View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_319 (Length: 210)
Name: NF8905A_low_319
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_319 |
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| [»] scaffold0891 (2 HSPs) |
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| [»] scaffold1335 (1 HSPs) |
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| [»] scaffold2086 (1 HSPs) |
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| [»] scaffold1996 (1 HSPs) |
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Alignment Details
Target: scaffold0891 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 10 - 189
Target Start/End: Original strand, 4007 - 4185
Alignment:
| Q |
10 |
gatggacatcatggaaggagaaaaggaagaagaattgagacaaagtgcttggagtggaagaagaaagctagaactaatttgaggggatcatcatacaata |
109 |
Q |
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| T |
4007 |
gatggaaatgatggaaggagaaaaggaagaagaattgagacaaagtgcttggagtggaagaagaaagctagaactaatttgaggg-atcatcatacaata |
4105 |
T |
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| Q |
110 |
atttccagaagtttatcaaagaggttaatgataataaagctatttgaattccaaatacaagtttagtatggtctatgtat |
189 |
Q |
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| T |
4106 |
atttccagaagtttatcaaagaggttattgataataaagctatttgaattccaaatacaagtttagtatggtctatgtat |
4185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0891; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 3635 - 3687
Alignment:
| Q |
27 |
gagaaaaggaagaagaattgagaca-aagtgcttggagtggaagaagaaagct |
78 |
Q |
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| T |
3635 |
gagaaaagggaaaagaaatgagacacaagtgcttggaatggaagaagaaagct |
3687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 178
Target Start/End: Complemental strand, 35774463 - 35774298
Alignment:
| Q |
20 |
atggaaggagaaaaggaagaagaattgagaca-aagtgcttggagtggaagaagaaagctagaa------ctaatttgaggggatcatcatacaataatt |
112 |
Q |
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| T |
35774463 |
atggaaggagaaaagggaaaagaaatgagacacaagtgcttggagtggaagaagaaagctagaaaagctactaatttgggtggatcatcatacaataatt |
35774364 |
T |
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| Q |
113 |
tccagaagtttatcaaagaggttaatgataataaagctatttgaattccaaatacaagtttagtat |
178 |
Q |
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| T |
35774363 |
tccagaagttaatcaaagaggttcttcatcataaagctatttgagtcccaaatacaagtctagtat |
35774298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 135
Target Start/End: Complemental strand, 35848254 - 35848122
Alignment:
| Q |
10 |
gatggacatcatggaaggagaaaaggaagaagaattgagacaaa-gtgcttggagtggaagaagaaagctaga------actaatttgaggggatcatca |
102 |
Q |
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| T |
35848254 |
gatggaaatgatggaaggagaaaaaggaaaagaaatgagacaaaagagtttggtgtggaagaagaaagctacagatgctactaatttgggaggatcatca |
35848155 |
T |
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| Q |
103 |
tacaataatttccagaagtttatcaaagaggtt |
135 |
Q |
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| T |
35848154 |
tacaataatttccataagttaatcaaagaggtt |
35848122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1335 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold1335
Description:
Target: scaffold1335; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 135
Target Start/End: Original strand, 9 - 141
Alignment:
| Q |
10 |
gatggacatcatggaaggagaaaaggaagaagaattgagacaaa-gtgcttggagtggaagaagaaagctaga------actaatttgaggggatcatca |
102 |
Q |
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| T |
9 |
gatggaaatgatggaaggagaaaaaggaaaagaaatgagacaaaagagtttggtgtggaagaagaaagctacagatgctactaatttgggaggatcatca |
108 |
T |
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| Q |
103 |
tacaataatttccagaagtttatcaaagaggtt |
135 |
Q |
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| T |
109 |
tacaataatttccataagttaatcaaagaggtt |
141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2086 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold2086
Description:
Target: scaffold2086; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 481 - 551
Alignment:
| Q |
10 |
gatggacatcatggaaggagaaaaggaagaagaattgagaca-aagtgcttggagtggaagaagaaagcta |
79 |
Q |
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| T |
481 |
gatggaaatgatggaaggagaaaagggaaaagaaatgagacataagtgcttggaatggaagaagaaagcta |
551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold1996
Description:
Target: scaffold1996; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 481 - 551
Alignment:
| Q |
10 |
gatggacatcatggaaggagaaaaggaagaagaattgagaca-aagtgcttggagtggaagaagaaagcta |
79 |
Q |
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| T |
481 |
gatggaaatgatggaaggagaaaagggaaaagaaatgagacataagtgcttggaatggaagaagaaagcta |
551 |
T |
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