View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8905A_low_310 (Length: 214)

Name: NF8905A_low_310
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8905A_low_310
NF8905A_low_310
[»] chr3 (5 HSPs)
chr3 (128-214)||(19216476-19216562)
chr3 (2-65)||(19216350-19216413)
chr3 (128-211)||(19259882-19259965)
chr3 (2-65)||(19259755-19259818)
chr3 (2-46)||(19174417-19174461)


Alignment Details
Target: chr3 (Bit Score: 71; Significance: 2e-32; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 128 - 214
Target Start/End: Original strand, 19216476 - 19216562
Alignment:
Q  128 caataatttgatacctcatcgagaattccctggttggtgatacagagaaaaacttttaggaagaaacaaacgatgaaaaagaaagag 214  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||  |||||||||||||||||||    
T  19216476 caataatttgatacctcatcgagaattccatggttggtgatacagagaaaaactgttaggaagaaatgaacgatgaaaaagaaagag 19216562  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 19216350 - 19216413
Alignment:
Q  2 cattcaaaagcattgatgttcctcatcttattactgtagtccctgcaacatagcaataccatag 65  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  19216350 cattcaaaagcattgatggtcctcatcttattactgtagtccctgcaacatagaaataccatag 19216413  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 128 - 211
Target Start/End: Original strand, 19259882 - 19259965
Alignment:
Q  128 caataatttgatacctcatcgagaattccctggttggtgatacagagaaaaacttttaggaagaaacaaacgatgaaaaagaaa 211  Q
    |||||||||||||||| |||||||||||| ||||||||||||||| |||||||| ||||||||||||  | |||||||||||||    
T  19259882 caataatttgataccttatcgagaattccatggttggtgatacagggaaaaactgttaggaagaaacggatgatgaaaaagaaa 19259965  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 19259755 - 19259818
Alignment:
Q  2 cattcaaaagcattgatgttcctcatcttattactgtagtccctgcaacatagcaataccatag 65  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||    
T  19259755 cattcaaaagcattgatggtcctcatcttattactgtagtccctgcaacatagaaatagcatag 19259818  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 19174417 - 19174461
Alignment:
Q  2 cattcaaaagcattgatgttcctcatcttattactgtagtccctg 46  Q
    |||||||||||||||||| |||||||||||  | |||||||||||    
T  19174417 cattcaaaagcattgatggtcctcatcttaaaagtgtagtccctg 19174461  T

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