View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8905A_low_285 (Length: 227)

Name: NF8905A_low_285
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8905A_low_285
NF8905A_low_285
[»] chr7 (15 HSPs)
chr7 (21-171)||(30480689-30480839)
chr7 (35-163)||(3987239-3987366)
chr7 (53-171)||(36068102-36068219)
chr7 (53-165)||(6733139-6733249)
chr7 (88-165)||(32390891-32390967)
chr7 (87-155)||(6733073-6733141)
chr7 (80-170)||(3986579-3986667)
chr7 (53-163)||(24240589-24240699)
chr7 (108-156)||(3346026-3346073)
chr7 (35-171)||(36067301-36067435)
chr7 (188-227)||(30480636-30480675)
chr7 (115-166)||(41589267-41589317)
chr7 (112-142)||(32390008-32390038)
chr7 (87-155)||(20573480-20573545)
chr7 (49-149)||(34894214-34894314)
[»] chr3 (17 HSPs)
chr3 (35-171)||(50838253-50838389)
chr3 (35-171)||(43546371-43546507)
chr3 (35-170)||(54560812-54560947)
chr3 (35-171)||(54560038-54560175)
chr3 (35-170)||(1576491-1576626)
chr3 (42-170)||(1577506-1577633)
chr3 (35-171)||(47471470-47471606)
chr3 (35-170)||(50837465-50837599)
chr3 (35-155)||(31800375-31800494)
chr3 (112-171)||(47470776-47470835)
chr3 (55-168)||(35942774-35942887)
chr3 (112-165)||(50381934-50381987)
chr3 (114-169)||(28539353-28539407)
chr3 (55-171)||(35942123-35942241)
chr3 (53-155)||(50382750-50382852)
chr3 (112-165)||(31799552-31799604)
chr3 (72-152)||(42078646-42078727)
[»] chr6 (8 HSPs)
chr6 (35-171)||(6009422-6009558)
chr6 (35-171)||(17732810-17732946)
chr6 (26-171)||(15347428-15347574)
chr6 (26-170)||(17732011-17732155)
chr6 (35-171)||(30709496-30709630)
chr6 (35-171)||(30710273-30710408)
chr6 (35-166)||(15348196-15348326)
chr6 (35-170)||(6008646-6008781)
[»] chr4 (15 HSPs)
chr4 (35-171)||(27454922-27455057)
chr4 (53-171)||(21225821-21225938)
chr4 (35-170)||(621531-621666)
chr4 (35-170)||(620475-620610)
chr4 (87-165)||(11147802-11147880)
chr4 (43-171)||(21224258-21224385)
chr4 (53-165)||(31633613-31633724)
chr4 (35-170)||(49681269-49681402)
chr4 (51-166)||(49682032-49682145)
chr4 (112-171)||(27455708-27455767)
chr4 (87-165)||(11148097-11148174)
chr4 (114-165)||(31632464-31632515)
chr4 (102-168)||(21226521-21226586)
chr4 (112-148)||(31779814-31779850)
chr4 (96-155)||(42388952-42389009)
[»] chr8 (8 HSPs)
chr8 (35-170)||(14791449-14791584)
chr8 (35-171)||(20112271-20112406)
chr8 (35-171)||(14790677-14790814)
chr8 (35-168)||(20111497-20111629)
chr8 (35-166)||(26544533-26544661)
chr8 (112-154)||(45105525-45105567)
chr8 (87-139)||(36336401-36336453)
chr8 (87-139)||(36338519-36338571)
[»] chr5 (16 HSPs)
chr5 (35-170)||(5348501-5348636)
chr5 (53-171)||(36429305-36429423)
chr5 (49-171)||(36681845-36681965)
chr5 (35-171)||(5347728-5347865)
chr5 (53-170)||(31808300-31808417)
chr5 (55-171)||(7491273-7491392)
chr5 (55-171)||(29500033-29500150)
chr5 (112-171)||(36430060-36430119)
chr5 (51-171)||(7493203-7493325)
chr5 (55-164)||(10326845-10326955)
chr5 (53-170)||(29500700-29500817)
chr5 (102-171)||(36681108-36681175)
chr5 (35-163)||(33136590-33136718)
chr5 (53-128)||(971278-971351)
chr5 (101-157)||(27597421-27597477)
chr5 (111-155)||(21012421-21012464)
[»] chr2 (9 HSPs)
chr2 (35-171)||(4592632-4592769)
chr2 (85-170)||(4593399-4593484)
chr2 (54-168)||(33002900-33003013)
chr2 (49-170)||(10256485-10256605)
chr2 (54-147)||(33003738-33003831)
chr2 (111-171)||(10255750-10255810)
chr2 (53-166)||(22539113-22539223)
chr2 (54-148)||(4474626-4474719)
chr2 (96-145)||(32946714-32946763)
[»] scaffold0102 (2 HSPs)
scaffold0102 (50-171)||(33138-33260)
scaffold0102 (35-171)||(32356-32493)
[»] chr1 (11 HSPs)
chr1 (42-169)||(36475284-36475411)
chr1 (35-171)||(47445769-47445907)
chr1 (35-170)||(36475966-36476101)
chr1 (53-170)||(27585314-27585429)
chr1 (53-168)||(47445011-47445126)
chr1 (50-168)||(27585983-27586099)
chr1 (55-164)||(5158677-5158785)
chr1 (50-140)||(786755-786846)
chr1 (53-154)||(45575952-45576051)
chr1 (54-137)||(45577293-45577376)
chr1 (102-165)||(787949-788011)
[»] scaffold0169 (1 HSPs)
scaffold0169 (114-165)||(27403-27453)
[»] scaffold0020 (1 HSPs)
scaffold0020 (112-163)||(2029-2080)


Alignment Details
Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 21 - 171
Target Start/End: Complemental strand, 30480839 - 30480689
Alignment:
Q  21 tcaccttatgaattaataggtaaaaactcccttgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgt 120  Q
    ||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||| ||||||||||    
T  30480839 tcaccttatgaattaataggtaaaa-ctcttttgaaattgtaactttcgtaaaaaattcccttgatttttaagatacttcaaaaaatcccttgaaattgt 30480741  T
Q  121 caaacgttagtcaattatccccctccgttt-gtttttgctgttaaatgacta 171  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  30480740 caaacgttagtcaattatccccctccgtttggttttggctgttaaatgacta 30480689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 35 - 163
Target Start/End: Complemental strand, 3987366 - 3987239
Alignment:
Q  35 aataggtaaaaactcccttgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaa 134  Q
    |||||| |||||  ||| |||||||||||||||||| |||||||  | | |||||||||| |||| ||||||  | ||||||||||||||||||||||||    
T  3987366 aataggcaaaaagccccctgaaattgtaactttcgtcaaaaatcctcctgatttttaagaaacttaaaaaaaaaccttgaaattgtcaaacgttagtcaa 3987267  T
Q  135 ttatccccctccgtttgtttttgctgtta 163  Q
    ||| ||||||||||||||||| |||||||    
T  3987266 tta-ccccctccgtttgttttggctgtta 3987239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 53 - 171
Target Start/End: Complemental strand, 36068219 - 36068102
Alignment:
Q  53 tgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaattatccccctccgtttgt 152  Q
    |||||||||| ||||||| ||||| | || | ||||||| || | ||||||||| ||  ||||||||||||| |||||||||||| ||||||||||||||    
T  36068219 tgaaattgtagctttcgtcaaaaaaccccctgatttttaggaaatttcaaaaaaccccctgaaattgtcaaatgttagtcaattacccccctccgtttgt 36068120  T
Q  153 ttttgctgttaaatgacta 171  Q
    ||| ||| |||||||||||    
T  36068119 tttggct-ttaaatgacta 36068102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 53 - 165
Target Start/End: Complemental strand, 6733249 - 6733139
Alignment:
Q  53 tgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaattatccccctccgtttgt 152  Q
    |||||||||||||||||| |||||  ||| | |||||||||| |||| |||||| | ||||||||||||||||||||| |||||| |||||| ||||| |    
T  6733249 tgaaattgtaactttcgtcaaaaaaaaccctgatttttaagaaacttaaaaaaaac-tttgaaattgtcaaacgttagccaatta-cccccttcgtttat 6733152  T
Q  153 ttttgctgttaaa 165  Q
    ||| |||||||||    
T  6733151 tttggctgttaaa 6733139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 88 - 165
Target Start/End: Complemental strand, 32390967 - 32390891
Alignment:
Q  88 tttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaattatccccctccgtttgtttttgctgttaaa 165  Q
    ||||||| |||||||||| |||  ||||||| |||||||||||||||||| |||||||||||||||||  ||||||||    
T  32390967 tttaagaaacttcaaaaa-tcccctgaaattatcaaacgttagtcaattacccccctccgtttgttttgactgttaaa 32390891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 155
Target Start/End: Original strand, 6733073 - 6733141
Alignment:
Q  87 ttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaattatccccctccgtttgtttt 155  Q
    |||||| | |||||||||| |||  ||||||||| ||||||||||||||||||| ||||||||||||||    
T  6733073 ttttaaaaaacttcaaaaactcccatgaaattgttaaacgttagtcaattatcctcctccgtttgtttt 6733141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 80 - 170
Target Start/End: Original strand, 3986579 - 3986667
Alignment:
Q  80 ccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaattatccccctccgtttgtttttgctgttaaatgact 170  Q
    ||||||||||||||| | ||||||||| ||| | ||||||| ||| |||| |||||||  |||||||||||||||| | ||||||||||||    
T  3986579 ccttaatttttaagaaatttcaaaaaaccctctaaaattgtaaaatgttaatcaatta--cccctccgtttgttttggttgttaaatgact 3986667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 53 - 163
Target Start/End: Original strand, 24240589 - 24240699
Alignment:
Q  53 tgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaattatccccctccgtttgt 152  Q
    ||||||||||||||| || ||||| | |||| ||||||   |  |||||||||| ||  ||||||||| ||| |||||||||||| ||||||| || |||    
T  24240589 tgaaattgtaacttttgtcaaaaacccccttgatttttgcaaagcttcaaaaaaacccctgaaattgttaaatgttagtcaattacccccctctgtctgt 24240688  T
Q  153 ttttgctgtta 163  Q
    ||| |||||||    
T  24240689 tttggctgtta 24240699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 3346026 - 3346073
Alignment:
Q  108 cctttgaaattgtcaaacgttagtcaattatccccctccgtttgttttt 156  Q
    |||||||||||||||||||||||||||||| | |||||||||| |||||    
T  3346026 cctttgaaattgtcaaacgttagtcaatta-caccctccgttttttttt 3346073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 171
Target Start/End: Original strand, 36067301 - 36067435
Alignment:
Q  35 aataggtaaaaactcccttgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaa 134  Q
    |||||| |||||| | | |||||||||||||||||| ||||  | || | |||||||||| | || |||||| ||  ||||| | | |||| ||||||||    
T  36067301 aataggcaaaaaccctcctgaaattgtaactttcgtcaaaatcccccctgatttttaagaaattttaaaaaaccccctgaaa-tattaaacattagtcaa 36067399  T
Q  135 ttatccccctccgtttgtttttgctgttaaatgacta 171  Q
    ||| |||||||||||| |||| || ||||||||||||    
T  36067400 tta-ccccctccgtttattttggccgttaaatgacta 36067435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 30480675 - 30480636
Alignment:
Q  188 ttcatcttccttctacttttttcatcatcttaattaatat 227  Q
    ||||||||||||| |||||||||||||||||||| |||||    
T  30480675 ttcatcttccttccacttttttcatcatcttaatcaatat 30480636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 41589267 - 41589317
Alignment:
Q  115 aattgtcaaacgttagtcaattatccccctccgtttgtttttgctgttaaat 166  Q
    |||| |||||||||||||||||| ||||||| ||||||||| ||||||||||    
T  41589267 aattatcaaacgttagtcaatta-ccccctctgtttgttttggctgttaaat 41589317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 142
Target Start/End: Original strand, 32390008 - 32390038
Alignment:
Q  112 tgaaattgtcaaacgttagtcaattatcccc 142  Q
    |||||||||||||||||||||||||||||||    
T  32390008 tgaaattgtcaaacgttagtcaattatcccc 32390038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 155
Target Start/End: Original strand, 20573480 - 20573545
Alignment:
Q  87 ttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaattatccccctccgtttgtttt 155  Q
    |||||||| ||||||||||| |||||||||||||| |||||  ||||||||  ||||| ||||||||||    
T  20573480 ttttaagaaacttcaaaaaaacctttgaaattgtc-aacgtatgtcaatta--ccccttcgtttgtttt 20573545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 149
Target Start/End: Original strand, 34894214 - 34894314
Alignment:
Q  49 cccttgaaattgtaactttcgtaaaaaat-caccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaattatccccctccg 147  Q
    |||||||||||||| ||||||| |||||| | ||| ||||||  | | ||||||||||| ||  |||||||||||||||| |||||| || |||| ||||    
T  34894214 cccttgaaattgtagctttcgtcaaaaattctcctgaattttgcaaa-acttcaaaaaaacccctgaaattgtcaaacgtcagtcaaatacccccatccg 34894312  T
Q  148 tt 149  Q
    ||    
T  34894313 tt 34894314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 35 - 171
Target Start/End: Complemental strand, 50838389 - 50838253
Alignment:
Q  35 aataggtaaaaactcccttgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaa 134  Q
    |||||| |||||  ||| |||||||||||||||||| ||||| | || |||||||||||| |||||||||| |||  ||||||| |||||||||||||||    
T  50838389 aataggcaaaaatccccctgaaattgtaactttcgtcaaaaacccccctaatttttaagaaacttcaaaaactcccctgaaattatcaaacgttagtcaa 50838290  T
Q  135 ttatccccctccgtttgtttttgctgttaaatgacta 171  Q
    ||| ||||||||||||||||| |||||||||||||||    
T  50838289 ttacccccctccgtttgttttggctgttaaatgacta 50838253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 35 - 171
Target Start/End: Original strand, 43546371 - 43546507
Alignment:
Q  35 aataggtaaaaactcccttgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaa 134  Q
    |||||| |||||||||  |||||||||||||||||| |||||||  | | |||||||||| ||||||||||  ||| ||||||| |||||||| ||||||    
T  43546371 aataggcaaaaactcctctgaaattgtaactttcgtcaaaaatcttcctgatttttaagaaacttcaaaaacccctctgaaattatcaaacgtcagtcaa 43546470  T
Q  135 ttatccccctccgtttgtttttgctgttaaatgacta 171  Q
    ||| ||||||||||||||||| |||||||||||||||    
T  43546471 ttacccccctccgtttgttttggctgttaaatgacta 43546507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 35 - 170
Target Start/End: Complemental strand, 54560947 - 54560812
Alignment:
Q  35 aataggtaaaaactcccttgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaa 134  Q
    |||||| |||||| ||| |||||||||| ||||||| ||||| | || | ||||||| || ||||||||||| ||  |||||||| ||||||||||||||    
T  54560947 aataggcaaaaacccccctgaaattgtagctttcgtcaaaaacccccctgatttttaggaaacttcaaaaaaccccctgaaattgacaaacgttagtcaa 54560848  T
Q  135 ttatccccctccgtttgtttttgctgttaaatgact 170  Q
    ||| ||||||||||||||||| ||||||||||||||    
T  54560847 ttacccccctccgtttgttttggctgttaaatgact 54560812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 35 - 171
Target Start/End: Original strand, 54560038 - 54560175
Alignment:
Q  35 aataggtaaaaactcccttgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaa 134  Q
    |||||| |||||| ||| |||||||||||||||||| ||||| | || | |||||||||| ||||||||||  ||  ||||||| |||||||||||||||    
T  54560038 aataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaacccccatgaaattatcaaacgttagtcaa 54560137  T
Q  135 ttatccccc-tccgtttgtttttgctgttaaatgacta 171  Q
    ||| ||||| |||||||||||| |||||||| ||||||    
T  54560138 ttaccccccttccgtttgttttggctgttaagtgacta 54560175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 35 - 170
Target Start/End: Original strand, 1576491 - 1576626
Alignment:
Q  35 aataggtaaaaactcccttgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaa 134  Q
    |||||| |||||| ||| |||||||||| ||||||| ||||| | || | ||||||| || ||||||||||  ||  |||||||| ||||||||||||||    
T  1576491 aataggcaaaaacccccctgaaattgtagctttcgtcaaaaacccccctgatttttaggaaacttcaaaaacccccctgaaattgacaaacgttagtcaa 1576590  T
Q  135 ttatccccctccgtttgtttttgctgttaaatgact 170  Q
    ||| ||||||||||||||||| ||| ||||||||||    
T  1576591 ttacccccctccgtttgttttggctattaaatgact 1576626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 42 - 170
Target Start/End: Complemental strand, 1577633 - 1577506
Alignment:
Q  42 aaaaactcccttgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaattatccc 141  Q
    |||||| ||| |||||||||| ||||||| ||||| | || | ||||||| || ||||||||||  || | ||||||| ||||||||||||||||| |||    
T  1577633 aaaaacccccctgaaattgtagctttcgtcaaaaacccccctgatttttaggaaacttcaaaaaccccct-gaaattgacaaacgttagtcaattacccc 1577535  T
Q  142 cctccgtttgtttttgctgttaaatgact 170  Q
    |||||||||||||| ||||||||||||||    
T  1577534 cctccgtttgttttggctgttaaatgact 1577506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 35 - 171
Target Start/End: Complemental strand, 47471606 - 47471470
Alignment:
Q  35 aataggtaaaaactcccttgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaa 134  Q
    |||||| |||||  |||||||||||||| ||||||| ||||  | || | ||||||| || ||||||||||  ||  |||||||| ||||||||||||||    
T  47471606 aataggcaaaaaaccccttgaaattgtagctttcgtcaaaaccccccctgatttttaggaaacttcaaaaacccccctgaaattgccaaacgttagtcaa 47471507  T
Q  135 ttatccccctccgtttgtttttgctgttaaatgacta 171  Q
    ||| ||||||| ||||||||| |||||||||||||||    
T  47471506 ttacccccctctgtttgttttggctgttaaatgacta 47471470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 35 - 170
Target Start/End: Original strand, 50837465 - 50837599
Alignment:
Q  35 aataggtaaaaactcccttgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaa 134  Q
    |||||| |||||  ||| |||||||||||||||||| ||||| | || | |||||||  | | ||||||||  || | ||||||| ||||||||||||||    
T  50837465 aataggcaaaaatccccctgaaattgtaactttcgtcaaaaacccccctgatttttagaaaatttcaaaaaccccct-gaaattgacaaacgttagtcaa 50837563  T
Q  135 ttatccccctccgtttgtttttgctgttaaatgact 170  Q
    ||| ||||||||||||||||| ||||||||||||||    
T  50837564 ttacccccctccgtttgttttggctgttaaatgact 50837599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 35 - 155
Target Start/End: Complemental strand, 31800494 - 31800375
Alignment:
Q  35 aataggtaaaaactcccttgaaattgtaactttcgt-aaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtca 133  Q
    |||||| ||||||||||  ||||||||||||||||| |||||||| || | |||||||||| ||||| |||| |||| | ||||||| ||||||||||||    
T  31800494 aataggcaaaaactcccccgaaattgtaactttcgtcaaaaaatc-ccatgatttttaagaaacttctaaaactcctataaaattgtgaaacgttagtca 31800396  T
Q  134 attatccccctccgtttgtttt 155  Q
     ||| |||||||||||||||||    
T  31800395 gtta-ccccctccgtttgtttt 31800375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 47470776 - 47470835
Alignment:
Q  112 tgaaattgtcaaacgttagtcaattatccccctccgtttgtttttgctgttaaatgacta 171  Q
    ||||||| |||||||| ||||||||| ||||||||||||||||| |||||||||||||||    
T  47470776 tgaaattatcaaacgtcagtcaattacccccctccgtttgttttggctgttaaatgacta 47470835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 168
Target Start/End: Complemental strand, 35942887 - 35942774
Alignment:
Q  55 aaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcct-ttgaaattgtcaaacgttagtcaattatccccctccgtttgtt 153  Q
    ||||||||| |||||| ||||||| ||| | |||| | || ||||||||||| ||  |||||||||| |||||||||||||||| |||||||| ||||||    
T  35942887 aaattgtaattttcgtcaaaaatcccctgactttt-atgaaacttcaaaaaaaccccttgaaattgttaaacgttagtcaattacccccctccatttgtt 35942789  T
Q  154 tttgctgttaaatga 168  Q
    || | ||||||||||    
T  35942788 ttggttgttaaatga 35942774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 50381934 - 50381987
Alignment:
Q  112 tgaaattgtcaaacgttagtcaattatccccctccgtttgtttttgctgttaaa 165  Q
    |||||||||||||||||||||||||| ||||||| ||||||||| |||||||||    
T  50381934 tgaaattgtcaaacgttagtcaattacccccctctgtttgttttggctgttaaa 50381987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 169
Target Start/End: Complemental strand, 28539407 - 28539353
Alignment:
Q  114 aaattgtcaaacgttagtcaattatccccctccgtttgtttttgctgttaaatgac 169  Q
    ||||||| ||||||||||||||||||| | |||||||||||| |||||||||||||    
T  28539407 aaattgttaaacgttagtcaattatcctc-tccgtttgttttggctgttaaatgac 28539353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 171
Target Start/End: Original strand, 35942123 - 35942241
Alignment:
Q  55 aaattgtaactttcgtaaaaaa-tcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaattatcc---ccctccgttt 150  Q
    |||||||||||||||| ||||| || ||| | ||||||||| |||| ||||  |||  ||||||||||||||||||||||| || ||   |||||| |||    
T  35942123 aaattgtaactttcgtcaaaaactctcctga-tttttaagaaactttaaaac-tcccctgaaattgtcaaacgttagtcaactaccccctccctccattt 35942220  T
Q  151 gtttttgctgttaaatgacta 171  Q
    ||||| |||||||||||||||    
T  35942221 gttttggctgttaaatgacta 35942241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 53 - 155
Target Start/End: Complemental strand, 50382852 - 50382750
Alignment:
Q  53 tgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaattatccccctccgtttgt 152  Q
    |||||| ||||||||||| |||||   || | | |||||||| |||||||| |  ||  |||||| ||||||||||||||||||| |||||| |||||||    
T  50382852 tgaaatcgtaactttcgtcaaaaactcccctgacttttaagaaacttcaaacacccccatgaaatggtcaaacgttagtcaattaccccccttcgtttgt 50382753  T
Q  153 ttt 155  Q
    |||    
T  50382752 ttt 50382750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 31799552 - 31799604
Alignment:
Q  112 tgaaattgtcaaacgttagtcaattatccccctccgtttgtttttgctgttaaa 165  Q
    ||||||||||||| |||||||||||| |||||||||||||||||  ||||||||    
T  31799552 tgaaattgtcaaatgttagtcaatta-ccccctccgtttgttttgactgttaaa 31799604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 152
Target Start/End: Complemental strand, 42078727 - 42078646
Alignment:
Q  72 aaaaatcaccttaatttttaagatacttcaaaaaa----tcctttgaaattgtcaaacgttagtcaattatccccctccgtttgt 152  Q
    ||||| |||| |||||||||||| |||||||||||    ||||   |||||||||||||||||||||||| ||||||||||||||    
T  42078727 aaaaaccaccctaatttttaagaaacttcaaaaaaaaaatccta--aaattgtcaaacgttagtcaatta-ccccctccgtttgt 42078646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 35 - 171
Target Start/End: Complemental strand, 6009558 - 6009422
Alignment:
Q  35 aataggtaaaaactcccttgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaa 134  Q
    |||||| |||||| ||||||||||| |||||||||| |||||    | | |||||||||| |||||||||| |||  ||||||| |||||||||||||||    
T  6009558 aataggcaaaaacccccttgaaattataactttcgtcaaaaactttcctgatttttaagaaacttcaaaaactcccctgaaattatcaaacgttagtcaa 6009459  T
Q  135 ttatccccctccgtttgtttttgctgttaaatgacta 171  Q
    ||||||| ||||||||||||| |||||||||||||||    
T  6009458 ttatccctctccgtttgttttggctgttaaatgacta 6009422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 35 - 171
Target Start/End: Complemental strand, 17732946 - 17732810
Alignment:
Q  35 aataggtaaaaactcccttgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaa 134  Q
    |||||| |||| | |||||||||||||||||||||| ||||| | || | |||||||||| ||||||||||  ||  ||||||| ||||||||||| |||    
T  17732946 aataggcaaaaccccccttgaaattgtaactttcgtcaaaaaaccccctgatttttaagaaacttcaaaaacccccctgaaattatcaaacgttagccaa 17732847  T
Q  135 ttatccccctccgtttgtttttgctgttaaatgacta 171  Q
    ||| ||||||||||||||||| |||||||||||||||    
T  17732846 ttacccccctccgtttgttttggctgttaaatgacta 17732810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 171
Target Start/End: Original strand, 15347428 - 15347574
Alignment:
Q  26 ttatgaattaataggtaaaaactcccttgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaac 125  Q
    |||||| | |||||| |||||| ||| |||||||||||||||||| ||||| | || | |||||||||| ||||||||||  ||  ||||||| ||||||    
T  15347428 ttatgagtaaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaacccccctgaaattatcaaac 15347527  T
Q  126 gttagtcaattatccccc-tccgtttgtttttgctgttaaatgacta 171  Q
    |||||||||||| ||||| |||||||||||| |||||||| ||||||    
T  15347528 gttagtcaattaccccccttccgtttgttttggctgttaagtgacta 15347574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 26 - 170
Target Start/End: Original strand, 17732011 - 17732155
Alignment:
Q  26 ttatgaattaataggtaaaaactcccttgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaac 125  Q
    |||||| | |||||| |||||| ||| ||||||||||  |||||| ||||||| || | |||||||  | | ||||||||| ||  |||||||| |||||    
T  17732011 ttatgagtaaataggcaaaaacccccctgaaattgtagttttcgtcaaaaatccccctgatttttagaaaatttcaaaaaaccccctgaaattgacaaac 17732110  T
Q  126 gttagtcaattatccccctccgtttgtttttgctgttaaatgact 170  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||    
T  17732111 gttagtcaattacccccctccgtttgttttggctgttaaatgact 17732155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 35 - 171
Target Start/End: Original strand, 30709496 - 30709630
Alignment:
Q  35 aataggtaaaaactcccttgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaa 134  Q
    |||||| |||||| ||  |||||||||||||||||| ||||||| || | |||||||||| ||||||||||  ||| ||||||| |||||||| |||| |    
T  30709496 aataggcaaaaacccctctgaaattgtaactttcgtcaaaaatccccctgatttttaagaaacttcaaaaacgcctctgaaattatcaaacgtcagtc-a 30709594  T
Q  135 ttatccccctccgtttgtttttgctgttaaatgacta 171  Q
    ||| ||||||||||||||||| |||||||||||||||    
T  30709595 tta-ccccctccgtttgttttggctgttaaatgacta 30709630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 35 - 171
Target Start/End: Complemental strand, 30710408 - 30710273
Alignment:
Q  35 aataggtaaaaactcccttgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaa 134  Q
    |||||| |||||| |||||||||||||| ||||||| ||||| | || | ||||||| || ||||||||||  || | ||||||| ||||||||||||||    
T  30710408 aataggcaaaaacccccttgaaattgtagctttcgtcaaaaacccccctgatttttaggaaacttcaaaaaccccct-gaaattgccaaacgttagtcaa 30710310  T
Q  135 ttatccccctccgtttgtttttgctgttaaatgacta 171  Q
    ||| |||| || ||||||||| |||||||||||||||    
T  30710309 ttacccccatctgtttgttttggctgttaaatgacta 30710273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 35 - 166
Target Start/End: Complemental strand, 15348326 - 15348196
Alignment:
Q  35 aataggtaaaaactcccttgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaa 134  Q
    |||||| | |||| ||| |||||||||| ||||||| ||||||| ||| | |||||| || ||||||||||| ||  |||||||| ||||||||||||||    
T  15348326 aataggcagaaacccccctgaaattgtagctttcgtcaaaaatcccctga-tttttaggaaacttcaaaaaaccccctgaaattgacaaacgttagtcaa 15348228  T
Q  135 ttatccccctccgtttgtttttgctgttaaat 166  Q
    ||| |||| |||||||||||| ||||||||||    
T  15348227 ttacccccttccgtttgttttggctgttaaat 15348196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 35 - 170
Target Start/End: Original strand, 6008646 - 6008781
Alignment:
Q  35 aataggtaaaaactcccttgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaa 134  Q
    |||||| |||||  ||| |||||||||| ||||||| ||||| | || | ||||||| || ||||||||||  ||  |||||||| ||||||||||||||    
T  6008646 aataggcaaaaaaacccctgaaattgtagctttcgtcaaaaacctccctgatttttaggaaacttcaaaaagccccctgaaattgacaaacgttagtcaa 6008745  T
Q  135 ttatccccctccgtttgtttttgctgttaaatgact 170  Q
    | | |||||||| |||||||| ||||||||||||||    
T  6008746 tcacccccctccatttgttttggctgttaaatgact 6008781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 35 - 171
Target Start/End: Original strand, 27454922 - 27455057
Alignment:
Q  35 aataggtaaaaactcccttgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaa 134  Q
    |||||| |||||| |||| ||||||||||||||||| ||||| | || | |||||||||| |||| |||||  ||||||||||| |||||||| ||||||    
T  27454922 aataggcaaaaaccccct-gaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttgaaaaacccctttgaaattatcaaacgtcagtcaa 27455020  T
Q  135 ttatccccctccgtttgtttttgctgttaaatgacta 171  Q
    ||| ||||||||||||||||| |||||||||||||||    
T  27455021 ttacccccctccgtttgttttggctgttaaatgacta 27455057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 53 - 171
Target Start/End: Original strand, 21225821 - 21225938
Alignment:
Q  53 tgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaattatccccctccgtttgt 152  Q
    |||||||||||||||||| |||||||  ||| |||||||||| |||| |||||  |||||||||||||||||| ||||||||||| ||| ||||||||||    
T  21225821 tgaaattgtaactttcgtcaaaaatcttcttgatttttaagaaactttaaaaacacctttgaaattgtcaaaccttagtcaatta-ccctctccgtttgt 21225919  T
Q  153 ttttgctgttaaatgacta 171  Q
    ||| |||||||||||||||    
T  21225920 tttggctgttaaatgacta 21225938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 35 - 170
Target Start/End: Complemental strand, 621666 - 621531
Alignment:
Q  35 aataggtaaaaactcccttgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaa 134  Q
    |||||| |||||| ||| |||||||||| ||||||| ||||| | || | ||||||| || ||||||||||  ||  |||||||| ||||||||||||||    
T  621666 aataggcaaaaacccccctgaaattgtagctttcgtcaaaaacccccctgatttttaggaaacttcaaaaacccccctgaaattgacaaacgttagtcaa 621567  T
Q  135 ttatccccctccgtttgtttttgctgttaaatgact 170  Q
    ||| ||||||||||||||||| ||||||||||||||    
T  621566 ttacccccctccgtttgttttggctgttaaatgact 621531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 35 - 170
Target Start/End: Original strand, 620475 - 620610
Alignment:
Q  35 aataggtaaaaactcccttgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaa 134  Q
    |||||| |||||| ||  ||||||||||  |||||| ||||||| || | ||||||| || ||||||||||  ||  |||||||| ||||||||||||||    
T  620475 aataggcaaaaacccctctgaaattgtagttttcgtcaaaaatccccctgatttttaggaaacttcaaaaacccccctgaaattgacaaacgttagtcaa 620574  T
Q  135 ttatccccctccgtttgtttttgctgttaaatgact 170  Q
    ||| ||||||||||||||||| ||||||||||||||    
T  620575 ttacccccctccgtttgttttggctgttaaatgact 620610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 87 - 165
Target Start/End: Original strand, 11147802 - 11147880
Alignment:
Q  87 ttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaattatccccctccgtttgtttttgctgttaaa 165  Q
    |||||||| |||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  11147802 ttttaagaaacttcaaaaattcccttgaaattgtcaaacgttagtcaattacccccctccgtttgttttggctgttaaa 11147880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 43 - 171
Target Start/End: Original strand, 21224258 - 21224385
Alignment:
Q  43 aaaactcccttgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaattatcccc 142  Q
    ||||||| | ||||||||||||||||||||||||||    | |||||||| | | ||||||||  ||| |||||||||||||| ||||||||||  |||     
T  21224258 aaaactcgcctgaaattgtaactttcgtaaaaaatctttctgatttttaaaaaatttcaaaaacacctatgaaattgtcaaaccttagtcaatt-cccct 21224356  T
Q  143 ctccgtttgtttttgctgttaaatgacta 171  Q
    |||||||| |||| |||||||||||||||    
T  21224357 ctccgtttattttggctgttaaatgacta 21224385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 53 - 165
Target Start/End: Complemental strand, 31633724 - 31633613
Alignment:
Q  53 tgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaattatccccctccgtttgt 152  Q
    |||||||| || |||||| ||||| | ||||||||||||||| ||||||||||  ||  | |||||||||||| |||||| |||| ||||||||||||||    
T  31633724 tgaaattggaagtttcgtcaaaaacccccttaatttttaagaaacttcaaaaacccccataaaattgtcaaacattagtccatta-ccccctccgtttgt 31633626  T
Q  153 ttttgctgttaaa 165  Q
    ||  |||||||||    
T  31633625 ttgggctgttaaa 31633613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 35 - 170
Target Start/End: Original strand, 49681269 - 49681402
Alignment:
Q  35 aataggtaaaaactcccttgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaa 134  Q
    |||||| |||||||||| | |||||||| |||| || |||||   || | |||||||  | ||||||||||  ||| ||||||||||||||| |||| ||    
T  49681269 aataggcaaaaactcccct-aaattgtagcttttgtcaaaaactcccctgatttttagaaaacttcaaaaacccctctgaaattgtcaaacgctagttaa 49681367  T
Q  135 ttatccccctccgtttgtttttgctgttaaatgact 170  Q
    |||| |||||||||||||||| ||||||||||||||    
T  49681368 ttat-cccctccgtttgttttggctgttaaatgact 49681402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 51 - 166
Target Start/End: Complemental strand, 49682145 - 49682032
Alignment:
Q  51 cttgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaattatccccctccgttt 150  Q
    |||||||||||||||||||| |||||   || |||||||||||| ||||| ||||||||  ||||||| |||| ||||||||||||| |||||||| |||    
T  49682145 cttgaaattgtaactttcgtcaaaaaattccctaatttttaagaaacttc-aaaaatcccctgaaattatcaatcgttagtcaatta-ccccctccattt 49682048  T
Q  151 gtttttgctgttaaat 166  Q
     |||| ||| ||||||    
T  49682047 attttggctattaaat 49682032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 112 - 171
Target Start/End: Complemental strand, 27455767 - 27455708
Alignment:
Q  112 tgaaattgtcaaacgttagtcaattatccccctccgtttgtttttgctgttaaatgacta 171  Q
    |||||||| |||| |||||||||||| ||||||||||||||||| || ||||||||||||    
T  27455767 tgaaattgccaaatgttagtcaattacccccctccgtttgttttggcagttaaatgacta 27455708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 87 - 165
Target Start/End: Complemental strand, 11148174 - 11148097
Alignment:
Q  87 ttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaattatccccctccgtttgtttttgctgttaaa 165  Q
    |||||||| ||||||||||  | | ||||||||||||| |||||||||||| ||||||||||||||||| | |||||||    
T  11148174 ttttaagaaacttcaaaaacccttatgaaattgtcaaatgttagtcaatta-ccccctccgtttgttttggttgttaaa 11148097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 165
Target Start/End: Original strand, 31632464 - 31632515
Alignment:
Q  114 aaattgtcaaacgttagtcaattatccccctccgtttgtttttgctgttaaa 165  Q
    |||||||||||||||||||||||  ||||||||||||||||  |||||||||    
T  31632464 aaattgtcaaacgttagtcaattgcccccctccgtttgtttgggctgttaaa 31632515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 102 - 168
Target Start/End: Complemental strand, 21226586 - 21226521
Alignment:
Q  102 aaaaatcctttgaaattgtcaaacgttagtcaattatccccctccgtttgtttttgctgttaaatga 168  Q
    ||||| ||| ||||||||| |||| ||||||||||| ||||||||||||||||| ||| ||||||||    
T  21226586 aaaaaccctctgaaattgttaaacattagtcaatta-ccccctccgtttgttttggctattaaatga 21226521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 31779814 - 31779850
Alignment:
Q  112 tgaaattgtcaaacgttagtcaattatccccctccgt 148  Q
    ||||||||| |||||||||||||||||||||||||||    
T  31779814 tgaaattgttaaacgttagtcaattatccccctccgt 31779850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 155
Target Start/End: Complemental strand, 42389009 - 42388952
Alignment:
Q  96 acttcaaaaaatcctttgaaattgtcaaacgttagtcaattatccccctccgtttgtttt 155  Q
    |||||||||||||| ||||||||||||||||||  |||| ||||||||| |||| |||||    
T  42389009 acttcaaaaaatcccttgaaattgtcaaacgtt--tcaaatatcccccttcgttagtttt 42388952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 35 - 170
Target Start/End: Complemental strand, 14791584 - 14791449
Alignment:
Q  35 aataggtaaaaactcccttgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaa 134  Q
    |||||| |||||| ||| |||||||||| ||||||| ||||| | || | ||||||| || ||||||||||| ||  |||||||| ||||||||||||||    
T  14791584 aataggcaaaaacccccctgaaattgtagctttcgtcaaaaacccccctgatttttaggaaacttcaaaaaaccccctgaaattgacaaacgttagtcaa 14791485  T
Q  135 ttatccccctccgtttgtttttgctgttaaatgact 170  Q
    ||| ||||||||||||||||| ||||||||||||||    
T  14791484 ttacccccctccgtttgttttggctgttaaatgact 14791449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 35 - 171
Target Start/End: Complemental strand, 20112406 - 20112271
Alignment:
Q  35 aataggtaaaaactcccttgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaa 134  Q
    |||||| |||||| ||  ||||||||||||||||||||||||   || | |||||||||| ||||||||||  ||  ||||||| |||||||||||||||    
T  20112406 aataggcaaaaacccctctgaaattgtaactttcgtaaaaaaaacccctgatttttaagaaacttcaaaaaccccactgaaattatcaaacgttagtcaa 20112307  T
Q  135 ttatccccctccgtttgtttttgctgttaaatgacta 171  Q
    ||| ||||||||||||||||| |||||||||||||||    
T  20112306 tta-ccccctccgtttgttttggctgttaaatgacta 20112271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 35 - 171
Target Start/End: Original strand, 14790677 - 14790814
Alignment:
Q  35 aataggtaaaaactcccttgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaa 134  Q
    |||||| |||||  ||| |||||||||||||||||| ||||| | || | |||||||||| ||||||||||  ||  ||||||| |||||||||||||||    
T  14790677 aataggcaaaaaaccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaacccccctgaaattatcaaacgttagtcaa 14790776  T
Q  135 ttatccccc-tccgtttgtttttgctgttaaatgacta 171  Q
    ||| ||||| |||||||||||| |||||||| ||||||    
T  14790777 ttaccccccttccgtttgttttggctgttaagtgacta 14790814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 35 - 168
Target Start/End: Original strand, 20111497 - 20111629
Alignment:
Q  35 aataggtaaaaactccc-ttgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctt-tgaaattgtcaaacgttagtc 132  Q
    |||||| |||||||||| ||| ||||||| ||||||| ||||  | || ||||||||| || | |||||||| ||||  | |||||||||||| ||||||    
T  20111497 aataggcaaaaactccccttgtaattgtagctttcgtcaaaa--ccccctaatttttaggaaatttcaaaaa-tcctcctaaaattgtcaaacattagtc 20111593  T
Q  133 aattatccccctccgtttgtttttgctgttaaatga 168  Q
    ||||| ||||||||||||||||| ||||||||||||    
T  20111594 aattacccccctccgtttgttttagctgttaaatga 20111629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 166
Target Start/End: Original strand, 26544533 - 26544661
Alignment:
Q  35 aataggtaaaaactcccttgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtc-a 133  Q
    ||||||||||||||| || |||||||||| ||| ||||||||||  |     |||||||| |||| |||||  || |||||||||||||||||||||| |    
T  26544533 aataggtaaaaactctct-gaaattgtaatttttgtaaaaaatcctcgc---ttttaagaaacttgaaaaacacccttgaaattgtcaaacgttagtcaa 26544628  T
Q  134 attatccccctccgtttgtttttgctgttaaat 166  Q
    |||| ||||||| ||||||||| ||| ||||||    
T  26544629 attaaccccctctgtttgttttggctattaaat 26544661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 154
Target Start/End: Original strand, 45105525 - 45105567
Alignment:
Q  112 tgaaattgtcaaacgttagtcaattatccccctccgtttgttt 154  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  45105525 tgaaattgtcaaacgttagtcaattacccccctccgtttgttt 45105567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 36336401 - 36336453
Alignment:
Q  87 ttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaattatc 139  Q
    |||||||| |||||||||| ||||||| ||||||  ||| |||||||||||||    
T  36336401 ttttaagaaacttcaaaaactcctttgcaattgtttaacattagtcaattatc 36336453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 36338571 - 36338519
Alignment:
Q  87 ttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaattatc 139  Q
    |||||||| ||||||||||  | | | ||||||||||||||||||||||||||    
T  36338571 ttttaagaaacttcaaaaacccttataaaattgtcaaacgttagtcaattatc 36338519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 35 - 170
Target Start/End: Complemental strand, 5348636 - 5348501
Alignment:
Q  35 aataggtaaaaactcccttgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaa 134  Q
    |||||| |||||| ||| |||||||||| ||||||| ||||| | || | ||||||| || ||||||||||| ||  |||||||| ||||||||||||||    
T  5348636 aataggcaaaaacccccctgaaattgtagctttcgtcaaaaacccccctgatttttaggaaacttcaaaaaaccccctgaaattgacaaacgttagtcaa 5348537  T
Q  135 ttatccccctccgtttgtttttgctgttaaatgact 170  Q
    ||| ||||||||||||||||| ||||||||||||||    
T  5348536 ttacccccctccgtttgttttggctgttaaatgact 5348501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 53 - 171
Target Start/End: Original strand, 36429305 - 36429423
Alignment:
Q  53 tgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaattatccccctccgtttgt 152  Q
    |||||||||||||||||| ||||||| || | |||||||||| ||||||||||  ||  ||||||| |||||||| ||||||||| ||||||||||||||    
T  36429305 tgaaattgtaactttcgtcaaaaatccccctgatttttaagaaacttcaaaaacgcccctgaaattatcaaacgtcagtcaattacccccctccgtttgt 36429404  T
Q  153 ttttgctgttaaatgacta 171  Q
    ||| |||||||||||||||    
T  36429405 tttggctgttaaatgacta 36429423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 49 - 171
Target Start/End: Complemental strand, 36681965 - 36681845
Alignment:
Q  49 cccttgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaattatccccctccgt 148  Q
    |||||||||||||||||||||| ||||||| || | |||||||| | ||||||||    ||  |||||||||||||||||||||||||| ||||||||||    
T  36681965 cccttgaaattgtaactttcgttaaaaatccccctgatttttaaaaaacttcaaacc--cccatgaaattgtcaaacgttagtcaattacccccctccgt 36681868  T
Q  149 ttgtttttgctgttaaatgacta 171  Q
    |||||||  ||||||||||||||    
T  36681867 ttgttttgactgttaaatgacta 36681845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 35 - 171
Target Start/End: Original strand, 5347728 - 5347865
Alignment:
Q  35 aataggtaaaaactcccttgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaa 134  Q
    |||||| |||||| ||  |||||||||||||||||| ||||| | || | |||||||||| ||||||||||  ||  ||||||| |||||||||||||||    
T  5347728 aataggcaaaaacccctctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaacccccctgaaattatcaaacgttagtcaa 5347827  T
Q  135 ttatccccc-tccgtttgtttttgctgttaaatgacta 171  Q
    ||| ||||| |||||||||||| |||||||| ||||||    
T  5347828 ttaccccccttccgtttgttttggctgttaagtgacta 5347865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 53 - 170
Target Start/End: Original strand, 31808300 - 31808417
Alignment:
Q  53 tgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaattatccccctccgtttgt 152  Q
    |||| ||||||||||||| ||||||  || | |||||||||| |||||||||| ||   ||||||||| |||||||||||||||| ||||||| ||||||    
T  31808300 tgaatttgtaactttcgtcaaaaatttccctgatttttaagaaacttcaaaaactctcctgaaattgttaaacgttagtcaattacccccctcagtttgt 31808399  T
Q  153 ttttgctgttaaatgact 170  Q
    ||| ||||||||||||||    
T  31808400 tttggctgttaaatgact 31808417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 55 - 171
Target Start/End: Original strand, 7491273 - 7491392
Alignment:
Q  55 aaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaat---cctttgaaattgtcaaacgttagtcaattatccccctccgtttg 151  Q
    |||||||||||||||| |||||||||| | | |||||||| |||| ||||||    ||  ||||||||| |||||||||||||||| |||||| ||||||    
T  7491273 aaattgtaactttcgtcaaaaatcaccctgacttttaagaaacttaaaaaaaaaaacccctgaaattgtgaaacgttagtcaattaccccccttcgtttg 7491372  T
Q  152 tttttgctgttaaatgacta 171  Q
    |||| |||||||||||||||    
T  7491373 ttttggctgttaaatgacta 7491392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 171
Target Start/End: Original strand, 29500033 - 29500150
Alignment:
Q  55 aaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctt-tgaaattgtcaaacgttagtcaattatccccctccgtttgtt 153  Q
    ||||| ||||||| || ||||||| || |||||||||||| |||||| |||   ||  | |||||||||||||||||||||||| ||| |||||||||||    
T  29500033 aaattataacttttgttaaaaatccccctaatttttaagaaacttcataaacctctcataaaattgtcaaacgttagtcaattacccctctccgtttgtt 29500132  T
Q  154 tttgctgttaaatgacta 171  Q
    || ||| |||||||||||    
T  29500133 ttggctcttaaatgacta 29500150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 112 - 171
Target Start/End: Complemental strand, 36430119 - 36430060
Alignment:
Q  112 tgaaattgtcaaacgttagtcaattatccccctccgtttgtttttgctgttaaatgacta 171  Q
    |||||||| ||||||||||||||||| |||| |||||||||||| |||||||||||||||    
T  36430119 tgaaattgccaaacgttagtcaattacccccatccgtttgttttggctgttaaatgacta 36430060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 171
Target Start/End: Complemental strand, 7493325 - 7493203
Alignment:
Q  51 cttgaaattgtaactttcgtaaaaaatca-ccttaatttttaagatacttcaaaaaa-tcctttgaaattgtcaaacgttagtcaattatccccctccgt 148  Q
    |||||||| |||||||||||||||||||  || |||||||||||| | ||||||||  |||  | |||||||||||  |||||||||||||  |||| ||    
T  7493325 cttgaaatcgtaactttcgtaaaaaatcctccctaatttttaagaaatttcaaaaacctcccataaaattgtcaaatattagtcaattatcttcctctgt 7493226  T
Q  149 ttgtttttgctgttaaatgacta 171  Q
    ||||||| | |||||||||||||    
T  7493225 ttgttttggttgttaaatgacta 7493203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 164
Target Start/End: Complemental strand, 10326955 - 10326845
Alignment:
Q  55 aaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcct-ttgaaattgtcaaacgttagtcaattatccccctccgtttgtt 153  Q
    |||||||||||||||| ||||| | || | |||||||||| |||| ||||||   | ||||||||||||||| |||||||| || |||||||||| ||||    
T  10326955 aaattgtaactttcgtcaaaaacctccatgatttttaagaaacttaaaaaaaaaatcttgaaattgtcaaacattagtcaactacccccctccgtctgtt 10326856  T
Q  154 tttgctgttaa 164  Q
    || ||||||||    
T  10326855 ttggctgttaa 10326845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 170
Target Start/End: Complemental strand, 29500817 - 29500700
Alignment:
Q  53 tgaaattgtaactttcgtaaaaaa-tcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaattatccccctccgtttg 151  Q
    ||||||| ||| |||||| ||||| || || ||| |||||||| | |||||||||  | ||||||||||||||||||||||||||| ||  |||||||||    
T  29500817 tgaaattataattttcgtcaaaaactccccataacttttaagaaagttcaaaaaaatccttgaaattgtcaaacgttagtcaatta-ccttctccgtttg 29500719  T
Q  152 tttttgctgttaaatgact 170  Q
    |||| | ||||||||||||    
T  29500718 ttttggttgttaaatgact 29500700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 102 - 171
Target Start/End: Original strand, 36681108 - 36681175
Alignment:
Q  102 aaaaatcctttgaaattgtcaaacgttagtcaattatccccctccgtttgtttttgctgttaaatgacta 171  Q
    ||||| |||||||||||||||||||||||||||||| |||||| |||| ||||| |||||||||||||||    
T  36681108 aaaaaccctttgaaattgtcaaacgttagtcaatta-ccccct-cgttcgttttggctgttaaatgacta 36681175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 163
Target Start/End: Complemental strand, 33136718 - 33136590
Alignment:
Q  35 aataggtaaaaactcccttgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaa 134  Q
    |||||| |||||  || |||||| ||||||||| || ||||| | || ||||||||   | |||||||||| |||  ||||||||| |||||||||||||    
T  33136718 aataggcaaaaatccctttgaaagtgtaacttttgtcaaaaaactccctaatttttgcaaaacttcaaaaactcccctgaaattgttaaacgttagtcaa 33136619  T
Q  135 ttatccccctccgtttgtttttgctgtta 163  Q
    ||| |||||||| | |||||| |||||||    
T  33136618 ttacccccctccatctgttttggctgtta 33136590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 128
Target Start/End: Complemental strand, 971351 - 971278
Alignment:
Q  53 tgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgtt 128  Q
    ||||||||||| |||||| |||||  ||||| |||||||||| ||||||||||| |  ||||||||||||||||||    
T  971351 tgaaattgtaattttcgtcaaaaa--accttgatttttaagagacttcaaaaaacctattgaaattgtcaaacgtt 971278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 27597477 - 27597421
Alignment:
Q  101 aaaaaatcctttgaaattgtcaaacgttagtcaattatccccctccgtttgtttttg 157  Q
    ||||||| || ||||||||||||| | ||||||||||  ||||||||||||||||||    
T  27597477 aaaaaattctctgaaattgtcaaatgctagtcaattactcccctccgtttgtttttg 27597421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 155
Target Start/End: Complemental strand, 21012464 - 21012421
Alignment:
Q  111 ttgaaattgtcaaacgttagtcaattatccccctccgtttgtttt 155  Q
    ||||||||||||||||||| ||||||| ||||||| |||||||||    
T  21012464 ttgaaattgtcaaacgttaatcaatta-ccccctctgtttgtttt 21012421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 35 - 171
Target Start/End: Original strand, 4592632 - 4592769
Alignment:
Q  35 aataggtaaaaactcccttgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaa 134  Q
    |||||| |||||| ||| |||||||||||||||||| ||||| | || | |||||||||| ||||||||||  ||  ||||||| |||||||||||||||    
T  4592632 aataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaacccccatgaaattatcaaacgttagtcaa 4592731  T
Q  135 ttatccccc-tccgtttgtttttgctgttaaatgacta 171  Q
    ||| ||||| |||||||||||| |||||||| ||||||    
T  4592732 ttaccccccttccgtttgttttggctgttaagtgacta 4592769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 85 - 170
Target Start/End: Complemental strand, 4593484 - 4593399
Alignment:
Q  85 atttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaattatccccctccgtttgtttttgctgttaaatgact 170  Q
    ||||||| || ||||||||||| ||  |||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  4593484 atttttaggaaacttcaaaaaaccccctgaaattgacaaacgtcagtcaattatccccctccgtttgttttggctgttaaatgact 4593399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 54 - 168
Target Start/End: Original strand, 33002900 - 33003013
Alignment:
Q  54 gaaattgtaactttcgtaaaaaat-caccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaattatccccctccgtttgt 152  Q
    ||||||||||||||| |||||||  | |||| |||||||||| |||||||||| ||  | ||||||||||||||||||| ||||| ||||||||||||||    
T  33002900 gaaattgtaactttcataaaaaaaaccccttgatttttaagaaacttcaaaaactcgat-gaaattgtcaaacgttagttaatta-ccccctccgtttgt 33002997  T
Q  153 ttttgctgttaaatga 168  Q
    ||| | ||||||||||    
T  33002998 tttggatgttaaatga 33003013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 49 - 170
Target Start/End: Complemental strand, 10256605 - 10256485
Alignment:
Q  49 cccttgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaattatccccctccgt 148  Q
    |||||||||||||| ||||||| ||||| | || | |||| || || ||||||||||  || | ||||||| ||||||||||||||||| ||| ||||||    
T  10256605 cccttgaaattgtagctttcgtcaaaaacccccctgatttctaggaaacttcaaaaaccccct-gaaattgccaaacgttagtcaattaccccgctccgt 10256507  T
Q  149 ttgtttttgctgttaaatgact 170  Q
    ||||||| ||| ||||||||||    
T  10256506 ttgttttggctattaaatgact 10256485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 54 - 147
Target Start/End: Complemental strand, 33003831 - 33003738
Alignment:
Q  54 gaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaattatccccctccg 147  Q
    |||||||||||||||||||||||   |  | |||||||||| |||| ||||| ||| |||||||||||||||||| |||||||| |||||||||    
T  33003831 gaaattgtaactttcgtaaaaaaaaccgctgatttttaagaaacttaaaaaattcccttgaaattgtcaaacgttggtcaattacccccctccg 33003738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 10255750 - 10255810
Alignment:
Q  111 ttgaaattgtcaaacgttagtcaattatccccctccgtttgtttttgctgttaaatgacta 171  Q
    |||||||| |||||||| ||||||||| ||||||||||||||||| |||||||||||||||    
T  10255750 ttgaaattatcaaacgtcagtcaattacccccctccgtttgttttggctgttaaatgacta 10255810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 166
Target Start/End: Complemental strand, 22539223 - 22539113
Alignment:
Q  53 tgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaattatccccctccgtttgt 152  Q
    |||||||||||||||||| || || | || | | |||||| | ||||||||||| ||  ||||||||||||||||||||||||||  ||||||||| |||    
T  22539223 tgaaattgtaactttcgtcaagaa-ccccctgacttttaaaaaacttcaaaaaaccccatgaaattgtcaaacgttagtcaatta--cccctccgtatgt 22539127  T
Q  153 ttttgctgttaaat 166  Q
    ||| ||||||||||    
T  22539126 tttggctgttaaat 22539113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 148
Target Start/End: Complemental strand, 4474719 - 4474626
Alignment:
Q  54 gaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaattatccccctccgt 148  Q
    ||||||| ||| ||||||||||||  ||| || |||||||| |||| ||    ||||||||||||||||||||||||||||||  ||||||||||    
T  4474719 gaaattgcaacgttcgtaaaaaattccct-aacttttaagaaactttaatttttcctttgaaattgtcaaacgttagtcaatttaccccctccgt 4474626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 32946714 - 32946763
Alignment:
Q  96 acttcaaaaaatcctttgaaattgtcaaacgttagtcaattatccccctc 145  Q
    ||||||||||| || ||||||||||||||||| |||||| || |||||||    
T  32946714 acttcaaaaaaccccttgaaattgtcaaacgtcagtcaaatacccccctc 32946763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 50 - 171
Target Start/End: Complemental strand, 33260 - 33138
Alignment:
Q  50 ccttgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctt-tgaaattgtcaaacgttagtcaattatccccctccgt 148  Q
    ||||||||||||| |||||||||||||   || | ||||||| || ||||| ||||| ||   |||||||||||||||||||||||||| ||||||||||    
T  33260 ccttgaaattgtagctttcgtaaaaaactcccctgatttttaggaaacttccaaaaacccccctgaaattgtcaaacgttagtcaattacccccctccgt 33161  T
Q  149 ttgtttttgctgttaaatgacta 171  Q
    ||||||| |||||||||||||||    
T  33160 ttgttttggctgttaaatgacta 33138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 35 - 171
Target Start/End: Original strand, 32356 - 32493
Alignment:
Q  35 aataggtaaaaactcccttgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttg-aaattgtcaaacgttagtca 133  Q
    |||||| |||||| | | |||||||||||||||||| ||||||| |  | |||||||||| ||||||||||  || | | ||||| ||||||||||||||    
T  32356 aataggcaaaaaccctcctgaaattgtaactttcgtcaaaaatccctctgatttttaagaaacttcaaaaaccccctcggaaattatcaaacgttagtca 32455  T
Q  134 attatccccctccgtttgtttttgctgttaaatgacta 171  Q
    || | ||| ||||||||||||| |||||||||||||||    
T  32456 ataacccctctccgtttgttttggctgttaaatgacta 32493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 42 - 169
Target Start/End: Original strand, 36475284 - 36475411
Alignment:
Q  42 aaaaactcccttgaaattgtaactttcgt-aaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaattatcc 140  Q
    ||||| ||||||||||||||||||||||| ||||||   || | |||||||||| ||||||||| |  |  ||||||||| |||||||||||||||| ||    
T  36475284 aaaaaatcccttgaaattgtaactttcgtcaaaaaacttccatgatttttaagaaacttcaaaagaaaccctgaaattgttaaacgttagtcaatta-cc 36475382  T
Q  141 ccctccgtttgtttttgctgttaaatgac 169  Q
    ||||||||||||||| |||||||||||||    
T  36475383 ccctccgtttgttttggctgttaaatgac 36475411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 35 - 171
Target Start/End: Complemental strand, 47445907 - 47445769
Alignment:
Q  35 aataggtaaaaactccct-tgaaattgtaactttcgtaaaaaatcacct-taatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtc 132  Q
    |||||| |||||| |||| ||||||||||| |||| | ||||||| ||  | |||||||||| ||||||||||| ||  ||||||| |||||||||||||    
T  47445907 aataggcaaaaaccccctctgaaattgtaattttcatcaaaaatcccccctgatttttaagaaacttcaaaaaaacccctgaaattatcaaacgttagtc 47445808  T
Q  133 aattatccccctccgtttgtttttgctgttaaatgacta 171  Q
    ||||| |||||||| |||||||| | |||||||||||||    
T  47445807 aattacccccctccatttgttttggttgttaaatgacta 47445769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 35 - 170
Target Start/End: Complemental strand, 36476101 - 36475966
Alignment:
Q  35 aataggtaaaaactcccttgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaa 134  Q
    |||||| |||||| | | |||||||||||||||||| ||||  |    ||| |||||||| ||||||||||  ||  ||||||||| |||||||||||||    
T  36476101 aataggcaaaaaccctcctgaaattgtaactttcgtcaaaaccctatctaacttttaagaaacttcaaaaacccccatgaaattgttaaacgttagtcaa 36476002  T
Q  135 ttatccccctccgtttgtttttgctgttaaatgact 170  Q
    ||| |||||||| |||||||| ||||||||||||||    
T  36476001 ttacccccctccatttgttttggctgttaaatgact 36475966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 53 - 170
Target Start/End: Original strand, 27585314 - 27585429
Alignment:
Q  53 tgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaattatccccctccgtttgt 152  Q
    |||||||||| ||||||| ||||||| ||  ||||||||||| ||||||||||  || | |||||||||||||||||||| |||| |||| | |||||||    
T  27585314 tgaaattgtacctttcgtcaaaaatccccc-aatttttaagaaacttcaaaaaccccct-gaaattgtcaaacgttagtcgattacccccattcgtttgt 27585411  T
Q  153 ttttgctgttaaatgact 170  Q
    ||| ||||||||||||||    
T  27585412 tttggctgttaaatgact 27585429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 53 - 168
Target Start/End: Original strand, 47445011 - 47445126
Alignment:
Q  53 tgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaattatccccctccgtttgt 152  Q
    |||||||||| ||||||| ||||  | || | ||||| | || ||||||||||  ||  |||||||||||||||||||||||||| |||||||||||| |    
T  47445011 tgaaattgtagctttcgtcaaaaccccccctgattttcaggaaacttcaaaaacccccatgaaattgtcaaacgttagtcaattacccccctccgtttat 47445110  T
Q  153 ttttgctgttaaatga 168  Q
    ||| ||||||||||||    
T  47445111 tttggctgttaaatga 47445126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 168
Target Start/End: Complemental strand, 27586099 - 27585983
Alignment:
Q  50 ccttgaaattgtaactttcgt-aaaaaatcaccttaatttttaagatacttcaaaaaa-tcctttgaaattgtcaaacgttagtcaattatccccctccg 147  Q
    ||||||||||||||||||||| |||||||| || || |||| |||| ||||||||||| ||||  |||||||| |||||||||||||||| ||||||||     
T  27586099 ccttgaaattgtaactttcgttaaaaaatccccatactttt-aagaaacttcaaaaaactcct--gaaattgttaaacgttagtcaatta-ccccctcca 27586004  T
Q  148 tttgtttttgctgttaaatga 168  Q
    |||||| | ||||||||||||    
T  27586003 tttgttatggctgttaaatga 27585983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 55 - 164
Target Start/End: Original strand, 5158677 - 5158785
Alignment:
Q  55 aaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaattatccccctccgtttgttt 154  Q
    |||||||| ||||||||||||||| ||   | |||||||| |||||| |||  ||||||||||||||||||||| ||||||| |||| ||||| ||||||    
T  5158677 aaattgtagctttcgtaaaaaatc-ccgcgacttttaagaaacttcacaaatccctttgaaattgtcaaacgttggtcaattttccctctccgattgttt 5158775  T
Q  155 ttgctgttaa 164  Q
    | | ||||||    
T  5158776 tggttgttaa 5158785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 140
Target Start/End: Original strand, 786755 - 786846
Alignment:
Q  50 ccttgaaattgtaactttcgtaaaaaa-tcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaattatcc 140  Q
    ||||||||| |||| |||| ||||||| || || | |||||||||| ||||||||||| ||  | ||||| |||||||||||||||||||||    
T  786755 ccttgaaatcgtaagtttcataaaaaaatccccctgatttttaagaaacttcaaaaaaccccataaaattatcaaacgttagtcaattatcc 786846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 154
Target Start/End: Original strand, 45575952 - 45576051
Alignment:
Q  53 tgaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatcctttgaaattgtcaaacgttagtcaattatccccctccgtttgt 152  Q
    |||||||| || |||||| ||||| | || | |||||||| | |||||||||  |||  | |||||||||||||||||||||||| ||||||||||||||    
T  45575952 tgaaattgaaagtttcgtcaaaaacccccatgatttttaaaaaacttcaaaac-tcccataaaattgtcaaacgttagtcaatta-ccccctccgtttgt 45576049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 137
Target Start/End: Complemental strand, 45577376 - 45577293
Alignment:
Q  54 gaaattgtaactttcgtaaaaaatcaccttaatttttaagatacttcaaaaaatc-ctttgaaattgtcaaacgttagtcaatta 137  Q
    ||||||| || ||||||||||||  |||| ||||||||||| |||| ||||||   | |||||||||||||||||||||||||||    
T  45577376 gaaattggaagtttcgtaaaaaaaaacct-aatttttaagaaacttaaaaaaaaaaccttgaaattgtcaaacgttagtcaatta 45577293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 165
Target Start/End: Complemental strand, 788011 - 787949
Alignment:
Q  102 aaaaatcctttgaaattgtcaaacgttagtcaattatccccctccgtttgtttttgctgttaaa 165  Q
    |||||||| |||||||| |||| ||||||||||||| |||||||| |||||||  |||||||||    
T  788011 aaaaatcccttgaaattttcaaccgttagtcaatta-ccccctccatttgtttgggctgttaaa 787949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 165
Target Start/End: Complemental strand, 27453 - 27403
Alignment:
Q  114 aaattgtcaaacgttagtcaattatccccctccgtttgtttttgctgttaaa 165  Q
    ||||||||||||| |||||||||| ||||||||||||||||| |||||||||    
T  27453 aaattgtcaaacgatagtcaatta-ccccctccgtttgttttggctgttaaa 27403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 163
Target Start/End: Original strand, 2029 - 2080
Alignment:
Q  112 tgaaattgtcaaacgttagtcaattatccccctccgtttgtttttgctgtta 163  Q
    ||||||||| |||||||||||||||| |||||||||| |||||| |||||||    
T  2029 tgaaattgttaaacgttagtcaattacccccctccgtctgttttggctgtta 2080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University