View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_302 (Length: 218)
Name: NF8905A_low_302
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_302 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 2 - 199
Target Start/End: Complemental strand, 53467243 - 53467047
Alignment:
| Q |
2 |
cacattttcattcaaaatcataaggcattgggggcttatgcatcctctcacttatatattgctactttttcatctaatgttgaacttctacctcacactt |
101 |
Q |
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| T |
53467243 |
cacattttcattcaaaatcttaaggcattgggggcttatgcatcctctcacttatatattgctactttttcatctaatgttggacttctacctcacactt |
53467144 |
T |
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| Q |
102 |
gctacacaacaatctccctctcaagtgtgggtcatccatccattcatttgtgtatgcccccctcaaatggatgctttttatatatacttgcaacacca |
199 |
Q |
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| T |
53467143 |
gctacacaacaatctccctctcaagtgtgggtcatccatccattcatttgtgtatgc-cccctcaaattgatgctttttatatatacttgcaccacca |
53467047 |
T |
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Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 85 - 156
Target Start/End: Original strand, 45635976 - 45636047
Alignment:
| Q |
85 |
acttctacctcacacttgctacacaacaatctccctctcaagtgtgggtcatccatccattcatttgtgtat |
156 |
Q |
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| T |
45635976 |
acttctatctcacacttggtacacaacaatctccctctcaagtgtgagtcatccatccattcatttgggtat |
45636047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 13154520 - 13154560
Alignment:
| Q |
85 |
acttctacctcacacttgctacacaacaatctccctctcaa |
125 |
Q |
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| T |
13154520 |
acttctaactcatacttgctacacaacaatcttcctctcaa |
13154560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 42730342 - 42730284
Alignment:
| Q |
78 |
atgttgaacttctacctcacacttgctacacaacaatctccctctcaagtgtgggtcat |
136 |
Q |
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|||| ||||||||| |||| ||||||||||||||||||| || |||||||||| ||||| |
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| T |
42730342 |
atgtggaacttctaactcagacttgctacacaacaatcttcccctcaagtgtgagtcat |
42730284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 115
Target Start/End: Complemental strand, 28483780 - 28483750
Alignment:
| Q |
85 |
acttctacctcacacttgctacacaacaatc |
115 |
Q |
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| T |
28483780 |
acttctacctcacacttgctacacaacaatc |
28483750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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