View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_312 (Length: 212)
Name: NF8905A_low_312
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_312 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 4235930 - 4236138
Alignment:
| Q |
1 |
gcgacaaaatttataacaagtgctgccacattcactgttaattgaaattgaatgaatttttgaatgttgttgtaaacacatcttccccaatttataactg |
100 |
Q |
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| T |
4235930 |
gcgacaaaatttataacaagtgctgccacattcactgttaattgaaattgaatgaatttttgaatgttgttgtaaacacatcttccccaatttataactg |
4236029 |
T |
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| Q |
101 |
ttactatagatgcaaaattgtcatctaatataacaatatctgaactctcttttgctacttcagtaccttgaattcccattgaaagtccaatatcagcttc |
200 |
Q |
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| T |
4236030 |
ttacaatagatgcaaaattgtcatctaatataacaatatctgaactctcttttgctacttcagtaccttgaattcccattgaaagtccaatatcagcttc |
4236129 |
T |
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| Q |
201 |
tttcaatgc |
209 |
Q |
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| T |
4236130 |
tttcaatgc |
4236138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 146 - 209
Target Start/End: Complemental strand, 30441396 - 30441333
Alignment:
| Q |
146 |
tctcttttgctacttcagtaccttgaattcccattgaaagtccaatatcagcttctttcaatgc |
209 |
Q |
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| T |
30441396 |
tctcttttgcaacttcggtaccttgaattcccatggaaattccaataccagcttctatcaatgc |
30441333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 7 - 212
Target Start/End: Original strand, 6185060 - 6185265
Alignment:
| Q |
7 |
aaatttataacaagtgctgccacattcactgttaattgaaattgaatgaatttttgaatgttgttgtaaacacatcttccccaatttataactgttacta |
106 |
Q |
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| T |
6185060 |
aaattgataacaagggctgccacattcactgttagttgaaattgaatgaatttttgaatgttgttgtaaacacatcttccccagtttaacactgttacga |
6185159 |
T |
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| Q |
107 |
tagatgcaaaattgtcatctaatataacaatatctgaactctcttttgctacttcagtaccttgaattcccattgaaagtccaatatcagcttctttcaa |
206 |
Q |
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| T |
6185160 |
tagatgcaaaattgtcatctaatataacaatatctgaactctcttttgcaacttcagtaccttgaattcccattgaaagtccgatatcggcttctttcaa |
6185259 |
T |
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| Q |
207 |
tgccgg |
212 |
Q |
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|||||| |
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| T |
6185260 |
tgccgg |
6185265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 8 - 205
Target Start/End: Original strand, 19592829 - 19593017
Alignment:
| Q |
8 |
aatttataacaagtgctgccacattcactgttaattgaaattgaatgaatttttgaatgttgttgtaaacacatcttccccaatttataactgttactat |
107 |
Q |
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|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
19592829 |
aattgataacaagtgctgccacattcact---------aattgaatgaatttttgaatgttgttgtaaacacatcttccccaatttaaaattgttactat |
19592919 |
T |
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| Q |
108 |
agatgcaaaattgtcatctaatataacaatatctgaactctcttttgctacttcagtaccttgaattcccattgaaagtccaatatcagcttctttca |
205 |
Q |
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| T |
19592920 |
agatgcaaaattgtcatctaatataacaatatctgagctctcttttgcaacttcggtaccttgaatttccatggaaagttcaatattagcttctttca |
19593017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 38356883 - 38357076
Alignment:
| Q |
10 |
tttataacaagtgctgccacattcactgttaattgaaattgaatgaatttttgaatgttgttgtaaacacatcttccccaatttataactgttactatag |
109 |
Q |
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| T |
38356883 |
tttatcacaagtgctgcaacattcactgttagttgaaactgaataaatttctggatgttgttgtaaacacatcttccccaccttaaaacagttgcaacag |
38356982 |
T |
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| Q |
110 |
atgcaaaattgtcatctaatataacaatatctgaactctcttttgctacttcagtaccttgaattcccattgaaagtccaatatcagcttcttt |
203 |
Q |
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| T |
38356983 |
aattgaagttgtcgtctaagatgacgatatcggaactttctttggcgacttcggttccttggattcccatagaaagtcctatatcagcttcttt |
38357076 |
T |
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