View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_328 (Length: 208)
Name: NF8905A_low_328
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_328 |
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| [»] chr7 (3 HSPs) |
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| [»] scaffold0227 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 49 - 208
Target Start/End: Complemental strand, 35743114 - 35742955
Alignment:
| Q |
49 |
agattttgcattgactcttctgatatttcttgtgttgcatcggtattttgaagtcatatcgtaatatttacacttctgcttgcttgaatttgtagttcac |
148 |
Q |
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| T |
35743114 |
agattttgcattgactcttctgatatttcttgtgttgcatcagtattttgaagtcagatcgtaatatttacacttctgcttgcttgaatttgtagttcac |
35743015 |
T |
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| Q |
149 |
ttatgaccctttccgatcaagaggatcaaattgatcgaatcagtgacttaccatgcaatg |
208 |
Q |
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| T |
35743014 |
ttatgactctttccgatcaagaggatcaaattgatcgaatcagtgacttaccatgcaatg |
35742955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 109 - 155
Target Start/End: Complemental strand, 35749425 - 35749379
Alignment:
| Q |
109 |
gtaatatttacacttctgcttgcttgaatttgtagttcacttatgac |
155 |
Q |
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| T |
35749425 |
gtaatatttacacttgtgcttgcttgaatttgtagttaccttatgac |
35749379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 35749353 - 35749317
Alignment:
| Q |
172 |
gatcaaattgatcgaatcagtgacttaccatgcaatg |
208 |
Q |
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| T |
35749353 |
gatcacattgatcgaatcagtgacttaccatgtaatg |
35749317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 3733 - 3697
Alignment:
| Q |
172 |
gatcaaattgatcgaatcagtgacttaccatgcaatg |
208 |
Q |
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| T |
3733 |
gatcacattgatcgaatcagtgacttaccatgtaatg |
3697 |
T |
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