6395781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 6427480 - 6427432
Alignment:
Q  132 tctctctccatcgtctccaaacagttactctccatcaccaaccgtcttc 180  Q
    ||||||||| |||||||||| ||||| |||||||||||||| |||||||    
T  6427480 tctctctccctcgtctccaagcagttcctctccatcaccaatcgtcttc 6427432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Complemental strand, 6437195 - 6437161
Alignment:
Q  144 gtctccaaacagttactctccatcaccaaccgtct 178  Q
    |||||||||||||| ||||||||||||||||||||    
T  6437195 gtctccaaacagttcctctccatcaccaaccgtct 6437161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 184
Target Start/End: Original strand, 7993319 - 7993361
Alignment:
Q  142 tcgtctccaaacagttactctccatcaccaaccgtcttcgatt 184  Q
    |||||||||||||||| ||||||||||||| |||||| |||||    
T  7993319 tcgtctccaaacagttcctctccatcaccagccgtctccgatt 7993361  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 184
Target Start/End: Complemental strand, 32152271 - 32152212
Alignment:
Q  125 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 184  Q
    |||||| || |||||| |||||||||||||||| ||||||||||||||| |||| |||||    
T  32152271 cttgaattcactctccctcgtctccaaacagttcctctccatcaccaacagtctccgatt 32152212  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 39516915 - 39516869
Alignment:
Q  132 tctctctccatcgtctccaaacagttactctccatcaccaaccgtct 178  Q
    ||||||||||||||||||| ||| || ||| ||||||||||||||||    
T  39516915 tctctctccatcgtctccagacaatttctcgccatcaccaaccgtct 39516869  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 190
Target Start/End: Original strand, 1036176 - 1036241
Alignment:
Q  125 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 190  Q
    ||||||||||||||| | ||||||||||||||| |||||  ||||||||  ||||||||| |||||    
T  1036176 cttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctct 1036241  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 44575177 - 44575230
Alignment:
Q  125 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtct 178  Q
    |||||| ||||||||||||||||| |||||||| ||||| |||||||| |||||    
T  44575177 cttgaagtctctctccatcgtctcaaaacagtttctctcaatcaccaatcgtct 44575230  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 15837967 - 15838016
Alignment:
Q  135 ctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 184  Q
    ||||| || |||||||||||||| |||||||||||||||||||| |||||    
T  15837967 ctctcgatggtctccaaacagtttctctccatcaccaaccgtctccgatt 15838016  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 184
Target Start/End: Complemental strand, 33161498 - 33161439
Alignment:
Q  125 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 184  Q
    |||||| ||||| ||| |||||||||||||||| ||||||||||| ||  ||||||||||    
T  33161498 cttgaattctctatccctcgtctccaaacagtttctctccatcactaatagtcttcgatt 33161439  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 52085600 - 52085556
Alignment:
Q  132 tctctctccatcgtctccaaacagttactctccatcaccaaccgt 176  Q
    ||||| ||||||||||||||| |||| || |||||||||||||||    
T  52085600 tctctttccatcgtctccaaaaagttcctttccatcaccaaccgt 52085556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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