View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8905A_low_293 (Length: 221)
Name: NF8905A_low_293
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_293 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 28 - 200
Target Start/End: Complemental strand, 29664248 - 29664078
Alignment:
| Q |
28 |
tttaaatctatcaataatcagaccagtgttgagacatattttggtgatgaggtgaagaagggagtgtaggagtgtgacagttacaaaaaccccaaaccag |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29664248 |
tttaaatctatcaataatcagaccagtgttgagacat--tttggtgatgaggtgaagaagggagtgtaggagtgtgacagttacaaaaaccccaaaccag |
29664151 |
T |
|
| Q |
128 |
atggtattaattttagttttcttaaacactagttaaaaatcaaagttgattttatgagatttctaattgacat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29664150 |
atggtattaattttagttttcttaaacactagttaaaaatcaaagttgattttatgagatttctaattgacat |
29664078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University