View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8905A_low_295 (Length: 220)

Name: NF8905A_low_295
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8905A_low_295
NF8905A_low_295
[»] chr5 (30 HSPs)
chr5 (72-198)||(29745561-29745686)
chr5 (72-161)||(19799308-19799397)
chr5 (72-195)||(40009937-40010060)
chr5 (72-197)||(20991368-20991492)
chr5 (72-164)||(22502026-22502118)
chr5 (72-164)||(22508607-22508699)
chr5 (72-166)||(33537140-33537233)
chr5 (84-168)||(19363672-19363755)
chr5 (72-166)||(5337321-5337416)
chr5 (72-197)||(19077592-19077715)
chr5 (84-172)||(23543845-23543934)
chr5 (72-195)||(24009074-24009196)
chr5 (72-166)||(22380579-22380674)
chr5 (72-196)||(26651462-26651583)
chr5 (72-196)||(26923047-26923168)
chr5 (72-168)||(28258896-28258991)
chr5 (72-168)||(42241919-42242015)
chr5 (72-122)||(16774018-16774068)
chr5 (156-195)||(23528787-23528826)
chr5 (72-134)||(18567672-18567734)
chr5 (72-168)||(37575533-37575629)
chr5 (71-168)||(17937847-17937945)
chr5 (72-168)||(31251691-31251787)
chr5 (72-127)||(7772637-7772691)
chr5 (72-127)||(18893963-18894017)
chr5 (72-131)||(18940179-18940238)
chr5 (156-195)||(22751285-22751324)
chr5 (128-197)||(27634879-27634945)
chr5 (72-128)||(20341623-20341679)
chr5 (72-128)||(20348227-20348283)
[»] chr6 (22 HSPs)
chr6 (72-161)||(17881758-17881847)
chr6 (72-191)||(19095744-19095862)
chr6 (72-166)||(10463176-10463271)
chr6 (72-196)||(8068651-8068774)
chr6 (72-171)||(29160098-29160197)
chr6 (102-191)||(16222646-16222733)
chr6 (72-168)||(17206701-17206797)
chr6 (72-148)||(23020322-23020399)
chr6 (72-172)||(33876045-33876145)
chr6 (72-165)||(29926794-29926887)
chr6 (102-191)||(25314633-25314719)
chr6 (102-191)||(26202127-26202213)
chr6 (72-128)||(27768496-27768552)
chr6 (72-166)||(93475-93569)
chr6 (72-128)||(4107726-4107781)
chr6 (72-162)||(13941533-13941624)
chr6 (72-131)||(26417608-26417667)
chr6 (72-125)||(12446155-12446209)
chr6 (72-197)||(28709697-28709820)
chr6 (72-168)||(34132920-34133018)
chr6 (72-144)||(11583500-11583572)
chr6 (71-131)||(23233917-23233977)
[»] chr4 (36 HSPs)
chr4 (72-196)||(13479950-13480072)
chr4 (72-161)||(47870014-47870104)
chr4 (72-166)||(54825116-54825209)
chr4 (72-166)||(34773260-34773353)
chr4 (102-191)||(44656739-44656826)
chr4 (102-191)||(44662660-44662747)
chr4 (72-191)||(41271452-41271570)
chr4 (72-168)||(52501594-52501690)
chr4 (20-70)||(5173080-5173130)
chr4 (20-67)||(4842395-4842442)
chr4 (72-166)||(20890416-20890511)
chr4 (21-70)||(5160164-5160213)
chr4 (72-168)||(33098140-33098235)
chr4 (72-168)||(37837582-37837678)
chr4 (72-168)||(900640-900735)
chr4 (15-67)||(5182412-5182464)
chr4 (18-70)||(5213969-5214021)
chr4 (72-127)||(2947540-2947595)
chr4 (15-66)||(4856867-4856918)
chr4 (72-166)||(20896043-20896138)
chr4 (72-128)||(11201203-11201259)
chr4 (72-128)||(35461339-35461395)
chr4 (23-66)||(5195810-5195853)
chr4 (83-168)||(42596287-42596372)
chr4 (72-169)||(45141483-45141579)
chr4 (72-128)||(37622247-37622302)
chr4 (72-128)||(42221518-42221574)
chr4 (73-169)||(5939974-5940072)
chr4 (72-134)||(13629912-13629974)
chr4 (72-105)||(11207944-11207977)
chr4 (72-128)||(46042372-46042429)
chr4 (114-166)||(19127325-19127376)
chr4 (72-106)||(23434918-23434952)
chr4 (72-197)||(30240138-30240263)
chr4 (84-128)||(30397230-30397274)
chr4 (117-161)||(42955032-42955076)
[»] chr2 (14 HSPs)
chr2 (72-161)||(35243500-35243589)
chr2 (72-168)||(25589594-25589689)
chr2 (72-191)||(2384861-2384979)
chr2 (72-191)||(27038319-27038437)
chr2 (72-197)||(28970214-28970337)
chr2 (117-198)||(27273219-27273298)
chr2 (72-165)||(15642237-15642330)
chr2 (72-166)||(36801654-36801748)
chr2 (100-197)||(32910455-32910550)
chr2 (72-128)||(35191-35246)
chr2 (72-166)||(11467120-11467214)
chr2 (117-191)||(24425827-24425898)
chr2 (72-134)||(27730623-27730684)
chr2 (72-128)||(11359181-11359237)
[»] scaffold0093 (3 HSPs)
scaffold0093 (71-198)||(25716-25841)
scaffold0093 (71-198)||(36384-36509)
scaffold0093 (72-198)||(42792-42916)
[»] chr1 (23 HSPs)
chr1 (72-198)||(42627266-42627392)
chr1 (72-195)||(12203672-12203795)
chr1 (72-195)||(38906974-38907097)
chr1 (72-131)||(47485242-47485301)
chr1 (72-195)||(21921864-21921983)
chr1 (84-168)||(43089477-43089561)
chr1 (102-191)||(6741593-6741680)
chr1 (72-168)||(36616026-36616122)
chr1 (72-166)||(49329129-49329224)
chr1 (117-198)||(4232257-4232336)
chr1 (72-197)||(11946570-11946693)
chr1 (72-168)||(18419222-18419317)
chr1 (72-168)||(29601219-29601313)
chr1 (72-128)||(17150454-17150509)
chr1 (72-140)||(24237354-24237421)
chr1 (72-166)||(36918218-36918311)
chr1 (73-166)||(21964107-21964200)
chr1 (72-197)||(31926250-31926375)
chr1 (72-131)||(19045218-19045277)
chr1 (72-165)||(24425137-24425231)
chr1 (72-134)||(41052876-41052937)
chr1 (72-128)||(20571878-20571934)
chr1 (72-128)||(21245400-21245456)
[»] chr3 (29 HSPs)
chr3 (75-168)||(15375724-15375818)
chr3 (72-166)||(16330591-16330685)
chr3 (72-172)||(891503-891603)
chr3 (72-195)||(21353240-21353362)
chr3 (72-168)||(29551992-29552087)
chr3 (72-168)||(9690446-9690541)
chr3 (72-131)||(18962079-18962139)
chr3 (72-197)||(45219201-45219323)
chr3 (72-168)||(20376221-20376316)
chr3 (72-168)||(30595834-30595930)
chr3 (72-168)||(46070089-46070184)
chr3 (72-128)||(9770893-9770948)
chr3 (72-166)||(32386993-32387088)
chr3 (72-196)||(12724106-12724227)
chr3 (98-159)||(19343257-19343317)
chr3 (72-128)||(48773590-48773646)
chr3 (72-140)||(54090711-54090778)
chr3 (72-166)||(16834313-16834406)
chr3 (72-131)||(27033823-27033882)
chr3 (75-128)||(11963161-11963214)
chr3 (72-197)||(12275374-12275499)
chr3 (117-166)||(53871668-53871717)
chr3 (72-128)||(3552628-3552684)
chr3 (72-128)||(12270281-12270337)
chr3 (72-122)||(10596637-10596687)
chr3 (72-134)||(21150459-21150520)
chr3 (72-128)||(6926592-6926647)
chr3 (72-128)||(23825780-23825836)
chr3 (72-144)||(43723054-43723126)
[»] chr8 (33 HSPs)
chr8 (72-164)||(27346763-27346855)
chr8 (72-164)||(27364398-27364490)
chr8 (72-198)||(6589137-6589263)
chr8 (72-195)||(16886233-16886356)
chr8 (72-166)||(19297618-19297711)
chr8 (72-195)||(14735755-14735878)
chr8 (72-168)||(35542094-35542190)
chr8 (72-166)||(29329296-29329389)
chr8 (72-197)||(44474501-44474624)
chr8 (72-161)||(3223606-3223693)
chr8 (72-140)||(11391543-11391610)
chr8 (72-131)||(43688523-43688581)
chr8 (76-166)||(27890981-27891069)
chr8 (72-166)||(27897314-27897406)
chr8 (76-166)||(27903220-27903308)
chr8 (76-166)||(27949639-27949727)
chr8 (72-167)||(29298012-29298106)
chr8 (72-167)||(29304567-29304661)
chr8 (72-166)||(12304293-12304388)
chr8 (72-128)||(23118317-23118372)
chr8 (72-128)||(25700550-25700606)
chr8 (72-134)||(6603166-6603229)
chr8 (72-134)||(6609993-6610056)
chr8 (72-134)||(6678619-6678682)
chr8 (75-128)||(10947543-10947595)
chr8 (75-128)||(10955625-10955677)
chr8 (72-168)||(16265803-16265899)
chr8 (72-168)||(4519666-4519763)
chr8 (72-128)||(26484953-26485009)
chr8 (72-131)||(31417628-31417687)
chr8 (72-191)||(21931835-21931951)
chr8 (72-128)||(3698872-3698928)
chr8 (72-166)||(14745453-14745548)
[»] scaffold0022 (1 HSPs)
scaffold0022 (72-169)||(105388-105485)
[»] scaffold0113 (2 HSPs)
scaffold0113 (72-168)||(16212-16309)
scaffold0113 (72-168)||(20310-20407)
[»] chr7 (23 HSPs)
chr7 (72-166)||(12462615-12462710)
chr7 (72-166)||(12455159-12455254)
chr7 (72-166)||(21758392-21758485)
chr7 (102-191)||(25159509-25159596)
chr7 (72-168)||(23522079-23522174)
chr7 (72-166)||(19463774-19463869)
chr7 (72-191)||(32628483-32628600)
chr7 (72-168)||(20018649-20018747)
chr7 (72-128)||(30270762-30270818)
chr7 (72-168)||(15839701-15839797)
chr7 (72-128)||(13962981-13963036)
chr7 (72-128)||(37288603-37288659)
chr7 (72-122)||(3328975-3329025)
chr7 (72-168)||(16842849-16842944)
chr7 (117-166)||(46175420-46175469)
chr7 (72-128)||(15632498-15632553)
chr7 (72-128)||(27566097-27566153)
chr7 (72-168)||(42059651-42059748)
chr7 (72-107)||(26288736-26288771)
chr7 (72-131)||(37243241-37243300)
chr7 (72-169)||(49159864-49159963)
chr7 (72-106)||(2025199-2025233)
chr7 (72-197)||(11390832-11390955)
[»] scaffold0103 (2 HSPs)
scaffold0103 (72-167)||(20687-20782)
scaffold0103 (72-167)||(22802-22897)
[»] scaffold0037 (1 HSPs)
scaffold0037 (76-166)||(100634-100726)
[»] scaffold0320 (1 HSPs)
scaffold0320 (72-168)||(1993-2088)
[»] scaffold0001 (1 HSPs)
scaffold0001 (72-168)||(180087-180182)
[»] scaffold0155 (1 HSPs)
scaffold0155 (72-131)||(31959-32018)
[»] scaffold0003 (1 HSPs)
scaffold0003 (72-166)||(160464-160556)
[»] scaffold0089 (1 HSPs)
scaffold0089 (102-191)||(17522-17609)
[»] scaffold1128 (1 HSPs)
scaffold1128 (72-197)||(627-750)
[»] scaffold0815 (1 HSPs)
scaffold0815 (72-197)||(1582-1705)
[»] scaffold0191 (1 HSPs)
scaffold0191 (72-128)||(10891-10947)
[»] scaffold0009 (2 HSPs)
scaffold0009 (72-131)||(248145-248205)
scaffold0009 (72-131)||(254657-254717)
[»] scaffold0310 (1 HSPs)
scaffold0310 (72-168)||(17168-17263)
[»] scaffold0007 (1 HSPs)
scaffold0007 (72-195)||(206672-206794)
[»] scaffold0190 (1 HSPs)
scaffold0190 (72-166)||(19088-19183)
[»] scaffold0068 (2 HSPs)
scaffold0068 (72-128)||(50821-50877)
scaffold0068 (72-128)||(64269-64325)
[»] scaffold0214 (1 HSPs)
scaffold0214 (72-166)||(14187-14281)
[»] scaffold0149 (1 HSPs)
scaffold0149 (109-195)||(13943-14028)
[»] scaffold0457 (1 HSPs)
scaffold0457 (72-134)||(11192-11254)
[»] scaffold0118 (1 HSPs)
scaffold0118 (72-134)||(8297-8359)
[»] scaffold0583 (1 HSPs)
scaffold0583 (72-131)||(657-716)
[»] scaffold0516 (1 HSPs)
scaffold0516 (72-197)||(7254-7377)
[»] scaffold0031 (2 HSPs)
scaffold0031 (109-195)||(122039-122125)
scaffold0031 (109-195)||(132915-133001)
[»] scaffold0034 (1 HSPs)
scaffold0034 (72-122)||(14619-14669)
[»] scaffold0050 (1 HSPs)
scaffold0050 (72-197)||(13922-14047)
[»] scaffold0019 (1 HSPs)
scaffold0019 (84-168)||(138173-138256)
[»] scaffold0004 (1 HSPs)
scaffold0004 (156-197)||(117037-117078)
[»] scaffold0137 (1 HSPs)
scaffold0137 (72-128)||(25270-25326)
[»] scaffold0102 (1 HSPs)
scaffold0102 (72-131)||(11261-11321)
[»] scaffold0060 (1 HSPs)
scaffold0060 (84-131)||(42315-42362)
[»] scaffold0053 (1 HSPs)
scaffold0053 (151-195)||(78960-79003)


Alignment Details
Target: chr5 (Bit Score: 89; Significance: 5e-43; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 72 - 198
Target Start/End: Original strand, 29745561 - 29745686
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaata-aagggggttaagtaaatgggaagttaggaaaagaaa 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||| |||||||||||  ||| | |    
T  29745561 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaaatgaaaatagaagggagttaagtaagtgggaagttag--aaaaata 29745658  T
Q  171 gaatcagaagcagttttacgtgaaaacc 198  Q
    ||||||||||||||||||||||||||||    
T  29745659 gaatcagaagcagttttacgtgaaaacc 29745686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 72 - 161
Target Start/End: Original strand, 19799308 - 19799397
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttag 161  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  19799308 ttattttggtgtttggggagttaatagaatttattattattaatggggagttaagtgaaaataaagggagttaagtaaataggaagttag 19799397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 72 - 195
Target Start/End: Original strand, 40009937 - 40010060
Alignment:
Q  72 ttattttggtgtttggggagttaataga-atttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaaa 170  Q
    ||||||||| ||||||||||||| |  | |||||||||| |||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||    
T  40009937 ttattttggagtttggggagttatttaatatttattaaagttaatggggagttaagtgaaaatatagggagttaagtaa-tgggaagttaggaaaagaaa 40010035  T
Q  171 gaatcagaagcagttttacgtgaaa 195  Q
    ||||||||| | |||||||||||||    
T  40010036 gaatcagaaactgttttacgtgaaa 40010060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 72 - 197
Target Start/End: Complemental strand, 20991492 - 20991368
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggg-gttaagtaaatgggaagttaggaaaagaaa 170  Q
    ||||||||||||||||||||||||| ||| ||||||||||| |||||||||||| ||||||||| |||| |||||||||||||||||||||||||| | |    
T  20991492 ttattttggtgtttggggagttaattgaagttattaaaatttatggggagttaaatgaaaataagggggagttaagtaaatgggaagttaggaaaa-ata 20991394  T
Q  171 gaatcagaagcagttttacgtgaaaac 197  Q
    || ||||||| | ||||||||||||||    
T  20991393 gagtcagaag-aattttacgtgaaaac 20991368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 72 - 164
Target Start/End: Complemental strand, 22502118 - 22502026
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaa 164  Q
    |||||||| ||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||| |||||||||  |||||||||||||    
T  22502118 ttattttgatgtttggggagttaataaaattgattagaattaatggggagttaagtgaaaataaagggagttaagtaagagggaagttaggaa 22502026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 72 - 164
Target Start/End: Complemental strand, 22508699 - 22508607
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaa 164  Q
    |||||||| ||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||| |||||||||  |||||||||||||    
T  22508699 ttattttgatgtttggggagttaataaaattgattagaattaatggggagttaagtgaaaataaagggagttaagtaagagggaagttaggaa 22508607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 72 - 166
Target Start/End: Complemental strand, 33537233 - 33537140
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaa 166  Q
    |||||||||||||||||||||||||| |||||| |||||||||  ||||||||| ||||||||||||| |||||||||  |||||||||||||||    
T  33537233 ttattttggtgtttggggagttaatataatttaataaaattaa-agggagttaaatgaaaataaagggagttaagtaagagggaagttaggaaaa 33537140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 84 - 168
Target Start/End: Complemental strand, 19363755 - 19363672
Alignment:
Q  84 ttggggagttaat-agaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaaga 168  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||| |||||||||| ||| |||||||||||||    
T  19363755 ttggggagttaattagaatttattagaattaatggggagttaagtg-aaataaagggagttaagtaaa-ggggagttaggaaaaga 19363672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 72 - 166
Target Start/End: Original strand, 5337321 - 5337416
Alignment:
Q  72 ttattttggtgtttggggagttaataga-atttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaa 166  Q
    ||||||||| ||||| |||||||||  | ||||| || |||||| |||||||||| ||||||||| ||| ||||||||||||||||||||||||||    
T  5337321 ttattttggagtttgaggagttaattaatatttaatagaattaagggggagttaaatgaaaataaggggagttaagtaaatgggaagttaggaaaa 5337416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 72 - 197
Target Start/End: Complemental strand, 19077715 - 19077592
Alignment:
Q  72 ttattttggtgtttggggagttaat-agaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaaa 170  Q
    ||||||||| ||||||||| ||||| || ||||| || |||||| | |||||||| ||||||||| ||| ||||||||| |||||||||||||||||| |    
T  19077715 ttattttggagtttggggaattaattaggatttaatagaattaaggtggagttaaatgaaaataaggggagttaagtaa-tgggaagttaggaaaagaga 19077617  T
Q  171 gaatcagaagcagttttacgtgaaaac 197  Q
     | |||||||||| |||||||||||||    
T  19077616 -agtcagaagcag-tttacgtgaaaac 19077592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 84 - 172
Target Start/End: Original strand, 23543845 - 23543934
Alignment:
Q  84 ttggggagttaat-agaatttattaaaattaatggggagttaagtgaaaataaagggggttaag-taaatgggaagttaggaaaagaaaga 172  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||| |||   || |||||||||||||||||    
T  23543845 ttggggagttaattagaatttattaaaattaatggggagttaagtg-aaataaagggagttaagttaagaagggagttaggaaaagaaaga 23543934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 195
Target Start/End: Complemental strand, 24009196 - 24009074
Alignment:
Q  72 ttattttggtgtttggggagttaataga-atttattaaaattaatggggagttaagtgaaaataa-agggggttaagtaaatgggaagttaggaaaagaa 169  Q
    ||||||||| ||||||||||||| |  | | |||||||||||| ||||||| ||| || |||||  |||| ||||||||| |||||||||| ||||||||    
T  24009196 ttattttggagtttggggagttatttaataattattaaaatta-tggggagctaa-tggaaatattagggagttaagtaa-tgggaagttaagaaaagaa 24009100  T
Q  170 agaatcagaagcagttttacgtgaaa 195  Q
    ||||||||||||||||||||||||||    
T  24009099 agaatcagaagcagttttacgtgaaa 24009074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 72 - 166
Target Start/End: Complemental strand, 22380674 - 22380579
Alignment:
Q  72 ttattttggtgtttggggagttaataga-atttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaa 166  Q
    ||||||||| |||||||||||||||  | ||||| |  |||||| |||||||||  ||||||||| ||| ||||||||||||||||||||||||||    
T  22380674 ttattttggagtttggggagttaattaatatttaatggaattaagggggagttatatgaaaataaggggagttaagtaaatgggaagttaggaaaa 22380579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 72 - 196
Target Start/End: Complemental strand, 26651583 - 26651462
Alignment:
Q  72 ttattttggtgtttggggagtta-atagaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaaa 170  Q
    ||||||||| |||||||||||||  ||  ||||| || ||||||  ||||||||| ||||||||||||| ||||||| |||||||||||||||||||| |    
T  26651583 ttattttggagtttggggagttatttaatatttaatagaattaa-agggagttaaatgaaaataaagggagttaagt-aatgggaagttaggaaaagaga 26651486  T
Q  171 gaatcagaagcagttttacgtgaaaa 196  Q
     | |||||||||| ||||||||||||    
T  26651485 -agtcagaagcag-tttacgtgaaaa 26651462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 72 - 196
Target Start/End: Complemental strand, 26923168 - 26923047
Alignment:
Q  72 ttattttggtgtttggggagtta-atagaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaaa 170  Q
    ||||||||| |||||||||||||  ||  ||||| || ||||||  ||||||||| ||||||||||||| ||||||| |||||||||||||||||||| |    
T  26923168 ttattttggagtttggggagttatttaatatttaatagaattaa-agggagttaaatgaaaataaagggagttaagt-aatgggaagttaggaaaagaga 26923071  T
Q  171 gaatcagaagcagttttacgtgaaaa 196  Q
     | |||||||||| ||||||||||||    
T  26923070 -agtcagaagcag-tttacgtgaaaa 26923047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 72 - 168
Target Start/End: Original strand, 28258896 - 28258991
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggg-gttaagtaaatgggaagttaggaaaaga 168  Q
    |||||||||||||||||||  |||||||| |||||| |||| |||||||||||||||| ||| ||||||  |||||| ||| ||||||||||||||||    
T  28258896 ttattttggtgtttggggaaataatagaagttattagaatt-atggggagttaagtgataattaaggggaattaagt-aataggaagttaggaaaaga 28258991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 72 - 168
Target Start/End: Original strand, 42241919 - 42242015
Alignment:
Q  72 ttattttggtgtttggggagttaat-agaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaaga 168  Q
    ||||||||| ||||||||| ||||| || ||||| || |||||| |||||||||| |||||| || ||| ||||||||| ||||||||||||||||||    
T  42241919 ttattttggagtttggggaattaattaggatttaatagaattaagggggagttaaatgaaaagaaggggagttaagtaa-tgggaagttaggaaaaga 42242015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 16774018 - 16774068
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagt 122  Q
    ||||||||||||||||||||||||||||||||| || |||| |||||||||    
T  16774018 ttattttggtgtttggggagttaatagaatttaatagaatttatggggagt 16774068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 195
Target Start/End: Complemental strand, 23528826 - 23528787
Alignment:
Q  156 agttaggaaaagaaagaatcagaagcagttttacgtgaaa 195  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  23528826 agttaggaaaagaaagagtcagaagcagttttacgtgaaa 23528787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 18567734 - 18567672
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaata 134  Q
    ||||||||||||||||||| ||||||| | ||| || || | |||||||||||||||||||||    
T  18567734 ttattttggtgtttggggaattaataggagttaatagaaattatggggagttaagtgaaaata 18567672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 168
Target Start/End: Complemental strand, 37575629 - 37575533
Alignment:
Q  72 ttattttggtgtttggggagtta-atagaatttattaaaattaatggggagttaagtgaaaataaagggg-gttaagtaaatgggaagttaggaaaaga 168  Q
    ||||||||| |||||||||||||  ||  ||||| || ||||||  ||||||||| |||||||||||||| ||||||| ||||||||||||||||||||    
T  37575629 ttattttggagtttggggagttatttaatatttaatagaattaa-agggagttaaatgaaaataaaggggagttaagt-aatgggaagttaggaaaaga 37575533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 168
Target Start/End: Original strand, 17937847 - 17937945
Alignment:
Q  71 tttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaata-aagggggtt--aagtaaatgggaagttaggaaaag 167  Q
    ||||||||||||||||||||  |||||| | |||||| || | |||||||||||| |||||||| ||||| |||  |||| |||||||||||||||||||    
T  17937847 tttattttggtgtttggggaaataataggagttattagaagttatggggagttaa-tgaaaatagaagggagttacaagt-aatgggaagttaggaaaag 17937944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 168
Target Start/End: Original strand, 31251691 - 31251787
Alignment:
Q  72 ttattttggtgtttggggagttaat-agaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaaga 168  Q
    |||||||||  ||||| || ||||| || ||||| || |||||| |||||||||| ||||||||| | | ||||||||| ||||||||||||||||||    
T  31251691 ttattttggattttggagaattaattaggatttaatagaattaagggggagttaaatgaaaataaggagagttaagtaa-tgggaagttaggaaaaga 31251787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 127
Target Start/End: Original strand, 7772637 - 7772691
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagt 127  Q
    |||||||||||||||||||  |||||||| |||||| |||| ||||||||||||||    
T  7772637 ttattttggtgtttggggaaataatagaaattattagaatt-atggggagttaagt 7772691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 127
Target Start/End: Original strand, 18893963 - 18894017
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagt 127  Q
    ||||||||||||||||||| |||||||||||||||  ||||||  |||||||||||    
T  18893963 ttattttggtgtttggggaattaatagaatttattggaattaa-agggagttaagt 18894017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 18940179 - 18940238
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaa 131  Q
    ||||||||| |||||||||||||||||||||||||  |||||   |||||| ||||||||    
T  18940179 ttattttggagtttggggagttaatagaatttatttgaattaggagggagtaaagtgaaa 18940238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 195
Target Start/End: Complemental strand, 22751324 - 22751285
Alignment:
Q  156 agttaggaaaagaaagaatcagaagcagttttacgtgaaa 195  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  22751324 agttaggaaaagaaaaagtcagaagcagttttacgtgaaa 22751285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 197
Target Start/End: Original strand, 27634879 - 27634945
Alignment:
Q  128 gaaaataaagggggttaagtaaatgggaagttaggaaaagaaagaatcagaagcagttttacgtgaaaac 197  Q
    |||||||| ||| ||||||||| |||||||||||||||||| | | |||||||||| |||||||||||||    
T  27634879 gaaaataaggggagttaagtaa-tgggaagttaggaaaagaga-agtcagaagcag-tttacgtgaaaac 27634945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 20341679 - 20341623
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtg 128  Q
    ||||||||||||||||||| ||||||| | ||| || || | |||||||||||||||    
T  20341679 ttattttggtgtttggggaattaataggagttaatagaaattatggggagttaagtg 20341623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 20348283 - 20348227
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtg 128  Q
    ||||||||||||||||||| ||||||| | ||| || || | |||||||||||||||    
T  20348283 ttattttggtgtttggggaattaataggagttaatagaaattatggggagttaagtg 20348227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 7e-39; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 72 - 161
Target Start/End: Original strand, 17881758 - 17881847
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttag 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  17881758 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgagaataaagggagttaagtaaatgggaagttag 17881847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 72 - 191
Target Start/End: Original strand, 19095744 - 19095862
Alignment:
Q  72 ttattttggtgtttggggagttaataga-atttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaaa 170  Q
    ||||||||| ||||||||||||| |  | | ||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||    
T  19095744 ttattttggagtttggggagttatttaatacttattaaaattaatggggagttaagtgaaaatatagggagttaagt-aatgggaagttaggaaaagaaa 19095842  T
Q  171 gaatcagaagcagttttacgt 191  Q
    | || |||||||||| |||||    
T  19095843 g-attagaagcagttgtacgt 19095862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 72 - 166
Target Start/End: Original strand, 10463176 - 10463271
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggg-gttaagtaaatgggaagttaggaaaa 166  Q
    ||||||||||||||||||||||||||||| |||||| || | ||||||||||||||| ||  ||||||| ||||||||||||||||||||||||||    
T  10463176 ttattttggtgtttggggagttaatagaagttattagaaattatggggagttaagtgtaataaaaggggagttaagtaaatgggaagttaggaaaa 10463271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 72 - 196
Target Start/End: Original strand, 8068651 - 8068774
Alignment:
Q  72 ttattttggtgtttggggagttaataga-atttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaaa 170  Q
    ||||||||| |||||||| |||| |  | ||||| || |||||||||||||||||||| |||| ||| | ||||||||| |||||||||||||||  | |    
T  8068651 ttattttggagtttggggggttatttaatatttaatataattaatggggagttaagtgtaaatgaagagagttaagtaagtgggaagttaggaaa--ata 8068748  T
Q  171 gaatcagaagcagttttacgtgaaaa 196  Q
    ||||||||||||||||||||||||||    
T  8068749 gaatcagaagcagttttacgtgaaaa 8068774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 72 - 171
Target Start/End: Complemental strand, 29160197 - 29160098
Alignment:
Q  72 ttattttggtgtttggggagttaataga-atttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaaa 170  Q
    ||||||||| ||||||||||||| |  | | ||||||||||||||||||||||||||||||||| | ||  |||||| ||||||||||||||||||||||    
T  29160197 ttattttggagtttggggagttatttaatacttattaaaattaatggggagttaagtgaaaatatatggatttaagt-aatgggaagttaggaaaagaaa 29160099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 191
Target Start/End: Original strand, 16222646 - 16222733
Alignment:
Q  102 ttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaaagaatcagaagcagttttacgt 191  Q
    |||||||| ||||| ||||||||| |||||||| |||| ||||||||| ||||||||||||||||||||| || |||||||||| |||||    
T  16222646 ttattaaagttaattgggagttaaatgaaaatatagggagttaagtaa-tgggaagttaggaaaagaaag-attagaagcagttgtacgt 16222733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 168
Target Start/End: Original strand, 17206701 - 17206797
Alignment:
Q  72 ttattttggtgtttggggagttaat-agaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaaga 168  Q
    |||||||||  | |||||||||||| ||||||||||| |||| ||||||||||||||||||||| |||| |||||||||| ||| ||||| |||||||    
T  17206701 ttattttggaatgtggggagttaattagaatttattagaatttatggggagttaagtgaaaatatagggagttaagtaaa-ggggagttaagaaaaga 17206797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 148
Target Start/End: Original strand, 23020322 - 23020399
Alignment:
Q  72 ttattttggtgtttggggagttaat-agaatttattaaaattaatggggagttaagtgaaaataaagggggttaagta 148  Q
    ||||||||| | ||||||||||||| ||||||||||| ||||||| |||||||||||||||||| |||| ||||||||    
T  23020322 ttattttgggggttggggagttaattagaatttattagaattaattgggagttaagtgaaaatatagggagttaagta 23020399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 172
Target Start/End: Complemental strand, 33876145 - 33876045
Alignment:
Q  72 ttattttggtgtttggggagttaataga-atttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaaa 170  Q
    ||||||||| ||||||||||||| |  | | |||||||| ||||| ||||||||| |||||||| |||| ||||||||| ||||||||||||||||||||    
T  33876145 ttattttggagtttggggagttatttaatagttattaaagttaatagggagttaaatgaaaatatagggagttaagtaa-tgggaagttaggaaaagaaa 33876047  T
Q  171 ga 172  Q
    ||    
T  33876046 ga 33876045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 165
Target Start/End: Complemental strand, 29926887 - 29926794
Alignment:
Q  72 ttattttggtgtttggggagttaataga-atttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaa 165  Q
    ||||||||| ||||||||||||| |  | ||||| || |||||| |||||| ||| ||||||||||||| |||||||||||||||||||||||||    
T  29926887 ttattttggagtttggggagttatttaatatttaatagaattaa-ggggagctaaatgaaaataaagggagttaagtaaatgggaagttaggaaa 29926794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 102 - 191
Target Start/End: Original strand, 25314633 - 25314719
Alignment:
Q  102 ttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaaagaatcagaagcagttttacgt 191  Q
    |||||||||||| ||||||| ||| |||||||| |||| ||||||||| ||||||||||||||||||||| || |||||||||| |||||    
T  25314633 ttattaaaattagtggggagctaa-tgaaaatatagggagttaagtaa-tgggaagttaggaaaagaaag-attagaagcagttgtacgt 25314719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 102 - 191
Target Start/End: Original strand, 26202127 - 26202213
Alignment:
Q  102 ttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaaagaatcagaagcagttttacgt 191  Q
    |||||||||||| ||||||| ||| |||||||| |||| ||||||||| ||||||||||||||||||||| || |||||||||| |||||    
T  26202127 ttattaaaattagtggggagctaa-tgaaaatatagggagttaagtaa-tgggaagttaggaaaagaaag-attagaagcagttgtacgt 26202213  T

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Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 27768552 - 27768496
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtg 128  Q
    ||||||||||||||| ||||||||||||||||| || |||| |||||||||| ||||    
T  27768552 ttattttggtgtttgaggagttaatagaatttaatagaatttatggggagtttagtg 27768496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 166
Target Start/End: Original strand, 93475 - 93569
Alignment:
Q  72 ttattttggtgtttggggagtta-atagaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaa 166  Q
    ||||||||| |||||||||||||  ||  ||||| || ||||||  ||||||||| ||||||||||||| |||||||||  |||||||||||||||    
T  93475 ttattttggagtttggggagttatttaatatttaatagaattaa-agggagttaaatgaaaataaagggagttaagtaagagggaagttaggaaaa 93569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 4107781 - 4107726
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtg 128  Q
    |||||||| ||||||| || |||||||||||||||||||||||  ||||||||||||    
T  4107781 ttattttgatgtttggagaattaatagaatttattaaaattaa-agggagttaagtg 4107726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 162
Target Start/End: Complemental strand, 13941624 - 13941533
Alignment:
Q  72 ttattttggtgtttggggagttaataga-atttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttagg 162  Q
    ||||||| | |||||||||||||||  | ||||| || |||||  |||||| ||| ||||||||| ||| |||| |||||||||||||||||    
T  13941624 ttattttagagtttggggagttaattaatatttaatagaattacgggggagctaaatgaaaataaggggagttacgtaaatgggaagttagg 13941533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 26417608 - 26417667
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaa 131  Q
    ||||||||| ||||||||||||| |||||||||||| || ||| ||||||| || |||||    
T  26417608 ttattttggagtttggggagttattagaatttattagaactaagggggagtaaaatgaaa 26417667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 12446155 - 12446209
Alignment:
Q  72 ttattttggtgtttggggagttaat-agaatttattaaaattaatggggagttaa 125  Q
    ||||||| | ||||||||||||||| ||||||||||| ||||| |||||||||||    
T  12446155 ttattttagagtttggggagttaattagaatttattagaattagtggggagttaa 12446209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 197
Target Start/End: Complemental strand, 28709820 - 28709697
Alignment:
Q  72 ttattttggtgtttggggagttaat-agaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaaa 170  Q
    ||||||||  || |||||| ||||| || ||||| || |||||| |||||||||| | ||||||| ||| |||| |||| |||||||||||||||||| |    
T  28709820 ttattttgtagtgtggggaattaattaggatttaatagaattaagggggagttaaataaaaataaggggagttatgtaa-tgggaagttaggaaaagaga 28709722  T
Q  171 gaatcagaagcagttttacgtgaaaac 197  Q
     |  ||||||||| |||||||||||||    
T  28709721 -aggcagaagcag-tttacgtgaaaac 28709697  T

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Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 168
Target Start/End: Original strand, 34132920 - 34133018
Alignment:
Q  72 ttattttggtgtttggggagttaataga-atttattaaaattaatggggagttaagtgaaaata-aagggggtta--agtaaatgggaagttaggaaaag 167  Q
    ||||||||| ||||||||||||| |  | ||||||||||||||| ||| |||||| |||||||| ||||| ||||  ||||| |||||||||||||||||    
T  34132920 ttattttggagtttggggagttatttaacatttattaaaattaaaggg-agttaaatgaaaatagaagggagttacaagtaa-tgggaagttaggaaaag 34133017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 11583572 - 11583500
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggggtta 144  Q
    |||||||||||||||||||  |||||| | |||||| || | ||||||||||||||  || ||||||| ||||    
T  11583572 ttattttggtgtttggggaaataataggagttattagaagttatggggagttaagtataattaaagggagtta 11583500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 131
Target Start/End: Original strand, 23233917 - 23233977
Alignment:
Q  71 tttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaa 131  Q
    |||||||||||||||||||||||| | || ||||||| |||||| ||| ||| || |||||    
T  23233917 tttattttggtgtttggggagttattggagtttattagaattaaggggaagtaaaatgaaa 23233977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 72 - 196
Target Start/End: Original strand, 13479950 - 13480072
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaaag 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||| | ||||||||| |||||||||||  ||| | ||    
T  13479950 ttattttggtgtttggggagttaatagaatttattaaaattaatggggggttaagtataaataaagagagttaagtaagtgggaagttag--aaaaatag 13480047  T
Q  172 aatcagaagcagttttacgtgaaaa 196  Q
    |||||||||||||||||||||||||    
T  13480048 aatcagaagcagttttacgtgaaaa 13480072  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 72 - 161
Target Start/End: Original strand, 47870014 - 47870104
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggg-gttaagtaaatgggaagttag 161  Q
    |||| |||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  47870014 ttatcttggtgtttggggagttaatagaaattattaaaagtaatggggagttaaatgaaaataaaggggagttaagtaaatgggaagttag 47870104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 72 - 166
Target Start/End: Original strand, 54825116 - 54825209
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaa 166  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||  ||||||||||||||    
T  54825116 ttattttggagtttggggagttaatagaatttattaaaattaatggagagttaagtgaaaataaagggagttaagt-aagaggaagttaggaaaa 54825209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 72 - 166
Target Start/End: Complemental strand, 34773353 - 34773260
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaa 166  Q
    |||||||||||||||||||||||||| |||||| |||||||||  ||||||||| ||||||||||||| |||||||||  |||||||||||||||    
T  34773353 ttattttggtgtttggggagttaatataatttaataaaattaa-agggagttaaatgaaaataaagggagttaagtaagagggaagttaggaaaa 34773260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 102 - 191
Target Start/End: Original strand, 44656739 - 44656826
Alignment:
Q  102 ttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaaagaatcagaagcagttttacgt 191  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||| || |||||||||| |||||    
T  44656739 ttattaaaattaatggggagttaagtgaaaatatagggagttaagtaaa-gggaagttaggaaaagaaag-attagaagcagttgtacgt 44656826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 102 - 191
Target Start/End: Original strand, 44662660 - 44662747
Alignment:
Q  102 ttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaaagaatcagaagcagttttacgt 191  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||| || |||||||||| |||||    
T  44662660 ttattaaaattaatggggagttaagtgaaaatatagggagttaagtaaa-gggaagttaggaaaagaaag-attagaagcagttgtacgt 44662747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 72 - 191
Target Start/End: Complemental strand, 41271570 - 41271452
Alignment:
Q  72 ttattttggtgtttggggagttaataga-atttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaaa 170  Q
    ||||||||| ||||||||||||| |  | | ||||||||||||||||||||||||||||||||| |||| ||||||| ||||| ||||||||||||||||    
T  41271570 ttattttggagtttggggagttatttaatacttattaaaattaatggggagttaagtgaaaatatagggagttaagt-aatggaaagttaggaaaagaaa 41271472  T
Q  171 gaatcagaagcagttttacgt 191  Q
    | || |||||||||| |||||    
T  41271471 g-attagaagcagttgtacgt 41271452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 72 - 168
Target Start/End: Complemental strand, 52501690 - 52501594
Alignment:
Q  72 ttattttggtgtttggggagttaataga-atttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaaga 168  Q
    ||||||||| ||||||||||||| |  | |||||||||| |||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||    
T  52501690 ttattttggagtttggggagttatttaatatttattaaagttaatggggagttaagtgaaaatatagggagttaagt-aatgggaagttaggaaaaga 52501594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 5173130 - 5173080
Alignment:
Q  20 tatcaaattatattgataagaaagaaaagtaggaatgacacttcctttgtc 70  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5173130 tatcaaattatattgataagaaagaaaagtaggaatgacacttcctttgtc 5173080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 4842395 - 4842442
Alignment:
Q  20 tatcaaattatattgataagaaagaaaagtaggaatgacacttccttt 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4842395 tatcaaattatattgataagaaagaaaagtaggaatgacacttccttt 4842442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 72 - 166
Target Start/End: Complemental strand, 20890511 - 20890416
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtga-aaataaagggggttaagtaaatgggaagttaggaaaa 166  Q
    ||||||||||||||||||||||||||||||||| || |||||| ||||||| || ||| || ||||  | ||||||||| ||||||||||||||||    
T  20890511 ttattttggtgtttggggagttaatagaatttaatagaattaagggggagtaaaatgagaattaaaaagagttaagtaagtgggaagttaggaaaa 20890416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 5160213 - 5160164
Alignment:
Q  21 atcaaattatattgataagaaagaaaagtaggaatgacacttcctttgtc 70  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5160213 atcaaattgtattgataagaaagaaaagtaggaatgacacttcctttgtc 5160164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 168
Target Start/End: Complemental strand, 33098235 - 33098140
Alignment:
Q  72 ttattttggtgtttggggagttaat-agaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaaga 168  Q
    |||||||||||||| |||||||||| ||||||||||| |||| ||||||||||||||| ||||| |||| |||||||||| ||| ||||| |||||||    
T  33098235 ttattttggtgttttgggagttaattagaatttattagaatttatggggagttaagtg-aaatatagggagttaagtaaa-ggggagttaagaaaaga 33098140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 168
Target Start/End: Original strand, 37837582 - 37837678
Alignment:
Q  72 ttattttggtgtttggggagttaat-agaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaaga 168  Q
    ||||||||| ||||||||| ||||| || ||||| || |||||| |||||||||| ||||||||| ||| ||||||||| ||||||||||||||||||    
T  37837582 ttattttggagtttggggaattaattaggatttaatagaattaagggggagttaaatgaaaataaggggagttaagtaa-tgggaagttaggaaaaga 37837678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 72 - 168
Target Start/End: Complemental strand, 900735 - 900640
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaaga 168  Q
    ||||||||| |||||||||||||||||||||||||| |||||   |||||| || |||||  | |||| ||||||| ||||||||||||||||||||    
T  900735 ttattttggagtttggggagttaatagaatttattagaattaggagggagtaaaatgaaataatagggagttaagt-aatgggaagttaggaaaaga 900640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 5182464 - 5182412
Alignment:
Q  15 aagaatatcaaattatattgataagaaagaaaagtaggaatgacacttccttt 67  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  5182464 aagaatatcaaattatattgatatgaaagaaaagtaggaatgacacctccttt 5182412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 5214021 - 5213969
Alignment:
Q  18 aatatcaaattatattgataagaaagaaaagtaggaatgacacttcctttgtc 70  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  5214021 aatatcaaactatattgatatgaaagaaaagtaggaatgacacttcctttgtc 5213969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 72 - 127
Target Start/End: Original strand, 2947540 - 2947595
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagt 127  Q
    ||||||||||||||||||||||||||||||||| || |||| ||||||||||||||    
T  2947540 ttattttggtgtttggggagttaatagaatttaatagaatttatggggagttaagt 2947595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 4856867 - 4856918
Alignment:
Q  15 aagaatatcaaattatattgataagaaagaaaagtaggaatgacacttcctt 66  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  4856867 aagaataccaaattatattgatatgaaagaaaagtaggaatgacacttcctt 4856918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 72 - 166
Target Start/End: Complemental strand, 20896138 - 20896043
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtga-aaataaagggggttaagtaaatgggaagttaggaaaa 166  Q
    ||||||||||||||||||||||||||||||| | || |||||| ||||||| || ||| || ||||  | ||||||||| ||||||||||||||||    
T  20896138 ttattttggtgtttggggagttaatagaattaaatagaattaagggggagtaaaatgagaattaaaaagagttaagtaagtgggaagttaggaaaa 20896043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 11201203 - 11201259
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtg 128  Q
    ||||||||||||||||||||||||||||||||| || |||| |||||||||| ||||    
T  11201203 ttattttggtgtttggggagttaatagaatttaatagaatttatggggagtttagtg 11201259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 35461339 - 35461395
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtg 128  Q
    ||||||||||||||||||||||||||||||||| || |||| |||||||||| ||||    
T  35461339 ttattttggtgtttggggagttaatagaatttaatagaatttatggggagtttagtg 35461395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 5195853 - 5195810
Alignment:
Q  23 caaattatattgataagaaagaaaagtaggaatgacacttcctt 66  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  5195853 caaattatattgatatgaaagaaaagtaggaatgacacttcctt 5195810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 168
Target Start/End: Original strand, 42596287 - 42596372
Alignment:
Q  83 tttggggagttaat-agaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaaga 168  Q
    |||||||| ||||| || ||||| || |||||| |||||||||| ||||||||| ||| ||||||||| ||||||||||||||||||    
T  42596287 tttggggaattaattaggatttaatagaattaagggggagttaaatgaaaataaggggagttaagtaa-tgggaagttaggaaaaga 42596372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 169
Target Start/End: Original strand, 45141483 - 45141579
Alignment:
Q  72 ttattttggtgtttggggagttaataga-atttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaa 169  Q
    ||||||||| ||||||||||||| |  | |||||||||||||||||||||||||| |||||   ||||| ||||| | |||||||||||||||||||||    
T  45141483 ttattttggagtttggggagttatttaatatttattaaaattaatggggagttaa-tgaaatagaagggagttaa-ttaatgggaagttaggaaaagaa 45141579  T

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Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 37622247 - 37622302
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtg 128  Q
    ||||||||||||||| ||| |||||||||||||||||||||||  ||||||||||||    
T  37622247 ttattttggtgtttgtggaattaatagaatttattaaaattaa-agggagttaagtg 37622302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 42221574 - 42221518
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtg 128  Q
    ||||||||| |||||||||||||||| ||||||||| ||||||  ||||||||||||    
T  42221574 ttattttggagtttggggagttaatataatttattagaattaagagggagttaagtg 42221518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 73 - 169
Target Start/End: Complemental strand, 5940072 - 5939974
Alignment:
Q  73 tattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaata-aagggggtta-agtaaatgggaagttaggaaaagaa 169  Q
    |||||||||||||||||||||||||||| ||| |  || | |||||||||||| |||||||| ||||| |||| | | |||||| ||||| ||||||||    
T  5940072 tattttggtgtttggggagttaatagaagttaatggaaattatggggagttaaatgaaaatagaagggagttacaattaatgggtagttaagaaaagaa 5939974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 13629974 - 13629912
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaata 134  Q
    ||||||||||||||||||| ||||||| | ||| || || | |||||||||||||||||||||    
T  13629974 ttattttggtgtttggggaattaataggagttaatagaaattatggggagttaagtgaaaata 13629912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 105
Target Start/End: Original strand, 11207944 - 11207977
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttat 105  Q
    ||||||||||||||||||||||||||||||||||    
T  11207944 ttattttggtgtttggggagttaatagaatttat 11207977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 46042372 - 46042429
Alignment:
Q  72 ttattttggtgtttggggagttaat-agaatttattaaaattaatggggagttaagtg 128  Q
    ||||||||  ||||||||||||||| ||||||||||| ||||||||| ||||||||||    
T  46042372 ttattttgaagtttggggagttaattagaatttattagaattaatggagagttaagtg 46042429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 19127325 - 19127376
Alignment:
Q  114 atggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaa 166  Q
    |||||||||||||||||| | ||||| ||||||||| ||||||||||||||||    
T  19127325 atggggagttaagtgaaa-tgaagggagttaagtaagtgggaagttaggaaaa 19127376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 106
Target Start/End: Original strand, 23434918 - 23434952
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttatt 106  Q
    ||||||||||||||||||| |||||||||||||||    
T  23434918 ttattttggtgtttggggaattaatagaatttatt 23434952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 197
Target Start/End: Complemental strand, 30240263 - 30240138
Alignment:
Q  72 ttattttggtgtttggggagttaat-agaatttattaaaattaatggggagttaagtgaaaataaagggg-gttaagtaaatgggaagttaggaaaagaa 169  Q
    ||||||||| | || |||| ||||| |||| ||| || |||||| |||||||||| ||||| |||||||| |||| |||  | || ||||||||||||||    
T  30240263 ttattttggaggttagggatttaattagaaattaatagaattaagggggagttaaatgaaa-taaaggggagttatgta--ttgggagttaggaaaagaa 30240167  T
Q  170 agaatcagaa-gcagttttacgtgaaaac 197  Q
    | | |||||| ||||||||||||||||||    
T  30240166 acagtcagaaagcagttttacgtgaaaac 30240138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 128
Target Start/End: Complemental strand, 30397274 - 30397230
Alignment:
Q  84 ttggggagttaatagaatttattaaaattaatggggagttaagtg 128  Q
    |||||||||||||| ||||||||| ||||||  ||||||||||||    
T  30397274 ttggggagttaatataatttattagaattaagagggagttaagtg 30397230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 42955032 - 42955076
Alignment:
Q  117 gggagttaagtgaaaataaagggggttaagtaaatgggaagttag 161  Q
    ||||||||| ||||||||||||| |||||||||  ||||||||||    
T  42955032 gggagttaaatgaaaataaagggagttaagtaagagggaagttag 42955076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 7e-39; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 72 - 161
Target Start/End: Original strand, 35243500 - 35243589
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttag 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  35243500 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggagttaagtaaatgagaagttag 35243589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 72 - 168
Target Start/End: Original strand, 25589594 - 25589689
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaaga 168  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||| ||| ||||| |||||||    
T  25589594 ttattttggtgtttggggagttaatagaatttattagaatttatggggagttaagtgaaaataaagggagttaagtaaa-ggggagttaagaaaaga 25589689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 72 - 191
Target Start/End: Original strand, 2384861 - 2384979
Alignment:
Q  72 ttattttggtgtttggggagttaataga-atttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaaa 170  Q
    ||||||||| ||||||||||||| |  | | |||||||||||||||||| |||||||||||||| |||| ||||||| ||||||||||||||||||||||    
T  2384861 ttattttggagtttggggagttatttaatacttattaaaattaatggggtgttaagtgaaaatatagggagttaagt-aatgggaagttaggaaaagaaa 2384959  T
Q  171 gaatcagaagcagttttacgt 191  Q
    | || |||||||||| |||||    
T  2384960 g-attagaagcagttgtacgt 2384979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 72 - 191
Target Start/End: Complemental strand, 27038437 - 27038319
Alignment:
Q  72 ttattttggtgtttggggagttaataga-atttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaaa 170  Q
    ||||||| | ||||||||||||| |  | |||||||||| |||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||    
T  27038437 ttattttagagtttggggagttatttaatatttattaaagttaatggggagttaagtgaaaatatagggagttaagt-aatgggaagttaggaaaagaaa 27038339  T
Q  171 gaatcagaagcagttttacgt 191  Q
    | || |||||||||| |||||    
T  27038338 g-attagaagcagttgtacgt 27038319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 72 - 197
Target Start/End: Original strand, 28970214 - 28970337
Alignment:
Q  72 ttattttggtgtttggggagttaa-tagaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaaa 170  Q
    ||||||||| |||||||||||||| ||| ||||| || |||||| |||||||||| ||||||||| ||| ||||||| |||||||||||||||||||| |    
T  28970214 ttattttggagtttggggagttaattaggatttaatagaattaagggggagttaaatgaaaataaggggagttaagt-aatgggaagttaggaaaagaga 28970312  T
Q  171 gaatcagaagcagttttacgtgaaaac 197  Q
     | |||||||||| |||||||||||||    
T  28970313 -agtcagaagcag-tttacgtgaaaac 28970337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 117 - 198
Target Start/End: Complemental strand, 27273298 - 27273219
Alignment:
Q  117 gggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaaagaatcagaagcagttttacgtgaaaacc 198  Q
    ||||||||| || |||||||||| |||||||||  ||||||||||||||  | |||||||||||||||||||||||||||||    
T  27273298 gggagttaaatggaaataaagggagttaagtaagagggaagttaggaaa--atagaatcagaagcagttttacgtgaaaacc 27273219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 165
Target Start/End: Original strand, 15642237 - 15642330
Alignment:
Q  72 ttattttggtgtttggggagttaataga-atttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaa 165  Q
    ||||||||| ||||||||||||| |  | ||||| || |||||| |||||| ||| ||||||||||||| |||||||||||||||||||||||||    
T  15642237 ttattttggagtttggggagttatttaatatttaatagaattaa-ggggagctaaatgaaaataaagggagttaagtaaatgggaagttaggaaa 15642330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 72 - 166
Target Start/End: Complemental strand, 36801748 - 36801654
Alignment:
Q  72 ttattttggtgtttggggagttaataga-atttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaa 166  Q
    ||||||||| ||||||||||||| |  | ||||| || |||||| |||||| ||| ||||||||||||| ||||||||| ||||||||||||||||    
T  36801748 ttattttggagtttggggagttatttaatatttaatagaattaa-ggggagctaaatgaaaataaagggagttaagtaattgggaagttaggaaaa 36801654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 197
Target Start/End: Original strand, 32910455 - 32910550
Alignment:
Q  100 atttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaaagaatcagaagcagttttacgtgaaaac 197  Q
    ||||| || ||||||  ||||||||| ||||||||| ||| ||||||||||||||||| |||||||| | ||  ||||||||| ||||||||||||||    
T  32910455 atttaatagaattaagagggagttaaatgaaaataaggggagttaagtaaatgggaagataggaaaatagag-gtcagaagca-ttttacgtgaaaac 32910550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 35246 - 35191
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtg 128  Q
    |||||||||||||| |||| |||||||||||||||||||||||  ||||||||||||    
T  35246 ttattttggtgttttgggaattaatagaatttattaaaattaa-agggagttaagtg 35191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 166
Target Start/End: Complemental strand, 11467214 - 11467120
Alignment:
Q  72 ttattttggtgtttggggagtta-atagaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaa 166  Q
    ||||||||| |||||||||||||  ||  ||||| || ||||||  ||||||||| ||||||||||||| |||||||||  |||||||||||||||    
T  11467214 ttattttggagtttggggagttatttaatatttaatagaattaa-agggagttaaatgaaaataaagggagttaagtaagagggaagttaggaaaa 11467120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 191
Target Start/End: Original strand, 24425827 - 24425898
Alignment:
Q  117 gggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaaagaatcagaagcagttttacgt 191  Q
    ||||||||| ||||| || |||| ||||||||| ||||||||||||||||||||| || |||||||||| |||||    
T  24425827 gggagttaaatgaaa-tatagggagttaagtaa-tgggaagttaggaaaagaaag-attagaagcagttgtacgt 24425898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 27730684 - 27730623
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaata 134  Q
    |||||||||||||| ||||  ||||||||||||||| |||| ||| ||||||||||| |||||    
T  27730684 ttattttggtgtttagggaaataatagaatttattagaatt-atgaggagttaagtgtaaata 27730623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 11359181 - 11359237
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtg 128  Q
    |||||||||||||||||||  |||||| | |||||| || | |||||||||||||||    
T  11359181 ttattttggtgtttggggaaataataggagttattagaaattatggggagttaagtg 11359237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 71 - 198
Target Start/End: Complemental strand, 25841 - 25716
Alignment:
Q  71 tttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaaa 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||  ||||||||||||||   |     
T  25841 tttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaatgatgggagttaagtaagagggaagttaggaaatagat 25742  T
Q  171 gaatcagaagcagttttacgtgaaaacc 198  Q
    |  |||||||||||||||||||||||||    
T  25741 g--tcagaagcagttttacgtgaaaacc 25716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 71 - 198
Target Start/End: Complemental strand, 36509 - 36384
Alignment:
Q  71 tttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaaa 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||  ||||||||||||||   |     
T  36509 tttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaatgatgggagttaagtaagagggaagttaggaaatagat 36410  T
Q  171 gaatcagaagcagttttacgtgaaaacc 198  Q
    |  |||||||||||||||||||||||||    
T  36409 g--tcagaagcagttttacgtgaaaacc 36384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 72 - 198
Target Start/End: Complemental strand, 42916 - 42792
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaaag 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||  ||||||||||||||   | |    
T  42916 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaatgatgggagttaagtaagagggaagttaggaaa--tagg 42819  T
Q  172 aatcagaagcagttttacgtgaaaacc 198  Q
      |||||||||||||||||||||||||    
T  42818 tgtcagaagcagttttacgtgaaaacc 42792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 72 - 198
Target Start/End: Complemental strand, 42627392 - 42627266
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaaag 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||  ||||||||||||||| | |     
T  42627392 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaaatgaaaataaagggagttaagtaagagggaagttaggaaaataga- 42627294  T
Q  172 aatcagaagcag-ttttacgtgaaaacc 198  Q
      |||||||||| |||||||||||||||    
T  42627293 tgtcagaagcagtttttacgtgaaaacc 42627266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 72 - 195
Target Start/End: Complemental strand, 12203795 - 12203672
Alignment:
Q  72 ttattttggtgtttggggagttaataga-atttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaaa 170  Q
    ||||||||| ||||||||||||| |  | |||||||||| |||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||    
T  12203795 ttattttggagtttggggagttatttaatatttattaaagttaatggggagttaagtgaaaatatagggagttaagtaa-tgggaagttaggaaaagaaa 12203697  T
Q  171 gaatcagaagcagttttacgtgaaa 195  Q
    ||||||||| | |||||||||||||    
T  12203696 gaatcagaaactgttttacgtgaaa 12203672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 72 - 195
Target Start/End: Original strand, 38906974 - 38907097
Alignment:
Q  72 ttattttggtgtttggggagttaataga-atttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaaa 170  Q
    ||||||||| ||||||||||||| |  | |||||||||| |||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||    
T  38906974 ttattttggagtttggggagttatttaatatttattaaagttaatggggagttaagtgaaaatatagggagttaagtaa-tgggaagttaggaaaagaaa 38907072  T
Q  171 gaatcagaagcagttttacgtgaaa 195  Q
    ||||||||| | |||||||||||||    
T  38907073 gaatcagaaactgttttacgtgaaa 38907097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 72 - 131
Target Start/End: Complemental strand, 47485301 - 47485242
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaa 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47485301 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaa 47485242  T

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Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 72 - 195
Target Start/End: Complemental strand, 21921983 - 21921864
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggg-gttaagtaaatgggaagttaggaaaagaaa 170  Q
    |||||||||||||||||||  |||||||| |||||| |||| |||||||||||||||| ||| |||||| ||||||| ||||||||||||||||||||||    
T  21921983 ttattttggtgtttggggaaataatagaaattattagaatt-atggggagttaagtgataattaaggggagttaagt-aatgggaagttaggaaaagaaa 21921886  T
Q  171 gaatcagaagcagttttacgtgaaa 195  Q
    |  |||||| | |||||||||||||    
T  21921885 g--tcagaa-ctgttttacgtgaaa 21921864  T

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Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 84 - 168
Target Start/End: Complemental strand, 43089561 - 43089477
Alignment:
Q  84 ttggggagttaat-agaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaaga 168  Q
    ||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||    
T  43089561 ttggggagttaattagagtttattagaattaatggggagttaagtgaaaataaagggagttaagtaaa-ggggagttaggaaaaga 43089477  T

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Target: chr1; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 102 - 191
Target Start/End: Complemental strand, 6741680 - 6741593
Alignment:
Q  102 ttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaaagaatcagaagcagttttacgt 191  Q
    |||||||| ||||||||||||||| |||||||| |||| ||||||| ||||||||||||||||||||||| || |||||||||| |||||    
T  6741680 ttattaaagttaatggggagttaaatgaaaatatagggagttaagt-aatgggaagttaggaaaagaaag-attagaagcagttgtacgt 6741593  T

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Target: chr1; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 72 - 168
Target Start/End: Complemental strand, 36616122 - 36616026
Alignment:
Q  72 ttattttggtgtttggggagttaat-agaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaaga 168  Q
    ||||||||| | ||||||||||||| ||||||||||| ||||||| |||||||||||||||||| |||| |||||||| | ||| |||||||||||||    
T  36616122 ttattttgggggttggggagttaattagaatttattagaattaatagggagttaagtgaaaatagagggagttaagtaca-ggggagttaggaaaaga 36616026  T

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Target: chr1; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 72 - 166
Target Start/End: Complemental strand, 49329224 - 49329129
Alignment:
Q  72 ttattttggtgtttggggagttaataga-atttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaa 166  Q
    ||||||||| |||||||||||||||  | ||||| || |||||| ||||| |||| ||||||||| ||| ||||||||||||||||||||||||||    
T  49329224 ttattttggagtttggggagttaattaatatttaatagaattaagggggatttaaatgaaaataaggggagttaagtaaatgggaagttaggaaaa 49329129  T

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Target: chr1; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 117 - 198
Target Start/End: Complemental strand, 4232336 - 4232257
Alignment:
Q  117 gggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaaagaatcagaagcagttttacgtgaaaacc 198  Q
    ||||||||| || |||||||||| |||||||||  ||||||||||||||  | |||||||||||||||||||||||||||||    
T  4232336 gggagttaaatggaaataaagggagttaagtaagagggaagttaggaaa--atagaatcagaagcagttttacgtgaaaacc 4232257  T

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Target: chr1; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 72 - 197
Target Start/End: Complemental strand, 11946693 - 11946570
Alignment:
Q  72 ttattttggtgtttggggagttaat-agaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaaa 170  Q
    |||||||||  |||||||| ||||| || ||||| || |||||| |||||||||| ||||||||| ||| ||||||||| |||||||||||||||||| |    
T  11946693 ttattttggattttggggaattaattaggatttaatagaattaagggggagttaaatgaaaataaggggagttaagtaa-tgggaagttaggaaaagaga 11946595  T
Q  171 gaatcagaagcagttttacgtgaaaac 197  Q
     | |||||||||| |||||||||||||    
T  11946594 -agtcagaagcag-tttacgtgaaaac 11946570  T

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Target: chr1; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 168
Target Start/End: Complemental strand, 18419317 - 18419222
Alignment:
Q  72 ttattttggtgtttggggagttaataga-atttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaaga 168  Q
    ||||||||| ||||||||||||| |  | |||||||||| ||||||||| |||||||||||||| |||| ||||||| ||||||||||||||||||||    
T  18419317 ttattttggagtttggggagttatttaatatttattaaagttaatgggg-gttaagtgaaaatatagggagttaagt-aatgggaagttaggaaaaga 18419222  T

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Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 168
Target Start/End: Original strand, 29601219 - 29601313
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggg-gttaagtaaatgggaagttaggaaaaga 168  Q
    ||||||||| ||||||| |  |||||||| |||||| ||||| ||||||||||||||| ||| |||||| ||||||||| ||||||||||||||||||    
T  29601219 ttattttgg-gtttgggaaaataatagaaattattagaatta-tggggagttaagtgataattaaggggagttaagtaa-tgggaagttaggaaaaga 29601313  T

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Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 17150509 - 17150454
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtg 128  Q
    ||||||||||||||| ||| |||||||||||||||||||||||  ||||||||||||    
T  17150509 ttattttggtgtttgaggaattaatagaatttattaaaattaa-agggagttaagtg 17150454  T

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Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 140
Target Start/End: Original strand, 24237354 - 24237421
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggg 140  Q
    ||||||| | |||||||||||||||| ||||||||| |||| | ||||||||||||| |||||||||||    
T  24237354 ttattttagagtttggggagttaatataatttattagaatttacggggagttaagtg-aaataaagggg 24237421  T

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Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 166
Target Start/End: Complemental strand, 36918311 - 36918218
Alignment:
Q  72 ttattttggtgtttggggagtta-atagaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaa 166  Q
    ||||||||| |||||||||||||  ||  ||||| || |||| ||||||||||||||| |||| ||||| ||||||||| ||||||||||||||||    
T  36918311 ttattttggagtttggggagttatttaatatttaatagaatt-atggggagttaagtg-aaatgaagggagttaagtaagtgggaagttaggaaaa 36918218  T

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Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 73 - 166
Target Start/End: Complemental strand, 21964200 - 21964107
Alignment:
Q  73 tattttggtgtttggggagtta-atagaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaa 166  Q
    |||||||| |||||||||||||  ||  ||||| || ||||||  ||||||||| ||||||||||||| |||||||||  |||||||||||||||    
T  21964200 tattttggagtttggggagttatttaatatttaatagaattaa-agggagttaaatgaaaataaagggagttaagtaagagggaagttaggaaaa 21964107  T

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Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 197
Target Start/End: Original strand, 31926250 - 31926375
Alignment:
Q  72 ttattttggtgtttggggagttaat-agaatttattaaaattaatggggagttaagtgaaaataaagggg-gttaagtaaatgggaagttaggaaaagaa 169  Q
    ||||||||| | ||||||| ||||| |||| ||| || |||||| |||||||||| ||||| |||||||| |||| |||  | || ||||||||||||||    
T  31926250 ttattttggaggttggggatttaattagaaattaatagaattaagggggagttaaatgaaa-taaaggggagttatgta--ttgggagttaggaaaagaa 31926346  T
Q  170 agaatcagaa-gcagttttacgtgaaaac 197  Q
    | | |||||| ||||||||||||||||||    
T  31926347 acagtcagaaagcagttttacgtgaaaac 31926375  T

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Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 19045218 - 19045277
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaa 131  Q
    |||||||||||||||||||||| |||||| ||| || || | |||||||||||| |||||    
T  19045218 ttattttggtgtttggggagtttatagaagttaatagaaattatggggagttaaatgaaa 19045277  T

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Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 165
Target Start/End: Complemental strand, 24425231 - 24425137
Alignment:
Q  72 ttattttggtgttt-ggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaa 165  Q
    |||||||||||||| ||||||||||||||| ||| || || | |||||||||||| |||||    |||| |||||||||  |||||||| |||||    
T  24425231 ttattttggtgttttggggagttaatagaagttaatagaaattatggggagttaaatgaaatattagggagttaagtaagagggaagttgggaaa 24425137  T

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Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 41052937 - 41052876
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaata 134  Q
    |||||||||||||| ||||  ||||||||||||||| |||| ||| ||||||||||| |||||    
T  41052937 ttattttggtgtttagggaaataatagaatttattagaatt-atgaggagttaagtgtaaata 41052876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 20571934 - 20571878
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtg 128  Q
    ||||||||||||||||||| ||||||| | ||| || || | |||||||||||||||    
T  20571934 ttattttggtgtttggggaattaataggagttaatagaaattatggggagttaagtg 20571878  T

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Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 21245456 - 21245400
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtg 128  Q
    |||||||||||||||||||  |||||| | |||||| || | |||||||||||||||    
T  21245456 ttattttggtgtttggggaaataataggagttattagaaattatggggagttaagtg 21245400  T

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Target: chr3 (Bit Score: 79; Significance: 4e-37; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 75 - 168
Target Start/End: Complemental strand, 15375818 - 15375724
Alignment:
Q  75 ttttggtgtttggggagttaat-agaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaaga 168  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  15375818 tttttgtgtttggggagttaattagaatttattaaaattaatggggagttaagtgaaaataaagggagttaagtaaatgggaagttaggaaaaga 15375724  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 72 - 166
Target Start/End: Original strand, 16330591 - 16330685
Alignment:
Q  72 ttattttggtgtttggggagttaat-agaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaa 166  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||| ||||| |||||||||  |||||||||||||||    
T  16330591 ttattttggtgtttggggagttaattagaatttattaaaattaatgggg-gtttagtgaaaatgaagggagttaagtaagagggaagttaggaaaa 16330685  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 72 - 172
Target Start/End: Original strand, 891503 - 891603
Alignment:
Q  72 ttattttggtgtttggggagttaataga-atttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaaa 170  Q
    ||||||||| ||||||||||||| |  | | ||||||||||||||||| ||||||||||||||| |||| ||||||| ||||||||||||||||||||||    
T  891503 ttattttggagtttggggagttatttaataattattaaaattaatgggaagttaagtgaaaatatagggagttaagt-aatgggaagttaggaaaagaaa 891601  T
Q  171 ga 172  Q
    ||    
T  891602 ga 891603  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 72 - 195
Target Start/End: Complemental strand, 21353362 - 21353240
Alignment:
Q  72 ttattttggtgtttggggagttaataga-atttattaaaattaatggggagttaagtgaaaataa-agggggttaagtaaatgggaagttaggaaaagaa 169  Q
    ||||||||| ||||||||||||| |  | | |||||||||||| ||||||| ||| || |||||  |||| ||||||||| |||||||||||||||||||    
T  21353362 ttattttggagtttggggagttatttaataattattaaaatta-tggggagctaa-tggaaatattagggagttaagtaa-tgggaagttaggaaaagaa 21353266  T
Q  170 agaatcagaagcagttttacgtgaaa 195  Q
    ||||||||||||||||||||||||||    
T  21353265 agaatcagaagcagttttacgtgaaa 21353240  T

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Target: chr3; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 72 - 168
Target Start/End: Complemental strand, 29552087 - 29551992
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggg-gttaagtaaatgggaagttaggaaaaga 168  Q
    |||||||| ||||||||||  |||||||| |||||| ||||| ||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||    
T  29552087 ttattttgatgtttggggaaataatagaagttattagaatta-tggggagttaagtgaaaattaaggggagttaagt-aatgggaagttaggaaaaga 29551992  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 168
Target Start/End: Original strand, 9690446 - 9690541
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggg-gttaagtaaatgggaagttaggaaaaga 168  Q
    |||||||||||||||| ||  |||||||| |||||| |||| |||||||||||||||| ||| |||||| ||||||| ||||||||||||||||||||    
T  9690446 ttattttggtgtttggcgaaataatagaagttattagaatt-atggggagttaagtgataattaaggggagttaagt-aatgggaagttaggaaaaga 9690541  T

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Target: chr3; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 72 - 131
Target Start/End: Complemental strand, 18962139 - 18962079
Alignment:
Q  72 ttattttggtgtttggggagttaat-agaatttattaaaattaatggggagttaagtgaaa 131  Q
    ||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  18962139 ttattttggagtttggggagttaattagaatttattagaattaatggggagttaagtgaaa 18962079  T

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Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 197
Target Start/End: Original strand, 45219201 - 45219323
Alignment:
Q  72 ttattttggtgtttggggagttaat-agaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaaa 170  Q
    ||||||||| ||||||||| ||||| || ||||| || |||||| |||| ||||| ||||||||| ||| ||||||||| |||||||||||||||||| |    
T  45219201 ttattttggagtttggggaattaattaggatttaatagaattaaggggg-gttaaatgaaaataaggggagttaagtaa-tgggaagttaggaaaagaga 45219298  T
Q  171 gaatcagaagcagttttacgtgaaaac 197  Q
     | |||||||||| |||||||||||||    
T  45219299 -agtcagaagcag-tttacgtgaaaac 45219323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 72 - 168
Target Start/End: Original strand, 20376221 - 20376316
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaag-ggggttaagtaaatgggaagttaggaaaaga 168  Q
    |||||||||||||||||||  |||||||| |||||| |||| |||||||||||||||| ||| ||| || ||||||| ||||| ||||||||||||||    
T  20376221 ttattttggtgtttggggaaataatagaaattattagaatt-atggggagttaagtgataattaagaggagttaagt-aatggaaagttaggaaaaga 20376316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 72 - 168
Target Start/End: Original strand, 30595834 - 30595930
Alignment:
Q  72 ttattttggtgtttggggagttaataga-atttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaaga 168  Q
    ||||||||| ||||||||||||| |  | ||||| || |||||| |||||||||| ||||||||||||| ||||||||||||| ||||| ||||||||    
T  30595834 ttattttggagtttggggagttatttaatatttaatagaattaa-ggggagttaaatgaaaataaagggagttaagtaaatggaaagttgggaaaaga 30595930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 72 - 168
Target Start/End: Original strand, 46070089 - 46070184
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggg-gttaagtaaatgggaagttaggaaaaga 168  Q
    ||||||||||| |||||||  |||||||| |||||| |||| |||||||||||||||| ||| |||||| ||||||| ||||| ||||||||||||||    
T  46070089 ttattttggtggttggggaaataatagaaattattagaatt-atggggagttaagtgataattaaggggagttaagt-aatggaaagttaggaaaaga 46070184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 9770893 - 9770948
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtg 128  Q
    ||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||    
T  9770893 ttattttggtgtttggggaattaatagaatttattaaaattaa-agggagttaagtg 9770948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 72 - 166
Target Start/End: Original strand, 32386993 - 32387088
Alignment:
Q  72 ttattttggtgtttggggagttaataga-atttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaa 166  Q
    ||||||||| ||||| |||||||||  | ||||| || |||||| |||||||||| ||||||||| ||| ||||||||||||| ||||| ||||||    
T  32386993 ttattttggagtttgaggagttaattaatatttaatagaattaagggggagttaaatgaaaataaggggagttaagtaaatggaaagttgggaaaa 32387088  T

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Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 196
Target Start/End: Original strand, 12724106 - 12724227
Alignment:
Q  72 ttattttggtgtttggggagttaataga-atttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaaa 170  Q
    |||| |||| ||||||||||||| |  | ||||| || |||||| |||||||||| ||||||||||| | ||||||| |||||||||||||||||||| |    
T  12724106 ttatgttggagtttggggagttatttaatatttaatagaattaa-ggggagttaaatgaaaataaagagagttaagt-aatgggaagttaggaaaagaga 12724203  T
Q  171 gaatcagaagcagttttacgtgaaaa 196  Q
     | |||||||||| ||||||||||||    
T  12724204 -agtcagaagcag-tttacgtgaaaa 12724227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 19343257 - 19343317
Alignment:
Q  98 gaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagtt 159  Q
    ||||||||||||| ||||||||||||||||| |||| ||||| ||||||||| |||||||||    
T  19343257 gaatttattaaaaataatggggagttaagtg-aaatgaagggagttaagtaagtgggaagtt 19343317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 48773590 - 48773646
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtg 128  Q
    |||||||||||||||||||||||||||||||||  | |||| |||||||||| ||||    
T  48773590 ttattttggtgtttggggagttaatagaatttaagagaatttatggggagtttagtg 48773646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 140
Target Start/End: Original strand, 54090711 - 54090778
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggg 140  Q
    |||||||| ||||||||||||||||| |||||| || |||| |||||||||||||| | ||||||||||    
T  54090711 ttattttgatgtttggggagttaataaaatttaatagaatttatggggagttaagt-ataataaagggg 54090778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 166
Target Start/End: Complemental strand, 16834406 - 16834313
Alignment:
Q  72 ttattttggtgtttggggagtta-atagaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaa 166  Q
    ||||||||| |||||||||||||  ||  ||||| || ||||||  ||||||||| ||||||||||||||||||||| |||||||||||| |||||    
T  16834406 ttattttggagtttggggagttatttaatatttaatagaattaa-agggagttaaatgaaaataaagggggttaagt-aatgggaagttaagaaaa 16834313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 27033823 - 27033882
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaa 131  Q
    ||||||||||||||||||  ||||||||| |||| | |||| ||||||||||||||||||    
T  27033823 ttattttggtgtttgggggattaatagaagttataagaatttatggggagttaagtgaaa 27033882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 11963161 - 11963214
Alignment:
Q  75 ttttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtg 128  Q
    |||||| |||||||||||||||| ||||||||| ||||||  ||||||||||||    
T  11963161 ttttggagtttggggagttaatataatttattagaattaagagggagttaagtg 11963214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 197
Target Start/End: Complemental strand, 12275499 - 12275374
Alignment:
Q  72 ttattttggtgtttggggagttaat-agaatttattaaaattaatggggagttaagtgaaaataaagggg-gttaagtaaatgggaagttaggaaaa-ga 168  Q
    ||||||||| | ||||||||||||| |||| ||| || |||||| |||||||||| ||||| |||||||| |||| ||||  ||  ||||||||||| ||    
T  12275499 ttattttggaggttggggagttaattagaaattaatagaattaagggggagttaaatgaaa-taaaggggagttatgtaacggg--agttaggaaaaaga 12275403  T
Q  169 aagaatcagaagcagttttacgtgaaaac 197  Q
    || | ||||||| ||||||||||||||||    
T  12275402 aacagtcagaagaagttttacgtgaaaac 12275374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 53871668 - 53871717
Alignment:
Q  117 gggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaa 166  Q
    ||||||||| ||||||||||||| |||||||||  |||||||||||||||    
T  53871668 gggagttaaatgaaaataaagggagttaagtaagagggaagttaggaaaa 53871717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 3552628 - 3552684
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtg 128  Q
    |||||||||||||||||||  |||||| | ||||||||| | |||||||||||||||    
T  3552628 ttattttggtgtttggggaaataataggagttattaaaaattatggggagttaagtg 3552684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 12270281 - 12270337
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtg 128  Q
    ||||||||||||||||||| ||||||| | |||||| || | |||||||||||||||    
T  12270281 ttattttggtgtttggggaattaataggagttattagaaattatggggagttaagtg 12270337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 10596637 - 10596687
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagt 122  Q
    ||||||||| ||||||||||||| | |||||||||| |||||| |||||||    
T  10596637 ttattttggagtttggggagttattggaatttattagaattaagggggagt 10596687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 21150459 - 21150520
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaata 134  Q
    |||||||||||||| ||||  ||||||||||||||| |||| ||| ||||||||||| |||||    
T  21150459 ttattttggtgtttagggaaataatagaatttattagaatt-atgaggagttaagtgtaaata 21150520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 6926592 - 6926647
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtg 128  Q
    ||||||| |||||| |||| |||||||||||||||| ||||||  ||||||||||||    
T  6926592 ttattttagtgtttagggaattaatagaatttattagaattaa-agggagttaagtg 6926647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 23825780 - 23825836
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtg 128  Q
    |||||||||||||||||||  |||||| | |||||| || | |||||||||||||||    
T  23825780 ttattttggtgtttggggaaataataggagttattagaaatcatggggagttaagtg 23825836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 43723054 - 43723126
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggggtta 144  Q
    |||||||||||||||||||  |||||| | |||||| || | ||||||||||||||  || ||||||| ||||    
T  43723054 ttattttggtgtttggggaaataataggagttattagaagttatggggagttaagtataattaaagggagtta 43723126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 72 - 164
Target Start/End: Complemental strand, 27346855 - 27346763
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaa 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||  |||||||||||||    
T  27346855 ttattttggtgtttggggagttaatagaatttattaaaattaatgggaagttaagtgaaaatatagggagttaagtaagagggaagttaggaa 27346763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 72 - 164
Target Start/End: Complemental strand, 27364490 - 27364398
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaa 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||  |||||||||||||    
T  27364490 ttattttggtgtttggggagttaatagaatttattaaaattaatgggtagttaagtgaaaatatagggagttaagtaagagggaagttaggaa 27364398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 72 - 198
Target Start/End: Complemental strand, 6589263 - 6589137
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaaag 171  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||  ||||||| ||||||| | |     
T  6589263 ttattttggtgttaggggagttaatagaatttattaaaattaatggggagttaaatgaaaataaagggagttaagtaagagggaagtaaggaaaataga- 6589165  T
Q  172 aatcagaagcag-ttttacgtgaaaacc 198  Q
      |||||||||| |||||||||||||||    
T  6589164 tgtcagaagcagtttttacgtgaaaacc 6589137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 72 - 195
Target Start/End: Original strand, 16886233 - 16886356
Alignment:
Q  72 ttattttggtgtttggggagttaataga-atttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaaa 170  Q
    ||||||||| ||||||||||||| |  | |||||||||| |||||||||||||||||||||||| |||| ||||||| ||| ||||||||||||||||||    
T  16886233 ttattttggagtttggggagttatttaatatttattaaagttaatggggagttaagtgaaaatatagggagttaagt-aataggaagttaggaaaagaaa 16886331  T
Q  171 gaatcagaagcagttttacgtgaaa 195  Q
    ||||||||| | |||||||||||||    
T  16886332 gaatcagaaactgttttacgtgaaa 16886356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 72 - 166
Target Start/End: Complemental strand, 19297711 - 19297618
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaa 166  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||  ||||||||||||||    
T  19297711 ttattttggagtttggggagttaatagaatttattaaaattaatggagagttaagtgaaaataaagggagttaagt-aagaggaagttaggaaaa 19297618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 72 - 195
Target Start/End: Original strand, 14735755 - 14735878
Alignment:
Q  72 ttattttggtgtttggggagttaataga-atttattaaaattaatggggagttaagtgaaaataa-agggggttaagtaaatgggaagttaggaaaagaa 169  Q
    ||||||||| ||||||||||||| |  | | ||||||||||| |||||||| ||| || |||||  |||| ||||||||| |||||||||||||||||||    
T  14735755 ttattttggagtttggggagttatttaataattattaaaatttatggggagctaa-tggaaatattagggagttaagtaa-tgggaagttaggaaaagaa 14735852  T
Q  170 agaatcagaagcagttttacgtgaaa 195  Q
    ||||||||||||||||||||||||||    
T  14735853 agaatcagaagcagttttacgtgaaa 14735878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 72 - 168
Target Start/End: Complemental strand, 35542190 - 35542094
Alignment:
Q  72 ttattttggtgtttggggagttaataga-atttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaaga 168  Q
    ||||||||| ||||||||||||| |  | |||||||||| |||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||    
T  35542190 ttattttggagtttggggagttatttaatatttattaaagttaatggggagttaagtgaaaatatagggagttaagt-aatgggaagttaggaaaaga 35542094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 72 - 166
Target Start/End: Complemental strand, 29329389 - 29329296
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggg-gttaagtaaatgggaagttaggaaaa 166  Q
    |||||||||||||||||||  |||||||| |||||| |||| |||||||||||||||| |||||||||| ||||||| ||||||||||||||||||    
T  29329389 ttattttggtgtttggggaaataatagaagttattagaatt-atggggagttaagtgataataaaggggagttaagt-aatgggaagttaggaaaa 29329296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 72 - 197
Target Start/End: Original strand, 44474501 - 44474624
Alignment:
Q  72 ttattttggtgtttggggagttaat-agaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaaa 170  Q
    ||||||||| ||||||||| ||||| || ||||| || |||||| |||||||||| ||||||||| ||| ||||||||| |||||||||||||||||| |    
T  44474501 ttattttggagtttggggaattaattaggatttaatagaattaagggggagttaaatgaaaataaggggagttaagtaa-tgggaagttaggaaaagaga 44474599  T
Q  171 gaatcagaagcagttttacgtgaaaac 197  Q
     | |||||||||| |||||||||||||    
T  44474600 -agtcagaagcag-tttacgtgaaaac 44474624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 161
Target Start/End: Original strand, 3223606 - 3223693
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttag 161  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||  |||| || |||| ||||| ||||||||| |||||||||||    
T  3223606 ttattttggtgtttggggagttaatagaaattattaaaattaaagggg-tttaaatg-aaatgaagggagttaagtaagtgggaagttag 3223693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 72 - 140
Target Start/End: Original strand, 11391543 - 11391610
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggg 140  Q
    ||||||||||||||||||||||||||||||||| || |||| |||||||||||||| | ||||||||||    
T  11391543 ttattttggtgtttggggagttaatagaatttaatagaatttatggggagttaagt-ataataaagggg 11391610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 72 - 131
Target Start/End: Complemental strand, 43688581 - 43688523
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaa 131  Q
    |||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||    
T  43688581 ttattttggtgtttggggagttaatagaatttattagaatt-ttggggagttaagtgaaa 43688523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 166
Target Start/End: Complemental strand, 27891069 - 27890981
Alignment:
Q  76 tttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaa 166  Q
    ||||||||||| ||||||| ||||| |||||| ||||||  ||||||||| |||||||||| || ||||||| ||||||||||||||||||    
T  27891069 tttggtgtttgaggagttattagaagttattagaattaa-agggagttaaatgaaaataaatggagttaagt-aatgggaagttaggaaaa 27890981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 166
Target Start/End: Complemental strand, 27897406 - 27897314
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaa 166  Q
    ||||||||||||||| ||||||| ||||| |||||| ||||||  ||||||||| |||||||||| || ||||||| ||| ||||||||||||||    
T  27897406 ttattttggtgtttgtggagttattagaagttattagaattaa-agggagttaaatgaaaataaatggagttaagt-aattggaagttaggaaaa 27897314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 166
Target Start/End: Complemental strand, 27903308 - 27903220
Alignment:
Q  76 tttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaa 166  Q
    ||||||||||| ||||||| ||||| |||||| ||||||  ||||||||| |||||||||| || ||||||| ||||||||||||||||||    
T  27903308 tttggtgtttgaggagttattagaagttattagaattaa-agggagttaaatgaaaataaatggagttaagt-aatgggaagttaggaaaa 27903220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 166
Target Start/End: Complemental strand, 27949727 - 27949639
Alignment:
Q  76 tttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaa 166  Q
    ||||||||||| ||||||| ||||| |||||| ||||||  ||||||||| |||||||||| || ||||||| ||||||||||||||||||    
T  27949727 tttggtgtttgaggagttattagaagttattagaattaa-agggagttaaatgaaaataaatggagttaagt-aatgggaagttaggaaaa 27949639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 167
Target Start/End: Original strand, 29298012 - 29298106
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggg-gttaagtaaatgggaagttaggaaaag 167  Q
    ||||||||||||||||||| ||||||||| |||||| |||| || |||||| || || ||||||||||| ||||||| | |||||||||||||||||    
T  29298012 ttattttggtgtttggggaattaatagaagttattagaatttatagggagtaaaatg-aaataaaggggagttaagt-agtgggaagttaggaaaag 29298106  T

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Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 167
Target Start/End: Original strand, 29304567 - 29304661
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggg-gttaagtaaatgggaagttaggaaaag 167  Q
    ||||||||||||||||||| ||||||||| |||||| |||| || |||||| || || ||||||||||| ||||||| | |||||||||||||||||    
T  29304567 ttattttggtgtttggggaattaatagaagttattagaatttatagggagtaaaatg-aaataaaggggagttaagt-agtgggaagttaggaaaag 29304661  T

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Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 166
Target Start/End: Complemental strand, 12304388 - 12304293
Alignment:
Q  72 ttattttggtgtttggggagttaataga-atttattaaaattaatggggagttaagtgaaaataa-agggggttaagtaaatgggaagttaggaaaa 166  Q
    ||||||||| ||||||||||||| |  | |||||||||||||||||||||| ||| || |||||| |||| |||||||||  |||||||||||||||    
T  12304388 ttattttggagtttggggagttatttaatatttattaaaattaatggggagctaa-tggaaataatagggagttaagtaagagggaagttaggaaaa 12304293  T

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Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 23118372 - 23118317
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtg 128  Q
    |||||||||||||| |||| |||||||||||||||||||||||  ||||||||||||    
T  23118372 ttattttggtgttttgggaattaatagaatttattaaaattaa-agggagttaagtg 23118317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 25700550 - 25700606
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtg 128  Q
    ||||||||||||||||||||||||||||||||| || |||| |||||| ||| ||||    
T  25700550 ttattttggtgtttggggagttaatagaatttaatagaatttatggggggtttagtg 25700606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 6603229 - 6603166
Alignment:
Q  72 ttattttggtgtttggggagttaataga-atttattaaaattaatggggagttaagtgaaaata 134  Q
    ||||||||| ||||||||||||| |  | |||||||||| ||||||||||||||||||||||||    
T  6603229 ttattttggagtttggggagttatttaatatttattaaagttaatggggagttaagtgaaaata 6603166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 6610056 - 6609993
Alignment:
Q  72 ttattttggtgtttggggagttaataga-atttattaaaattaatggggagttaagtgaaaata 134  Q
    ||||||||| ||||||||||||| |  | |||||||||| ||||||||||||||||||||||||    
T  6610056 ttattttggagtttggggagttatttaatatttattaaagttaatggggagttaagtgaaaata 6609993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 6678682 - 6678619
Alignment:
Q  72 ttattttggtgtttggggagttaataga-atttattaaaattaatggggagttaagtgaaaata 134  Q
    ||||||||| ||||||||||||| |  | |||||||||| ||||||||||||||||||||||||    
T  6678682 ttattttggagtttggggagttatttaatatttattaaagttaatggggagttaagtgaaaata 6678619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 10947543 - 10947595
Alignment:
Q  75 ttttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtg 128  Q
    ||||||||||| |||| |||||||||||||||||||||||  ||||||||||||    
T  10947543 ttttggtgttttgggaattaatagaatttattaaaattaa-agggagttaagtg 10947595  T

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Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 10955625 - 10955677
Alignment:
Q  75 ttttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtg 128  Q
    ||||||||||| |||| |||||||||||||||||||||||  ||||||||||||    
T  10955625 ttttggtgttttgggaattaatagaatttattaaaattaa-agggagttaagtg 10955677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 168
Target Start/End: Original strand, 16265803 - 16265899
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaata-aagggggttaagtaaatgggaagttaggaaaaga 168  Q
    ||||||||||||| ||||  ||||||| | ||| || || | ||||||||||||||||||||| ||||| ||||| | |||||||||||| |||||||    
T  16265803 ttattttggtgttcgggggattaataggagttaatagaaattatggggagttaagtgaaaatagaagggagttaa-ttaatgggaagttaagaaaaga 16265899  T

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Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 168
Target Start/End: Original strand, 4519666 - 4519763
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaata-aagggggtt--aagtaaatgggaagttaggaaaaga 168  Q
    |||||||||||||||||||  |||||| | |||||| || | |||||||||||| |||||||| ||||| |||  |||| ||||||||||||||||||||    
T  4519666 ttattttggtgtttggggaaataataggagttattagaagttatggggagttaa-tgaaaatagaagggagttacaagt-aatgggaagttaggaaaaga 4519763  T

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Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 26484953 - 26485009
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtg 128  Q
    ||||||||||||||||||||||||||||| ||| || || | |||| ||||||||||    
T  26484953 ttattttggtgtttggggagttaatagaagttaatagaaattatggagagttaagtg 26485009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 31417628 - 31417687
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaa 131  Q
    ||||||||| ||||||||||||| |||||||||||| || ||| ||||||| || |||||    
T  31417628 ttattttggagtttggggagttattagaatttattagaactaagggggagtaaaatgaaa 31417687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 191
Target Start/End: Complemental strand, 21931951 - 21931835
Alignment:
Q  72 ttattttggtgtttggggagttaat-agaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaaa 170  Q
    ||||||||| ||||||||| ||||| |||||| || | ||||||  ||||||||||||||| ||||||| ||||||||  | || ||||||||||||| |    
T  21931951 ttattttggagtttggggatttaattagaattaat-agaattaagagggagttaagtgaaa-taaagggagttaagta--ttgggagttaggaaaagaga 21931856  T
Q  171 gaatcagaagcagttttacgt 191  Q
     | ||| ||||||||| ||||    
T  21931855 aagtcaaaagcagtttcacgt 21931835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 3698928 - 3698872
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtg 128  Q
    ||||||||||||||||||| ||||||| |  ||||| || | |||||||||||||||    
T  3698928 ttattttggtgtttggggaattaataggagctattagaaattatggggagttaagtg 3698872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 166
Target Start/End: Original strand, 14745453 - 14745548
Alignment:
Q  72 ttattttggtgtttggggagttaataga-atttattaaaattaatggggagttaagtgaaaataa-agggggttaagtaaatgggaagttaggaaaa 166  Q
    ||||||||| ||||||||||||| |  | |||||||||| || |||||||| ||| || |||||| |||| |||||||||  |||||||||||||||    
T  14745453 ttattttggagtttggggagttattgaacatttattaaagttgatggggagctaa-tggaaataatagggagttaagtaagagggaagttaggaaaa 14745548  T

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Target: scaffold0022 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 72 - 169
Target Start/End: Complemental strand, 105485 - 105388
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaata-aagggggttaagtaaatgggaagttaggaaaagaa 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| | |||||||||||||||||||||    
T  105485 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaaatgaaaatagaagggagttaa-ttaatgggaagttaggaaaagaa 105388  T

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Target: scaffold0113 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 72 - 168
Target Start/End: Complemental strand, 16309 - 16212
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggg-gttaagtaaatgggaagttaggaaaaga 168  Q
    ||||||||||||||||||||||||||||| |||||| || | |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  16309 ttattttggtgtttggggagttaatagaagttattagaaattatggggagttaaatgaaaataaaggggagttaagtaaatgggaagttaggaaaaga 16212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 72 - 168
Target Start/End: Complemental strand, 20407 - 20310
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggg-gttaagtaaatgggaagttaggaaaaga 168  Q
    ||||||||||||||||||||||||||||| |||||| || | |||||||||||| |||||||||||||| |||||||||||| ||||||| |||||||    
T  20407 ttattttggtgtttggggagttaatagaagttattagaaattatggggagttaaatgaaaataaaggggagttaagtaaatgagaagttaagaaaaga 20310  T

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Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 72 - 166
Target Start/End: Complemental strand, 12462710 - 12462615
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggg-gttaagtaaatgggaagttaggaaaa 166  Q
    ||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||| ||  ||||||| ||||||||||||||||||||||||||    
T  12462710 ttattttggtgtttggggagttaatagaagttattagaatttatggggagttaagtgtaataaaaggggagttaagtaaatgggaagttaggaaaa 12462615  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 72 - 166
Target Start/End: Complemental strand, 12455254 - 12455159
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggg-gttaagtaaatgggaagttaggaaaa 166  Q
    ||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||| ||  ||||||| |||||| |||||||||||||||||||    
T  12455254 ttattttggtgtttggggagttaatagaagttattagaatttatggggagttaagtgtaataaaaggggagttaagaaaatgggaagttaggaaaa 12455159  T

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Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 72 - 166
Target Start/End: Complemental strand, 21758485 - 21758392
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaa 166  Q
    |||||||| |||||||||||||||||||||||| |||||||||  ||||||||| ||||||||||||| |||||||||  |||||||||||||||    
T  21758485 ttattttgctgtttggggagttaatagaatttaataaaattaa-agggagttaaatgaaaataaagggagttaagtaagagggaagttaggaaaa 21758392  T

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Target: chr7; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 102 - 191
Target Start/End: Complemental strand, 25159596 - 25159509
Alignment:
Q  102 ttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaaagaatcagaagcagttttacgt 191  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||| || |||||||||| |||||    
T  25159596 ttattaaaattaatggggagttaagtgaaaatatagggagttaagt-aatgggaagttaggaaaagaaag-attagaagcagttgtacgt 25159509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 72 - 168
Target Start/End: Complemental strand, 23522174 - 23522079
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaaga 168  Q
    ||||||||||||||||||| ||||||||| |||||| |||| |||||||| ||| ||||||||||||| ||||||| |||||||||||| |||||||    
T  23522174 ttattttggtgtttggggaattaatagaagttattagaatttatggggagataaatgaaaataaagggagttaagt-aatgggaagttaagaaaaga 23522079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 72 - 166
Target Start/End: Complemental strand, 19463869 - 19463774
Alignment:
Q  72 ttattttggtgtttggggagttaataga-atttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaa 166  Q
    ||||||||| |||||||||||||||  | ||||| || |||||| |||||||||| ||||||||| ||| ||||||||||||||||||||||||||    
T  19463869 ttattttggagtttggggagttaattaatatttaatagaattaagggggagttaaatgaaaataaggggagttaagtaaatgggaagttaggaaaa 19463774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 72 - 191
Target Start/End: Complemental strand, 32628600 - 32628483
Alignment:
Q  72 ttattttggtgtttggggagttaataga-atttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaaa 170  Q
    ||||||||| ||||||||||||| |  | | |||||||||||||||||||| ||| |||||||| |||| ||||||||| ||||||||||||||||||||    
T  32628600 ttattttggagtttggggagttatttaataattattaaaattaatggggagctaa-tgaaaatatagggagttaagtaa-tgggaagttaggaaaagaaa 32628503  T
Q  171 gaatcagaagcagttttacgt 191  Q
    | || |||||||||| |||||    
T  32628502 g-attagaagcagttgtacgt 32628483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 72 - 168
Target Start/End: Original strand, 20018649 - 20018747
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaat-aaagggggtt--aagtaaatgggaagttaggaaaaga 168  Q
    ||||||||||||||||||| ||||||||| ||| || || | |||||||||||||||||||| |||||| |||  |||| ||||||||||||||||||||    
T  20018649 ttattttggtgtttggggaattaatagaagttaatagaaattatggggagttaagtgaaaataaaagggagttacaagt-aatgggaagttaggaaaaga 20018747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 30270762 - 30270818
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtg 128  Q
    |||||||||||||||||||||||||| ||||||||| ||||||  ||||||||||||    
T  30270762 ttattttggtgtttggggagttaatataatttattagaattaagagggagttaagtg 30270818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 168
Target Start/End: Complemental strand, 15839797 - 15839701
Alignment:
Q  72 ttattttggtgtttggggagttaataga-atttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaaga 168  Q
    ||||||||| ||||||| ||||| |  | ||||| || |||||| |||||| ||| ||||||||||||| ||||||||||||||||||| ||||||||    
T  15839797 ttattttggagtttgggaagttatttaatatttaatagaattaa-ggggagctaaatgaaaataaagggagttaagtaaatgggaagttgggaaaaga 15839701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 13962981 - 13963036
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtg 128  Q
    ||||||||||||||| ||| |||||||||||||||||||||||  ||||||||||||    
T  13962981 ttattttggtgtttgaggaattaatagaatttattaaaattaa-agggagttaagtg 13963036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 37288659 - 37288603
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtg 128  Q
    ||||||||||||||||||||||||||||| ||| || || | |||||||||||||||    
T  37288659 ttattttggtgtttggggagttaatagaagttaatagaaattatggggagttaagtg 37288603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 3329025 - 3328975
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagt 122  Q
    ||||||||| ||||||||||||| |||||||||||| |||||| |||||||    
T  3329025 ttattttggagtttggggagttattagaatttattagaattaagggggagt 3328975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 168
Target Start/End: Original strand, 16842849 - 16842944
Alignment:
Q  72 ttattttggtgtttggggagttaat-agaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaaga 168  Q
    |||||||||  ||| |||||||||| ||||||||||| |||| ||||||||||||||| ||||| |||| |||||| ||| ||| ||||| |||||||    
T  16842849 ttattttgggattttgggagttaattagaatttattagaatttatggggagttaagtg-aaatatagggagttaagcaaa-ggggagttaagaaaaga 16842944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 46175469 - 46175420
Alignment:
Q  117 gggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaa 166  Q
    ||||||||| ||||||||||||| |||||||||  |||||||||||||||    
T  46175469 gggagttaaatgaaaataaagggagttaagtaagagggaagttaggaaaa 46175420  T

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Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 15632553 - 15632498
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtg 128  Q
    |||||||||||||| || | |||||||||||||||||||||||  ||||||||||||    
T  15632553 ttattttggtgttttggaaattaatagaatttattaaaattaa-agggagttaagtg 15632498  T

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Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 27566153 - 27566097
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtg 128  Q
    ||||||||||||||||||| ||||||| | |||||| || | |||||||||||||||    
T  27566153 ttattttggtgtttggggaattaataggagttattagaaattatggggagttaagtg 27566097  T

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Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 168
Target Start/End: Complemental strand, 42059748 - 42059651
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaata-aagggggtt--aagtaaatgggaagttaggaaaaga 168  Q
    |||||||||||||||||||  |||||| | |||||| || | |||||||||||| |||||||| ||||| |||  |||| ||||||||||||||||||||    
T  42059748 ttattttggtgtttggggaaataataggagttattagaagttatggggagttaa-tgaaaatagaagggagttacaagt-aatgggaagttaggaaaaga 42059651  T

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Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 107
Target Start/End: Original strand, 26288736 - 26288771
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttatta 107  Q
    ||||||||| ||||||||||||||||||||||||||    
T  26288736 ttattttggagtttggggagttaatagaatttatta 26288771  T

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Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 37243241 - 37243300
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaa 131  Q
    ||||||||| ||||||||||||| |||||||||||| || ||| ||||||| || |||||    
T  37243241 ttattttggagtttggggagttattagaatttattagaactaagggggagtaaaatgaaa 37243300  T

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Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 169
Target Start/End: Complemental strand, 49159963 - 49159864
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaata-aagggggtt-aagtaaatgggaagttaggaaaagaa 169  Q
    |||||||||||| ||| |||||||||||| ||| |  || | |||||||||||| |||||||| ||||| ||| || | |||||||||||| ||||||||    
T  49159963 ttattttggtgtgtggcgagttaatagaagttaatggaaattatggggagttaaatgaaaatagaagggagttaaaattaatgggaagttaagaaaagaa 49159864  T

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Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 106
Target Start/End: Original strand, 2025199 - 2025233
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttatt 106  Q
    ||||||||||||||||||| |||||||||||||||    
T  2025199 ttattttggtgtttggggaattaatagaatttatt 2025233  T

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Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 197
Target Start/End: Original strand, 11390832 - 11390955
Alignment:
Q  72 ttattttggtgtttggggagttaat-agaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaaa 170  Q
    ||||||||  || |||||| ||||| || ||||| || |||||| |||||||||| | ||||||| ||| |||| |||| |||||||||||||||||| |    
T  11390832 ttattttgcagtgtggggaattaattaggatttaatagaattaagggggagttaaataaaaataaggggagttatgtaa-tgggaagttaggaaaagaga 11390930  T
Q  171 gaatcagaagcagttttacgtgaaaac 197  Q
     |  ||||||||| |||||||||||||    
T  11390931 -aggcagaagcag-tttacgtgaaaac 11390955  T

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Target: scaffold0103 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 72 - 167
Target Start/End: Complemental strand, 20782 - 20687
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtg-aaaataaagggggttaagtaaatgggaagttaggaaaag 167  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  || ||||||| |||||||  ||||||||||||||||||    
T  20782 ttattttggtgtttggggagttaatagaatttattagaattaatggggagttaagtgttaattaaagggagttaagt-gatgggaagttaggaaaag 20687  T

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Target: scaffold0103; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 72 - 167
Target Start/End: Original strand, 22802 - 22897
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtg-aaaataaagggggttaagtaaatgggaagttaggaaaag 167  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  || ||||||| |||||||  ||||||||||||||||||    
T  22802 ttattttggtgtttggggagttaatagaatttattagaattaatggggagttaagtgttaattaaagggagttaagt-gatgggaagttaggaaaag 22897  T

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Target: scaffold0037 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 76 - 166
Target Start/End: Original strand, 100634 - 100726
Alignment:
Q  76 tttggtgtttggggagttaatagaatttattaaaattaa-tggggagttaagtgaaaataaagggg-gttaagtaaatgggaagttaggaaaa 166  Q
    |||||||||||||||||||||||||||||||| ||||||  |||||||||  |||||||||||||| ||||||||||||||||||||||||||    
T  100634 tttggtgtttggggagttaatagaatttattagaattaaggggggagttatatgaaaataaaggggagttaagtaaatgggaagttaggaaaa 100726  T

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Target: scaffold0320 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 72 - 168
Target Start/End: Complemental strand, 2088 - 1993
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaaga 168  Q
    ||||||||||||||||||| ||||||||| ||| || || | ||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||    
T  2088 ttattttggtgtttggggaattaatagaagttaatagaagttatggggagttaagtgaaaatatagggagttaagt-aatgggaagttaggaaaaga 1993  T

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Target: scaffold0001 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 72 - 168
Target Start/End: Complemental strand, 180182 - 180087
Alignment:
Q  72 ttattttggtgtttggggagttaat-agaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaaga 168  Q
    ||||||||| | ||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||| |||||||||| ||| |||||||||||||    
T  180182 ttattttgggggttggggagttaattagaatttattagaattaatggggagttaagtg-aaataaagggagttaagtaaa-gggcagttaggaaaaga 180087  T

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Target: scaffold0155 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 72 - 131
Target Start/End: Complemental strand, 32018 - 31959
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaa 131  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  32018 ttattttggtgtttggggagttaatagaatttattagaatttatggggagttaagtgaaa 31959  T

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Target: scaffold0003 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 72 - 166
Target Start/End: Original strand, 160464 - 160556
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaa 166  Q
    ||||||| ||||||||||||||| ||||| |||||| ||||||  ||||||||| ||||||||||||| ||||||| ||||||||||||||||||    
T  160464 ttatttttgtgtttggggagttattagaagttattagaattaa-agggagttaaatgaaaataaagggagttaagt-aatgggaagttaggaaaa 160556  T

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Target: scaffold0089 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 102 - 191
Target Start/End: Original strand, 17522 - 17609
Alignment:
Q  102 ttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaaagaatcagaagcagttttacgt 191  Q
    |||||||| ||||||||||||||| |||||||| |||| ||||||| ||||||||||||||||||||||| || |||||||||| |||||    
T  17522 ttattaaagttaatggggagttaaatgaaaatatagggagttaagt-aatgggaagttaggaaaagaaag-attagaagcagttgtacgt 17609  T

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Target: scaffold1128 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold1128
Description:

Target: scaffold1128; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 72 - 197
Target Start/End: Complemental strand, 750 - 627
Alignment:
Q  72 ttattttggtgtttggggagttaat-agaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaaa 170  Q
    |||||||||  |||||||| ||||| || ||||| || |||||| |||||||||| ||||||||| ||| ||||||||| |||||||||||||||||| |    
T  750 ttattttggattttggggaattaattaggatttaatagaattaagggggagttaaatgaaaataaggggagttaagtaa-tgggaagttaggaaaagaga 652  T
Q  171 gaatcagaagcagttttacgtgaaaac 197  Q
     | |||||||||| |||||||||||||    
T  651 -agtcagaagcag-tttacgtgaaaac 627  T

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Target: scaffold0815 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 72 - 197
Target Start/End: Complemental strand, 1705 - 1582
Alignment:
Q  72 ttattttggtgtttggggagttaat-agaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaaa 170  Q
    ||||||||| ||||||||| ||||| || ||||| || ||| || |||||||||| ||||||||| ||| ||||||||| |||||||||||||||||| |    
T  1705 ttattttggagtttggggaattaattaggatttaatagaatcaagggggagttaaatgaaaataaggggagttaagtaa-tgggaagttaggaaaagaga 1607  T
Q  171 gaatcagaagcagttttacgtgaaaac 197  Q
     | |||||||||| |||||||||||||    
T  1606 -agtcagaagcag-tttacgtgaaaac 1582  T

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Target: scaffold0191 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 10947 - 10891
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtg 128  Q
    ||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||    
T  10947 ttattttggtgtttggggagttaatagaattaattagaatttatggggagttaagtg 10891  T

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Target: scaffold0009 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 72 - 131
Target Start/End: Complemental strand, 248205 - 248145
Alignment:
Q  72 ttattttggtgtttggggagttaat-agaatttattaaaattaatggggagttaagtgaaa 131  Q
    ||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  248205 ttattttcgagtttggggagttaattagaatttattaaaattaatggggagttaagtgaaa 248145  T

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Target: scaffold0009; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 72 - 131
Target Start/End: Complemental strand, 254717 - 254657
Alignment:
Q  72 ttattttggtgtttggggagttaat-agaatttattaaaattaatggggagttaagtgaaa 131  Q
    ||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  254717 ttattttggagtttggggagttaattagaatttattagaattaatggggagttaagtgaaa 254657  T

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Target: scaffold0310 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 72 - 168
Target Start/End: Complemental strand, 17263 - 17168
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggg-gttaagtaaatgggaagttaggaaaaga 168  Q
    |||||||||| |||||||   |||||||| |||||| ||||| ||||||||||||||| ||| |||||| ||||||||| ||||||||||||||||||    
T  17263 ttattttggtatttgggggaataatagaaattattagaatta-tggggagttaagtgataattaaggggagttaagtaa-tgggaagttaggaaaaga 17168  T

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Target: scaffold0007 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 195
Target Start/End: Original strand, 206672 - 206794
Alignment:
Q  72 ttattttggtgtttggggagttaat-agaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaagaaa 170  Q
    ||||||||| | ||||||| ||||| |||| ||| || |||||| |||||||||| ||||| ||||||||  ||||||  |||| |||||||||||||||    
T  206672 ttattttggaggttggggatttaattagaaattaatagaattaagggggagttaaatgaaa-taaaggggagtaagtat-tggggagttaggaaaagaaa 206769  T
Q  171 gaatcagaagcagttttacgtgaaa 195  Q
     | ||||||||| ||||||||||||    
T  206770 cagtcagaagcaattttacgtgaaa 206794  T

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Target: scaffold0190 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 72 - 166
Target Start/End: Original strand, 19088 - 19183
Alignment:
Q  72 ttattttggtgtttggggagttaataga-atttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaa 166  Q
    ||||||||| |||||||||||||||  | ||||| |  |||||| ||||||| |  ||||||||| ||| ||||||||||||||||||||||||||    
T  19088 ttattttggagtttggggagttaattaatatttaattgaattaagggggagtgatatgaaaataaggggagttaagtaaatgggaagttaggaaaa 19183  T

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Target: scaffold0068 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 50821 - 50877
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtg 128  Q
    ||||||||||||||||||||||||||||||||| || ||||  ||||||||| ||||    
T  50821 ttattttggtgtttggggagttaatagaatttaatagaatttgtggggagtttagtg 50877  T

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Target: scaffold0068; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 64269 - 64325
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtg 128  Q
    ||||||||||||||||||||||||||||||||| || ||||  ||||||||| ||||    
T  64269 ttattttggtgtttggggagttaatagaatttaatagaatttgtggggagtttagtg 64325  T

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Target: scaffold0214 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 166
Target Start/End: Original strand, 14187 - 14281
Alignment:
Q  72 ttattttggtgtttggggagtta-atagaatttattaaaattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaa 166  Q
    ||||||||| |||||||||||||  ||  ||||| || ||||||  ||||||||| ||||||||||||| |||||||||  |||||||||||||||    
T  14187 ttattttggagtttggggagttatttaatatttaatagaattaa-agggagttaaatgaaaataaagggagttaagtaagagggaagttaggaaaa 14281  T

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Target: scaffold0149 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 195
Target Start/End: Original strand, 13943 - 14028
Alignment:
Q  109 aattaatggggagttaagtgaaaataaagggg-gttaagtaaatgggaagttaggaaaagaaagaatcagaagcagttttacgtgaaa 195  Q
    |||||| |||||||||| ||||| |||||||| |||| |||  |||| ||||||||||||||| | ||||||||||||||||||||||    
T  13943 aattaagggggagttaaatgaaa-taaaggggagttatgtat-tggggagttaggaaaagaaacagtcagaagcagttttacgtgaaa 14028  T

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Target: scaffold0457 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0457
Description:

Target: scaffold0457; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 11192 - 11254
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaata 134  Q
    ||||||||||||||||||| ||||||||| |||||| || | ||| ||||||||||| |||||    
T  11192 ttattttggtgtttggggaattaatagaagttattagaaattatgaggagttaagtgtaaata 11254  T

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Target: scaffold0118 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 8359 - 8297
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaaata 134  Q
    ||||||||||||||||||| ||||||| | ||| || || | |||||||||||||||||||||    
T  8359 ttattttggtgtttggggaattaataggagttaatagaaattatggggagttaagtgaaaata 8297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0583 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0583
Description:

Target: scaffold0583; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 131
Target Start/End: Complemental strand, 716 - 657
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtgaaa 131  Q
    |||||||||  ||||||||||||||||||||||||| |||||   |||||| ||||||||    
T  716 ttattttggattttggggagttaatagaatttattagaattaggagggagtaaagtgaaa 657  T

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Target: scaffold0516 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 197
Target Start/End: Complemental strand, 7377 - 7254
Alignment:
Q  72 ttattttggtgtttggggagttaat-agaatttattaaaattaatggggagttaagtgaaaataaagggg-gttaagtaaatgggaagttaggaaaagaa 169  Q
    ||||||||| | ||||||||||||| || | ||| || |||||| ||||||| || ||||| |||||||| |||| ||||| |||| ||||||||||||     
T  7377 ttattttggaggttggggagttaattaggaattaatagaattaagggggagtaaa-tgaaa-taaaggggagttatgtaaagggga-gttaggaaaagag 7281  T
Q  170 agaatcagaagcagttttacgtgaaaac 197  Q
    | | ||||||||||||||||||||||||    
T  7280 a-agtcagaagcagttttacgtgaaaac 7254  T

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Target: scaffold0031 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 195
Target Start/End: Complemental strand, 122125 - 122039
Alignment:
Q  109 aattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaa-gaaagaatcagaagcagttttacgtgaaa 195  Q
    |||||| |||| ||||| |||||  |||||| ||||||||  |||| ||||||||||| |||| | ||||||||||||||||||||||    
T  122125 aattaagggggggttaaatgaaataaaagggagttaagtat-tggggagttaggaaaaagaaacagtcagaagcagttttacgtgaaa 122039  T

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Target: scaffold0031; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 195
Target Start/End: Complemental strand, 133001 - 132915
Alignment:
Q  109 aattaatggggagttaagtgaaaataaagggggttaagtaaatgggaagttaggaaaa-gaaagaatcagaagcagttttacgtgaaa 195  Q
    |||||| |||| ||||| |||||  |||||| ||||||||  |||| ||||||||||| |||| | ||||||||||||||||||||||    
T  133001 aattaagggggggttaaatgaaataaaagggagttaagtat-tggggagttaggaaaaagaaacagtcagaagcagttttacgtgaaa 132915  T

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Target: scaffold0034 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 14619 - 14669
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagt 122  Q
    ||||||||| ||||||||| ||| |||||||||||| |||||| |||||||    
T  14619 ttattttggagtttggggaattattagaatttattagaattaagggggagt 14669  T

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Target: scaffold0050 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 197
Target Start/End: Complemental strand, 14047 - 13922
Alignment:
Q  72 ttattttggtgtttggggagttaat-agaatttattaaaattaatggggagttaagtgaaaataaagggg-gttaagtaaatgggaagttaggaaaagaa 169  Q
    ||||||||| | ||||||| ||||| |||| ||| || ||||||  ||||||||| ||||| |||||||| |||| |||  | || ||||||||||||||    
T  14047 ttattttggaggttggggatttaattagaaattaatagaattaagagggagttaaatgaaa-taaaggggagttatgta--ttgggagttaggaaaagaa 13951  T
Q  170 agaatcagaa-gcagttttacgtgaaaac 197  Q
    | | |||||| ||||||||||||||||||    
T  13950 acagtcagaaagcagttttacgtgaaaac 13922  T

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Target: scaffold0019 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 84 - 168
Target Start/End: Complemental strand, 138256 - 138173
Alignment:
Q  84 ttggggagttaatagaatttattaaaattaatggggagttaagtgaaaataaagggg-gttaagtaaatgggaagttaggaaaaga 168  Q
    ||||||||| | |||||||||| | ||||||  |||||| || ||||| |||||||| ||||||||| ||||||||||||||||||    
T  138256 ttggggagtaattagaatttataagaattaagagggagtaaaatgaaa-taaaggggagttaagtaa-tgggaagttaggaaaaga 138173  T

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Target: scaffold0004 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 197
Target Start/End: Complemental strand, 117078 - 117037
Alignment:
Q  156 agttaggaaaagaaagaatcagaagcagttttacgtgaaaac 197  Q
    |||||||||||||||   ||||||||||||||||||||||||    
T  117078 agttaggaaaagaaaaggtcagaagcagttttacgtgaaaac 117037  T

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Target: scaffold0137 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 25270 - 25326
Alignment:
Q  72 ttattttggtgtttggggagttaatagaatttattaaaattaatggggagttaagtg 128  Q
    |||||||||||||||||||  |||||| | || |||||| | |||||||||||||||    
T  25270 ttattttggtgtttggggaaataataggagttgttaaaaattatggggagttaagtg 25326  T

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Target: scaffold0102 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 11261 - 11321
Alignment:
Q  72 ttattttggtgtttgggg-agttaatagaatttattaaaattaatggggagttaagtgaaa 131  Q
    |||||||||||||||||| ||||||||||| ||| || || | |||||||||||| |||||    
T  11261 ttattttggtgtttgggggagttaatagaagttaatagaaattatggggagttaaatgaaa 11321  T

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Target: scaffold0060 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 131
Target Start/End: Complemental strand, 42362 - 42315
Alignment:
Q  84 ttggggagttaat-agaatttattaaaattaatggggagttaagtgaaa 131  Q
    ||||||||||||| ||||||||||| ||||||| |||||||||||||||    
T  42362 ttggggagttaattagaatttattagaattaat-gggagttaagtgaaa 42315  T

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Target: scaffold0053 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 78960 - 79003
Alignment:
Q  151 tgggaagttaggaaaagaaagaatcagaagcagttttacgtgaaa 195  Q
    |||||||||||||||||||||  | ||||||||||||||||||||    
T  78960 tgggaagttaggaaaagaaag-gttagaagcagttttacgtgaaa 79003  T

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