View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_309 (Length: 214)
Name: NF8905A_low_309
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_309 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 6880552 - 6880381
Alignment:
| Q |
18 |
catcaatatatgaagttgttactggtgctgcaaagaaacaagttaaggagaagtcttcagtttcaaaccacagtggcagcaaatccaagtccagctcgaa |
117 |
Q |
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| T |
6880552 |
catcaatatatgaagttgttactggtgctgcaaagaaacaagttaaggagaagtcttcagtttcaaaccacagtggcagcaaatccaagtccagctcgaa |
6880453 |
T |
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| Q |
118 |
agcggtaaataatatttttctgctctaacttatgcatgacaaaatatacatatattttttatacatacgtct |
189 |
Q |
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| T |
6880452 |
agcggtaaataatatttttctgctctaacttatgcatgacaaaatatacatatattttttatacatacgtct |
6880381 |
T |
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Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 28 - 130
Target Start/End: Original strand, 42660351 - 42660453
Alignment:
| Q |
28 |
tgaagttgttactggtgctgcaaagaaacaagttaaggagaagtcttcagtttcaaaccacagtggcagcaaatccaagtccagctcgaaagcggtaaat |
127 |
Q |
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||||||||||||||||||||||||||||||||| || |||||||||||||| |||||| |||||||||||||||| |||||||| || |||||||||||| |
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| T |
42660351 |
tgaagttgttactggtgctgcaaagaaacaagtcaaagagaagtcttcagtctcaaacaacagtggcagcaaatctaagtccagttctaaagcggtaaat |
42660450 |
T |
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| Q |
128 |
aat |
130 |
Q |
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||| |
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| T |
42660451 |
aat |
42660453 |
T |
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