View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_336 (Length: 202)
Name: NF8905A_low_336
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_336 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 7e-79; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 27514584 - 27514412
Alignment:
| Q |
17 |
tggtgttgtctaagagtgtaccctaccttcttaaacaa-tgtccaatacaaagcttccacttgctaccaaatgagatgtcagcctcatatttcttcatga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27514584 |
tggtgttgtctaagagtgtaccctaccttcttaaacaaatgtccaatacaaagcttccacttgctaccaaatgagatgtcagcctcatatttcttcatga |
27514485 |
T |
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| Q |
116 |
tttaattggtgtacttcataatgtttgaaacatgctttagacatgttttcttcattatgataatgctgatgtc |
188 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
27514484 |
tttaattggtgtacttcataattttgtaaacatgctttagacatgttttctgcattatgataatgctgatgtc |
27514412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 27468777 - 27468957
Alignment:
| Q |
17 |
tggtgttgtctaagagtgtaccctaccttcttaaacaa-tgtccaatacaaagcttccacttgctaccaaatgagatgt---------cagcctcatatt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
27468777 |
tggtgttgtctaagagtgtaccctaccttcttaaacaaatgtccaatacaaagcttccacttgctaccaaatgagatgtgctcaagtgcagcctcatatt |
27468876 |
T |
|
| Q |
107 |
tcttcatgatttaattggtgtacttcataatgtttgaaacatgctttagacatgttttcttcattatgataatgctgatgt |
187 |
Q |
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| T |
27468877 |
tcttcatgatttaattggtgtacttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgccgatgt |
27468957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 27524223 - 27524043
Alignment:
| Q |
17 |
tggtgttgtctaagagtgtaccctaccttcttaaacaatgtccaatacaaagcttccacttgctaccaaatgagatgt---------cagcctcatattt |
107 |
Q |
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| T |
27524223 |
tggtgttgtcttagagtgtaccctaccttcttaaacaatatccaatacaaagcttccaattgctaccaaatgagatgtgctcaagtgcaacgtcatattt |
27524124 |
T |
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| Q |
108 |
cttcatgatttaattggtgtacttcataatgtttgaaacatgctttagacatgttttcttcattatgataatgctgatgtc |
188 |
Q |
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| T |
27524123 |
cttcatgatttaattggtttccttcataatttcgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtc |
27524043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 27508565 - 27508487
Alignment:
| Q |
17 |
tggtgttgtctaagagtgtaccctaccttcttaaacaatgtccaatacaaagcttccacttgctaccaaatgagatgtc |
95 |
Q |
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| T |
27508565 |
tggtgctgtcttagagtgtaccctaccttcttaaacaatgtccaatacaaagcttccacttcctaccaaatgagatgtc |
27508487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 27503622 - 27503444
Alignment:
| Q |
17 |
tggtgttgtctaagagtgtaccctacctt-cttaaacaatgtccaatacaaagcttccacttgctaccaaatgagatgt---------cagcctcatatt |
106 |
Q |
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|
||||||||||| ||||||| ||||||||| | |||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||| |
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| T |
27503622 |
tggtgttgtcttagagtgtcccctacctttcctaaacaatgtccaatacaaagcttccacttgctaaaaaataagatgtgatcaagtatagcctcatatt |
27503523 |
T |
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| Q |
107 |
tcttcatgatttaattggtgtacttcataatgtttgaaacatgctttagacatgttttcttcattatgataatgctgatgtc |
188 |
Q |
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| T |
27503522 |
tgttcatgatttaattagcg---tcaataattttgtaaacatgcttcagacatgttttcttcattatgataatgttgatgtc |
27503444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 27476011 - 27476187
Alignment:
| Q |
18 |
ggtgttgtctaagagtgtaccctacctt-cttaaacaatgtccaatacaaagcttccacttgctaccaaatgagatgt---------cagcctcatattt |
107 |
Q |
| |
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|||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||| |
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| T |
27476011 |
ggtgttgtcttagagtgtaccctacctttcctaaacaatgtccaatacaaagcttccacttgctaaaaaataagatgtgatcaagtatagcctcatattt |
27476110 |
T |
|
| Q |
108 |
cttcatgatttaattggtgtacttcataatgtttgaaacatgctttagacatgttttcttcattatgataatgctgatgt |
187 |
Q |
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| T |
27476111 |
gttcatgatttaattagcg---tcaataattttgtaagcatgcttcagacatgttttcttcattatgataatgccgatgt |
27476187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 180
Target Start/End: Complemental strand, 27489718 - 27489638
Alignment:
| Q |
98 |
cctcatatttcttcatgatttaattggtgtacttcataatgtttgaaacatgctttagacatgttttcttcattatgataatg |
180 |
Q |
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|
|||||||||| |||||| ||||||||| |||| |||| || ||||||||||||||||||||||||||||||||| |||| |
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| T |
27489718 |
cctcatatttattcatgcattaattggt--actttgtaattttgtaaacatgctttagacatgttttcttcattatgaaaatg |
27489638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 188
Target Start/End: Complemental strand, 27508486 - 27508427
Alignment:
| Q |
129 |
cttcataatgtttgaaacatgctttagacatgttttcttcattatgataatgctgatgtc |
188 |
Q |
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| T |
27508486 |
cttcataattttataaacatgctgaagacatgttttcttcattatgacaatgctgatgtc |
27508427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 143 - 177
Target Start/End: Original strand, 27556974 - 27557008
Alignment:
| Q |
143 |
aaacatgctttagacatgttttcttcattatgata |
177 |
Q |
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| T |
27556974 |
aaacatgctttagacatgttttcttcattatgata |
27557008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 27517433 - 27517369
Alignment:
| Q |
27 |
taagagtgtaccctaccttcttaaacaatgtccaatacaaagcttccacttgctaccaaatgaga |
91 |
Q |
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|
||||| ||||||| ||||||| |||||||| |||| |||||||||||||||| ||||| ||||| |
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| T |
27517433 |
taagattgtaccccaccttctcaaacaatggccaacacaaagcttccacttggaaccaattgaga |
27517369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 27497875 - 27497908
Alignment:
| Q |
155 |
gacatgttttcttcattatgataatgctgatgtc |
188 |
Q |
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| T |
27497875 |
gacatgttttcttcattatgataatgttgatgtc |
27497908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 188
Target Start/End: Complemental strand, 27506325 - 27506265
Alignment:
| Q |
128 |
acttcataatgtttgaaacatgctttagacatgttttcttcattatgataatgctgatgtc |
188 |
Q |
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|||||||||| || ||||||| || |||||||||||||||||||| | | |||||||||| |
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| T |
27506325 |
acttcataattttgtaaacatgtttcagacatgttttcttcattatcaaagtgctgatgtc |
27506265 |
T |
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Back To:
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