View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_289 (Length: 223)
Name: NF8905A_low_289
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_289 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 28250030 - 28249817
Alignment:
| Q |
1 |
gaaaaagacacagcggttttcacaccgtgtgaactcaaacaatcattctccgtccctatgctgcgtgtggcgaaaaccgtcgatatgtacctcgctgaaa |
100 |
Q |
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|||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28250030 |
gaaaaaaacacagcggttttcacaccgggagaactcaaacaatcattctccgtccctatgctgcgtgtggcgaaaaccgtcgacatgtacctcgctgaaa |
28249931 |
T |
|
| Q |
101 |
tcgccgcgtacggtgaactcagcatctcaaaattcaacggaatcgctgttcttattcctaaacacgcgcgtaaaatcgacgatgatctttaccgcgccgt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28249930 |
tcgccgcgtacggtgaactcagcatctcaaaattcaacggaatcgctgttcttattcctaaacacgcgcgtaaaatcgacgatgatctttaccgcgccgt |
28249831 |
T |
|
| Q |
201 |
tgatgtccatctca |
214 |
Q |
| |
|
|||| || |||||| |
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| T |
28249830 |
tgatatctatctca |
28249817 |
T |
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