View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_284 (Length: 227)
Name: NF8905A_low_284
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_284 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 179681 - 179455
Alignment:
| Q |
1 |
aggcaactggtgtattaggacgttgatatcgaacattgcacctagtttagcaaaatagtcagcactttgatttccttcccggagggtgtggttgagcgaa |
100 |
Q |
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| T |
179681 |
aggcgactggtgtattagaacgttgacatctgacattgcacctagtttagccaaatagtcagcactttgatttccttcccggagggtgtggttgagcgaa |
179582 |
T |
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| Q |
101 |
aaattctttagagaaagcttgtctctgatgtcttggataagggctacatgaatatggaactttgagctggtggtattgatgagattaattgaaaggagag |
200 |
Q |
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| T |
179581 |
aaattccttagagaaagcttgtctctgatatcttggattagggccgcatgaatatggaactttgaactggtggtagtgatgagattaattgaaaggagag |
179482 |
T |
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| Q |
201 |
aatctaaataaaccgccatgtctgtga |
227 |
Q |
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| T |
179481 |
aatctgaataaaccgccatatctgtga |
179455 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 213
Target Start/End: Original strand, 45440000 - 45440036
Alignment:
| Q |
177 |
tgatgagattaattgaaaggagagaatctaaataaac |
213 |
Q |
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| T |
45440000 |
tgatgaggttaattgaaaggagggaatctaaataaac |
45440036 |
T |
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