View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_301 (Length: 218)
Name: NF8905A_low_301
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_301 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 26 - 195
Target Start/End: Original strand, 36698821 - 36698990
Alignment:
| Q |
26 |
atacttagggcgtatatttgaattttgttgttcaaataatacaactgattattaattagagcatcttgaagccagatggcttgcatattgtcttctcaat |
125 |
Q |
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| T |
36698821 |
atacttagggcgtatatttgaattttgttgttcaaataatacaactgattattaattagagcatcttgaagccagatggcttgcatattgtcttctcaat |
36698920 |
T |
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| Q |
126 |
aaagcaacgtgttgcatatattttgttggcaatttgagacgggtgatcatcaaagaagagatgagtgttt |
195 |
Q |
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| T |
36698921 |
aaagcaatgtgttgcatatattttgttggcaatttgagacgcgtgatcatcaaagaagagatgagtgttt |
36698990 |
T |
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Target: scaffold0009 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 38 - 195
Target Start/End: Original strand, 143777 - 143935
Alignment:
| Q |
38 |
tatatttgaattttgttgttcaaataatacaactgatt-attaattagagcatcttgaagccagatggcttgcatattgtcttctcaataaagcaacgtg |
136 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
143777 |
tatatttgtattttgttgttcaaataatacaactgatttattaattagagcattttgaagctagatggcttgcatattgtcttctcaatgaagcaacgtg |
143876 |
T |
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| Q |
137 |
ttgcatatattttgttggcaatttgagacgggtgatcatcaaagaagagatgagtgttt |
195 |
Q |
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| T |
143877 |
ttgcatatattttgttggcaatttgagaggggtgatcatcaaagaagagatgagtgttt |
143935 |
T |
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