View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_291 (Length: 222)
Name: NF8905A_low_291
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_291 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 53761408 - 53761220
Alignment:
| Q |
17 |
agcagagacaaatttacaacatgttgattgttcagaaaataagcattttgaaggacaagacttgtcaaaggaagacattcctttgcaatagagtagagca |
116 |
Q |
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| T |
53761408 |
agcaaagacaaatttacaacatgttgattgttcagaaaataagcattttgaaggacaagacttgtcaaaggaagacattcctttgcaatagagtagagca |
53761309 |
T |
|
| Q |
117 |
acgtacttatctgaaattcctaaatgctgcaaattaagacaagtcaaacccttcaaactcaccaacgacttaataaaatctgaagtgatgtcc |
209 |
Q |
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| T |
53761308 |
----acttatctgaaattcctaaatgctgcaaattaagagaagtcaaacccttcaaactcaccaacgacttaataaaatctgaagtgatgtcc |
53761220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 152 - 181
Target Start/End: Original strand, 1601089 - 1601118
Alignment:
| Q |
152 |
aagacaagtcaaacccttcaaactcaccaa |
181 |
Q |
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| T |
1601089 |
aagacaagtcaaacccttcaaactcaccaa |
1601118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 178
Target Start/End: Complemental strand, 21833805 - 21833772
Alignment:
| Q |
145 |
gcaaattaagacaagtcaaacccttcaaactcac |
178 |
Q |
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| T |
21833805 |
gcaaactaagacaagtcaaacccttcaaactcac |
21833772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 21833880 - 21833832
Alignment:
| Q |
66 |
gaaggacaagacttgtcaaaggaagacattcctttgcaatagagtagag |
114 |
Q |
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| T |
21833880 |
gaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagag |
21833832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 63 - 195
Target Start/End: Complemental strand, 51763945 - 51763817
Alignment:
| Q |
63 |
tttgaaggacaagacttgtcaaaggaagacattcctttgcaatagagtagagcaacgtacttatctgaaattcctaaatgctgcaaattaagacaagtca |
162 |
Q |
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| T |
51763945 |
tttgaaggacaagccttttcaaaagaagaccttcccttgcaatcgagtagagcaac----tcatcagagattttcaaacgcttcaaatcaagagaagtca |
51763850 |
T |
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| Q |
163 |
aacccttcaaactcaccaacgacttaataaaat |
195 |
Q |
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| T |
51763849 |
aacccttcaaactcaccaacgaatcaataaaat |
51763817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 10615266 - 10615325
Alignment:
| Q |
143 |
ctgcaaattaagacaagtcaaacccttcaaactcaccaacgacttaataaaatctgaagt |
202 |
Q |
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|||||||| |||||||||||| ||||||||||||||||| || | |||||||| |||||| |
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| T |
10615266 |
ctgcaaatcaagacaagtcaagcccttcaaactcaccaatgagtcaataaaatgtgaagt |
10615325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 202
Target Start/End: Complemental strand, 10169550 - 10169500
Alignment:
| Q |
152 |
aagacaagtcaaacccttcaaactcaccaacgacttaataaaatctgaagt |
202 |
Q |
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|||| |||||||||||||||||||||||| ||| | ||||||||||||||| |
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| T |
10169550 |
aagagaagtcaaacccttcaaactcaccagcgagtcaataaaatctgaagt |
10169500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 202
Target Start/End: Complemental strand, 10177075 - 10177025
Alignment:
| Q |
152 |
aagacaagtcaaacccttcaaactcaccaacgacttaataaaatctgaagt |
202 |
Q |
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|||| |||||||||||||||||||||||| ||| | ||||||||||||||| |
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| T |
10177075 |
aagagaagtcaaacccttcaaactcaccagcgagtcaataaaatctgaagt |
10177025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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