View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8905A_low_303 (Length: 218)
Name: NF8905A_low_303
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_303 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 6 - 118
Target Start/End: Complemental strand, 6958805 - 6958693
Alignment:
| Q |
6 |
atatattgaattcaaagaatgtgctagctactgctcataaatttgtagactttgatttcaattagttttcagcataaaatttcaatctttaaaatgataa |
105 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6958805 |
atatattgaattcaaagaatatgctagctactgctcataaatttgtagactttgatttcaattagttttcagcataaaatttcaatctttaaaatgataa |
6958706 |
T |
|
| Q |
106 |
tatctacacgaac |
118 |
Q |
| |
|
||||||||||||| |
|
|
| T |
6958705 |
tatctacacgaac |
6958693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 99
Target Start/End: Original strand, 30575291 - 30575384
Alignment:
| Q |
6 |
atatattgaattcaaagaatgtgctagctactgctcataaatttgtagactttgatttcaattagttttcagcataaaatttcaatctttaaaa |
99 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30575291 |
atatattgaattcaaagaatatgctagctactgctcatgaatttgaagactttgatttcaattagttttcagcataaaacttcaatctttaaaa |
30575384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 99
Target Start/End: Original strand, 23007023 - 23007116
Alignment:
| Q |
6 |
atatattgaattcaaagaatgtgctagctactgctcataaatttgtagactttgatttcaattagttttcagcataaaatttcaatctttaaaa |
99 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||| |||||| |||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
23007023 |
atatattgaattcaaagaatatgcttgctactgctcatgaatttgaagactttgatttcaattagttttcggcataaaacttcaatctttaaaa |
23007116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 136 - 204
Target Start/End: Original strand, 41100904 - 41100972
Alignment:
| Q |
136 |
gtaaacttgctttcatataaattggcatttgaaaccaaactaagtccgactaacaatctcttcatatca |
204 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
41100904 |
gtaaacttgctttcatatcaattggcatttgaaaccaaactaagtccgactaactatctcttcatatca |
41100972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University