View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8905A_low_317 (Length: 210)

Name: NF8905A_low_317
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8905A_low_317
NF8905A_low_317
[»] chr5 (2 HSPs)
chr5 (34-198)||(9611705-9611869)
chr5 (34-179)||(27454687-27454832)
[»] chr4 (5 HSPs)
chr4 (34-198)||(26431396-26431560)
chr4 (25-198)||(48444439-48444612)
chr4 (39-179)||(2542454-2542594)
chr4 (77-178)||(36482996-36483097)
chr4 (25-78)||(13962881-13962934)
[»] chr6 (2 HSPs)
chr6 (39-190)||(32955218-32955369)
chr6 (34-198)||(7605966-7606130)
[»] chr8 (3 HSPs)
chr8 (25-198)||(10997805-10997979)
chr8 (34-198)||(32284968-32285132)
chr8 (34-179)||(26706041-26706186)
[»] chr7 (2 HSPs)
chr7 (39-198)||(3964502-3964661)
chr7 (59-141)||(24018440-24018522)
[»] chr1 (1 HSPs)
chr1 (25-198)||(46092710-46092883)
[»] chr2 (2 HSPs)
chr2 (34-179)||(10211086-10211231)
chr2 (34-198)||(23772024-23772188)
[»] scaffold0004 (1 HSPs)
scaffold0004 (34-198)||(214235-214399)
[»] chr3 (2 HSPs)
chr3 (34-198)||(51194075-51194239)
chr3 (34-181)||(21687606-21687753)
[»] scaffold0577 (1 HSPs)
scaffold0577 (39-179)||(4397-4537)
[»] scaffold0011 (1 HSPs)
scaffold0011 (41-179)||(54263-54401)
[»] scaffold0570 (1 HSPs)
scaffold0570 (77-148)||(7072-7143)


Alignment Details
Target: chr5 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 34 - 198
Target Start/End: Original strand, 9611705 - 9611869
Alignment:
Q  34 ctggtacaataggacccactgaagctccattaaccaaaaccgagtaatcaaccgtctgaacacaaagcataatccaactaacccatcgagatgaaaaacc 133  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9611705 ctggcacaataggacccactgaagctccattaaccaaaaccgagtaatcaaccgtctcaacacaaagcataatccaactaacccatcgagatgaaaaacc 9611804  T
Q  134 catttgaatcatgatttctcgtaggtaatcccaatctaatctatcacatactttactgatgtcca 198  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| || ||||||| |||||||    
T  9611805 catttgaatcatgatttctcgtaggtaatcccaatctaatctgtcatatgctttactaatgtcca 9611869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 34 - 179
Target Start/End: Original strand, 27454687 - 27454832
Alignment:
Q  34 ctggtacaataggacccactgaagctccattaaccaaaaccgagtaatcaaccgtctgaacacaaagcataatccaactaacccatcgagatgaaaaacc 133  Q
    ||||||||||||||||||| || |||||||||||||| ||||||||||||||||||| ||||||||||||||||||  |||||||||||||||| |||||    
T  27454687 ctggtacaataggacccaccgatgctccattaaccaagaccgagtaatcaaccgtctcaacacaaagcataatccagttaacccatcgagatgagaaacc 27454786  T
Q  134 catttgaatcatgatttctcgtaggtaatcccaatctaatctatca 179  Q
    ||||||||||||||| |||||||| ||||||||||||| |||||||    
T  27454787 catttgaatcatgatatctcgtagataatcccaatctagtctatca 27454832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 133; Significance: 2e-69; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 34 - 198
Target Start/End: Original strand, 26431396 - 26431560
Alignment:
Q  34 ctggtacaataggacccactgaagctccattaaccaaaaccgagtaatcaaccgtctgaacacaaagcataatccaactaacccatcgagatgaaaaacc 133  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     
T  26431396 ctggcacaataggacccactgaagctccattaaccaaaaccgagtaatcaaccgtctcaacacaaagcataatccaactaacccatcgagatgaaaaact 26431495  T
Q  134 catttgaatcatgatttctcgtaggtaatcccaatctaatctatcacatactttactgatgtcca 198  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||| || ||||||| |||||||    
T  26431496 catttgaatcatgatttcttgtaggtaatcccaatctaatctgtcatatgctttactaatgtcca 26431560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 25 - 198
Target Start/End: Complemental strand, 48444612 - 48444439
Alignment:
Q  25 ggccgcgggctggtacaataggacccactgaagctccattaaccaaaaccgagtaatcaaccgtctgaacacaaagcataatccaactaacccatcgaga 124  Q
    |||||||  |||||||||||||| |||||   |||||||||||||| || || || |||||||||| |||||||||||||||||| |||||||| |||||    
T  48444612 ggccgcgccctggtacaataggatccactagtgctccattaaccaagactgaatagtcaaccgtctcaacacaaagcataatccagctaacccaacgaga 48444513  T
Q  125 tgaaaaacccatttgaatcatgatttctcgtaggtaatcccaatctaatctatcacatactttactgatgtcca 198  Q
    ||| |||||||||| ||||||||| |||||||| || |||||||||| ||||||| |  ||||||| |||||||    
T  48444512 tgagaaacccatttaaatcatgatatctcgtagatagtcccaatctagtctatcataagctttactaatgtcca 48444439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 39 - 179
Target Start/End: Complemental strand, 2542594 - 2542454
Alignment:
Q  39 acaataggacccactgaagctccattaaccaaaaccgagtaatcaaccgtctgaacacaaagcataatccaactaacccatcgagatgaaaaacccattt 138  Q
    |||||||||||||| |  |||||||| ||||| |||||||| |||||||| | |||  ||||| |||||||||||||||||   || || ||||||||||    
T  2542594 acaataggacccaccgttgctccattgaccaagaccgagtagtcaaccgtttcaacgtaaagcgtaatccaactaacccattcggaggagaaacccattt 2542495  T
Q  139 gaatcatgatttctcgtaggtaatcccaatctaatctatca 179  Q
    |||||||||| ||||| ||| |||||||||||||| |||||    
T  2542494 gaatcatgatatctcgaaggaaatcccaatctaatatatca 2542454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 178
Target Start/End: Original strand, 36482996 - 36483097
Alignment:
Q  77 gtaatcaaccgtctgaacacaaagcataatccaactaacccatcgagatgaaaaacccatttgaatcatgatttctcgtaggtaatcccaatctaatcta 176  Q
    ||||||||| |||| |||||| |||||||||||   |||||||| ||  ||||||||||| ||||||||||| || || || || |||||||| || |||    
T  36482996 gtaatcaactgtctcaacacatagcataatccattgaacccatctagtagaaaaacccatctgaatcatgatatcacggagatattcccaatccaaccta 36483095  T
Q  177 tc 178  Q
    ||    
T  36483096 tc 36483097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 13962934 - 13962881
Alignment:
Q  25 ggccgcgggctggtacaataggacccactgaagctccattaaccaaaaccgagt 78  Q
    |||||||  |||| ||||||||||||| ||| |||||||||||||| |||||||    
T  13962934 ggccgcgccctggcacaataggacccattgatgctccattaaccaagaccgagt 13962881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 128; Significance: 2e-66; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 39 - 190
Target Start/End: Complemental strand, 32955369 - 32955218
Alignment:
Q  39 acaataggacccactgaagctccattaaccaaaaccgagtaatcaaccgtctgaacacaaagcataatccaactaacccatcgagatgaaaaacccattt 138  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  32955369 acaataggacccactgatgctccattaaccaacaccgagtaatcaaccgtctcaacacaaagcataatccaactaacccatcgagatgaaaaacccattt 32955270  T
Q  139 gaatcatgatttctcgtaggtaatcccaatctaatctatcacatactttact 190  Q
    ||||||||||||||||||||||||||||||||||||| ||| || |||||||    
T  32955269 gaatcatgatttctcgtaggtaatcccaatctaatctgtcatatgctttact 32955218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 34 - 198
Target Start/End: Complemental strand, 7606130 - 7605966
Alignment:
Q  34 ctggtacaataggacccactgaagctccattaaccaaaaccgagtaatcaaccgtctgaacacaaagcataatccaactaacccatcgagatgaaaaacc 133  Q
    |||||||||||||||||  ||| |||||||||||||| ||||||||||||||||||| ||||||||||||||| || ||||||||||||||||| |||||    
T  7606130 ctggtacaataggaccctttgatgctccattaaccaagaccgagtaatcaaccgtctcaacacaaagcataattcagctaacccatcgagatgagaaacc 7606031  T
Q  134 catttgaatcatgatttctcgtaggtaatcccaatctaatctatcacatactttactgatgtcca 198  Q
    ||||||||||||||| |||||||| ||||||||||||| ||||||| |  ||||||| |||||||    
T  7606030 catttgaatcatgatatctcgtagataatcccaatctagtctatcataagctttactaatgtcca 7605966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 127; Significance: 9e-66; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 25 - 198
Target Start/End: Complemental strand, 10997979 - 10997805
Alignment:
Q  25 ggccgcgggctggtacaataggacccactgaagctccattaaccaaaaccgagtaatcaaccgtctgaacacaaagcataatccaactaacccatcgaga 124  Q
    |||||||  |||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10997979 ggccgcgtcctggcacaataggacccactgatgctccattaaccaaaatcgagtaatcaaccgtctcaacacaaagcataatccaactaacccatcgaga 10997880  T
Q  125 tgaaaaa-cccatttgaatcatgatttctcgtaggtaatcccaatctaatctatcacatactttactgatgtcca 198  Q
    | ||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||    
T  10997879 taaaaaatcccatttgaatcatgatttctcgtaggtaatcccaatctaatctatcatatgctttactaatgtcca 10997805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 34 - 198
Target Start/End: Original strand, 32284968 - 32285132
Alignment:
Q  34 ctggtacaataggacccactgaagctccattaaccaaaaccgagtaatcaaccgtctgaacacaaagcataatccaactaacccatcgagatgaaaaacc 133  Q
    ||||||||||||||||||| || |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  32284968 ctggtacaataggacccaccgatgctccattaaccaagaccgagtaatcaaccgtctcaacacaaagcataatccaactaacccatcgagatgagaaacc 32285067  T
Q  134 catttgaatcatgatttctcgtaggtaatcccaatctaatctatcacatactttactgatgtcca 198  Q
     | ||||||||||||||||||||| ||||||||||||| | ||||| |  ||||||| |||||||    
T  32285068 taattgaatcatgatttctcgtagataatcccaatctagtatatcataagctttactaatgtcca 32285132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 34 - 179
Target Start/End: Complemental strand, 26706186 - 26706041
Alignment:
Q  34 ctggtacaataggacccactgaagctccattaaccaaaaccgagtaatcaaccgtctgaacacaaagcataatccaactaacccatcgagatgaaaaacc 133  Q
    |||||||||||| |||||| || ||| |||||||||| || |||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||    
T  26706186 ctggtacaatagaacccaccgatgctgcattaaccaagacggagtaatcaaccgtctcaacacaaagcataatccagctaacccatcgagatgagaaacc 26706087  T
Q  134 catttgaatcatgatttctcgtaggtaatcccaatctaatctatca 179  Q
    ||||||||||||||| ||| |||| || ||||||||||| ||||||    
T  26706086 catttgaatcatgatatcttgtagatagtcccaatctaacctatca 26706041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 39 - 198
Target Start/End: Original strand, 3964502 - 3964661
Alignment:
Q  39 acaataggacccactgaagctccattaaccaaaaccgagtaatcaaccgtctgaacacaaagcataatccaactaacccatcgagatgaaaaacccattt 138  Q
    ||||||||||||| ||| |||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3964502 acaataggacccattgatgctccattaaccaatactgagtaatcaaccgtctcaacacaaagcataatccaactaacccatcgagatgaaaaacccattt 3964601  T
Q  139 gaatcatgatttctcgtaggtaatcccaatctaatctatcacatactttactgatgtcca 198  Q
    ||||||||||||||||||||||||||||||||||||| ||| || ||||||| |||||||    
T  3964602 gaatcatgatttctcgtaggtaatcccaatctaatctgtcatatgctttactaatgtcca 3964661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 141
Target Start/End: Complemental strand, 24018522 - 24018440
Alignment:
Q  59 tccattaaccaaaaccgagtaatcaaccgtctgaacacaaagcataatccaactaacccatcgagatgaaaaacccatttgaa 141  Q
    ||||||||||| |||| | || || ||||||| |||||| | ||||||| |||||||||| | ||||||||| ||| ||||||    
T  24018522 tccattaaccagaacctaatagtctaccgtctcaacacataacataatcaaactaacccaacaagatgaaaatcccttttgaa 24018440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 9e-63; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 25 - 198
Target Start/End: Original strand, 46092710 - 46092883
Alignment:
Q  25 ggccgcgggctggtacaataggacccactgaagctccattaaccaaaaccgagtaatcaaccgtctgaacacaaagcataatccaactaacccatcgaga 124  Q
    |||||||  |||| ||||||||||||||||| ||||||||||| ||||| |||||||||||||||| |||||||| |||||||||||||||||||| |||    
T  46092710 ggccgcgtcctggaacaataggacccactgatgctccattaacaaaaactgagtaatcaaccgtctcaacacaaaacataatccaactaacccatcaaga 46092809  T
Q  125 tgaaaaacccatttgaatcatgatttctcgtaggtaatcccaatctaatctatcacatactttactgatgtcca 198  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||| |||||||    
T  46092810 tgaaaaacccatttgaatcatgattcctcgtaggtaatcccaatctaatctatcatatgctttactaatgtcca 46092883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 34 - 179
Target Start/End: Complemental strand, 10211231 - 10211086
Alignment:
Q  34 ctggtacaataggacccactgaagctccattaaccaaaaccgagtaatcaaccgtctgaacacaaagcataatccaactaacccatcgagatgaaaaacc 133  Q
    |||| |||||||||||||| || |||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||| ||| || |||||    
T  10211231 ctggcacaataggacccaccgatgctccattaaccaagaccgagtaatcaactgtctcaacacaaagcataatccaactaacccatctagaggagaaacc 10211132  T
Q  134 catttgaatcatgatttctcgtaggtaatcccaatctaatctatca 179  Q
    ||||||| ||||||| ||||| ||||||||||| ||||||||||||    
T  10211131 catttgagtcatgatatctcgaaggtaatcccagtctaatctatca 10211086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 34 - 198
Target Start/End: Original strand, 23772024 - 23772188
Alignment:
Q  34 ctggtacaataggacccactgaagctccattaaccaaaaccgagtaatcaaccgtctgaacacaaagcataatccaactaacccatcgagatgaaaaacc 133  Q
    ||||||||||||||| |||||  ||||| |||||| | || || |||||| |||||| ||||||||||||||| || ||||||||||||||||| |||||    
T  23772024 ctggtacaataggacacactggtgctccgttaacctagactgaataatcatccgtctcaacacaaagcataatacagctaacccatcgagatgagaaacc 23772123  T
Q  134 catttgaatcatgatttctcgtaggtaatcccaatctaatctatcacatactttactgatgtcca 198  Q
    ||||||||||||||| |||||||| ||||||||||||| ||||||| |  ||||||| |||||||    
T  23772124 catttgaatcatgatatctcgtagataatcccaatctagtctatcataagctttactaatgtcca 23772188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 34 - 198
Target Start/End: Complemental strand, 214399 - 214235
Alignment:
Q  34 ctggtacaataggacccactgaagctccattaaccaaaaccgagtaatcaaccgtctgaacacaaagcataatccaactaacccatcgagatgaaaaacc 133  Q
    |||||| ||||||| |||| || |||||||||||||| |||||||||||||| | || |||||||||||||||||| |||| |||||||||||| |||||    
T  214399 ctggtagaataggatccaccgatgctccattaaccaagaccgagtaatcaactgcctcaacacaaagcataatccagctaatccatcgagatgagaaacc 214300  T
Q  134 catttgaatcatgatttctcgtaggtaatcccaatctaatctatcacatactttactgatgtcca 198  Q
    |||||||| |||||| |||||||| ||||||||||||| ||||||| |  |||||||||||||||    
T  214299 catttgaagcatgatatctcgtagataatcccaatctagtctatcataagctttactgatgtcca 214235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 34 - 198
Target Start/End: Original strand, 51194075 - 51194239
Alignment:
Q  34 ctggtacaataggacccactgaagctccattaaccaaaaccgagtaatcaaccgtctgaacacaaagcataatccaactaacccatcgagatgaaaaacc 133  Q
    ||||||||||||||||||| || |||| ||||||||| | |||||||||||  |||| ||||||||||||||||||||||||| |||||||||| |||||    
T  51194075 ctggtacaataggacccaccgatgctctattaaccaagatcgagtaatcaattgtctcaacacaaagcataatccaactaaccgatcgagatgagaaacc 51194174  T
Q  134 catttgaatcatgatttctcgtaggtaatcccaatctaatctatcacatactttactgatgtcca 198  Q
    ||||||||||||||| |||||||| |||| |||||||| ||||||| |  ||||||| |||||||    
T  51194175 catttgaatcatgatatctcgtagataattccaatctagtctatcataagctttactaatgtcca 51194239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 34 - 181
Target Start/End: Complemental strand, 21687753 - 21687606
Alignment:
Q  34 ctggtacaataggacccactgaagctccattaaccaaaaccgagtaatcaaccgtctgaacacaaagcataatccaactaacccatcgagatgaaaaacc 133  Q
    |||| ||||||||||||||||| |||||||||||||| | |||||| |||||||||| ||||||||| |||||| |||||||||||| ||| ||||| ||    
T  21687753 ctggcacaataggacccactgatgctccattaaccaagatcgagtagtcaaccgtctcaacacaaaggataatctaactaacccatctagaggaaaaccc 21687654  T
Q  134 catttgaatcatgatttctcgtaggtaatcccaatctaatctatcaca 181  Q
    ||||||||||||||| ||||||| ||| ||||||||||||| ||||||    
T  21687653 catttgaatcatgatatctcgtaagtagtcccaatctaatcgatcaca 21687606  T

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Target: scaffold0577 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0577
Description:

Target: scaffold0577; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 39 - 179
Target Start/End: Original strand, 4397 - 4537
Alignment:
Q  39 acaataggacccactgaagctccattaaccaaaaccgagtaatcaaccgtctgaacacaaagcataatccaactaacccatcgagatgaaaaacccattt 138  Q
    ||||||| |||||| || |||||| ||||||| | ||||||||||||||||| |||| |||||||| |||| | |||||||||||| || ||||||||||    
T  4397 acaatagaacccaccgatgctccaataaccaagatcgagtaatcaaccgtctcaacataaagcatagtccagcaaacccatcgagaggagaaacccattt 4496  T
Q  139 gaatcatgatttctcgtaggtaatcccaatctaatctatca 179  Q
    || ||||||| ||||||||||||||||||||||||||||||    
T  4497 gattcatgatatctcgtaggtaatcccaatctaatctatca 4537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 41 - 179
Target Start/End: Complemental strand, 54401 - 54263
Alignment:
Q  41 aataggacccactgaagctccattaaccaaaaccgagtaatcaaccgtctgaacacaaagcataatccaactaacccatcgagatgaaaaacccatttga 140  Q
    ||||||||||||  | |||||||||||||| |||||||||| |||||||| |||||||| ||||||||| ||||||||| |||| || ||||||||||||    
T  54401 aataggacccaccaatgctccattaaccaagaccgagtaattaaccgtctcaacacaaaacataatccagctaacccattgagacgagaaacccatttga 54302  T
Q  141 atcatgatttctcgtaggtaatcccaatctaatctatca 179  Q
    |||||||| ||||| || ||||||||||||| |||||||    
T  54301 atcatgatatctcgcagataatcccaatctagtctatca 54263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 148
Target Start/End: Original strand, 7072 - 7143
Alignment:
Q  77 gtaatcaaccgtctgaacacaaagcataatccaactaacccatcgagatgaaaaacccatttgaatcatgat 148  Q
    ||||||||| |||| |||||| |||||||||||   |||||||| ||  ||||||||||| |||||||||||    
T  7072 gtaatcaactgtctcaacacatagcataatccattgaacccatctagtagaaaaacccatctgaatcatgat 7143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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