View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_329 (Length: 208)
Name: NF8905A_low_329
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_329 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 7e-82; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 23 - 192
Target Start/End: Complemental strand, 20738864 - 20738695
Alignment:
| Q |
23 |
ataatactaacacttgaaattaaagacatgtttgatgtccaacaccagcacgatactgacacgtatattatctatatctagctaggattattgattggat |
122 |
Q |
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| T |
20738864 |
ataacactaacacttgaaattaaagacatgttcgatgtccaacaccagcacgatactgacacgtatattatctatatctagctaggattattgattagat |
20738765 |
T |
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| Q |
123 |
ttgattgatttatatgcaggacaaaaagcaaaggaagaagcaccagacctaagcaaatttatgaatgatg |
192 |
Q |
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| T |
20738764 |
ttgattgatttatatgcaggacaaaaaccaaaggaagaagcaccagacctaagcaaatttatgaatgatg |
20738695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 23 - 192
Target Start/End: Complemental strand, 20731125 - 20730956
Alignment:
| Q |
23 |
ataatactaacacttgaaattaaagacatgtttgatgtccaacaccagcacgatactgacacgtatattatctatatctagctaggattattgattggat |
122 |
Q |
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| T |
20731125 |
ataacactaacacttgaaattaaagacatgttcgatgtccaacaccagcacgatactgacacatatattatctatatctagctagtaatattgattggat |
20731026 |
T |
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| Q |
123 |
ttgattgatttatatgcaggacaaaaagcaaaggaagaagcaccagacctaagcaaatttatgaatgatg |
192 |
Q |
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| T |
20731025 |
ttgattgatttatatgcaggacaaaaactaaaggaagaagcaccagacctaagcaaatttatgaatgatg |
20730956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 135 - 190
Target Start/End: Complemental strand, 20728116 - 20728061
Alignment:
| Q |
135 |
tatgcaggacaaaaagcaaaggaagaagcaccagacctaagcaaatttatgaatga |
190 |
Q |
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| T |
20728116 |
tatgtaggacaaaaagcaaaggaggaagcactagacctgagcaaatttatgaatga |
20728061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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