View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_32 (Length: 384)
Name: NF8905A_low_32
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 39392441 - 39392064
Alignment:
| Q |
1 |
atactaaatttagacaatctaaaatcaaaaaacttccattaatatccagattaattaataggaaaatgatgaccaaaaatagacttcatagggagagtat |
100 |
Q |
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| T |
39392441 |
atactaaatttagacaatctaaaatcaaaaaacttccattaatatccagattaattaataggaaaatgatgaccaaaaatagacttcatagggagagtat |
39392342 |
T |
|
| Q |
101 |
gatctataattctcttgtataaatatcattcttcaagtcacatgtaattgagtcatccaaattggtgaagggtttctaaattgcagttataggttgccat |
200 |
Q |
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| T |
39392341 |
gatctataattctcttgtataaataccattcttcaagtcacatgtaattgagtcatccaaattggtgaagggtttctaaattgcagttataggttgccat |
39392242 |
T |
|
| Q |
201 |
atgagcaaccacaacatcatnnnnnnnnnctgcattttaaaatcttaaacattttgtttaatcaaggtttcaagctgggaattaataaatatcaccatca |
300 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
39392241 |
atgagcaaccacaacatcat-aaaaaaaactgcattttaaaatcttaaacattttgtttaatcaaggtttcaagctgggaattaataaatatcaccacca |
39392143 |
T |
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| Q |
301 |
atatggctacgacaacaaacctttttatcttaggcattcttttcattagcgtgataggtgcatcgggtcgtagcctcct |
379 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39392142 |
atatggctacgacaacaaacttttttatcttaggcattcttttcattagcgtgataggtgcatcgggtcgtagcctcct |
39392064 |
T |
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