View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_29 (Length: 394)
Name: NF8905A_low_29
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 11 - 390
Target Start/End: Complemental strand, 36269067 - 36268687
Alignment:
| Q |
11 |
tgttggaggatacaatgagtttatggtataaggtgttatgtgagtgttacatgcaggaaaggggggaagttgtgtgtagggaggggaggtgggtcagtgc |
110 |
Q |
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| T |
36269067 |
tgttggaggatacagtgagtttatggtataaggtgttatgtgagtgttacatgcaggaaagggggaaagttgtgtgtagggaggggaggtgggtcagtgt |
36268968 |
T |
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| Q |
111 |
gttggcagactgtgaataatattagagagggggttgggctaatagattgaggtcgactgcttgataatatttgtcggaaggttggggatgagtcttctac |
210 |
Q |
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| T |
36268967 |
gttggcatactgtgaataatattagagagggtgttgcgctagtagattgaggtcgactgcttgataatatttgtcggaaggttggtgatgagtcttctac |
36268868 |
T |
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| Q |
211 |
tctgttttggaatgatccttggttggatggtagatctttgaaagatagttttagaagtttgtttgagttagctgataacaaattggcaacagtcgcggag |
310 |
Q |
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| T |
36268867 |
tttgttttgaaatgatccttggttggatcgtagatctttgaaagatagttttagaagtttgtttcagttagctgataacaaattggcaacggtcgcggaa |
36268768 |
T |
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| Q |
311 |
atgttttctttgggttggggagtgaatgacgaggcct-gaagtagcgtatgaggttgcttgaaagtagcagtcaataatca |
390 |
Q |
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| T |
36268767 |
atgttttctttgggttggggagtgaatgacgaggcttaaaagtagcgtatgaggttgcttgaaagtagcaatcaataatca |
36268687 |
T |
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