View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8905A_low_337 (Length: 202)

Name: NF8905A_low_337
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8905A_low_337
NF8905A_low_337
[»] chr5 (14 HSPs)
chr5 (5-198)||(29896706-29896899)
chr5 (2-186)||(22955465-22955649)
chr5 (4-186)||(34465156-34465338)
chr5 (26-195)||(1801709-1801878)
chr5 (26-195)||(7258459-7258628)
chr5 (26-195)||(7790405-7790574)
chr5 (26-195)||(12391950-12392119)
chr5 (20-198)||(36379496-36379674)
chr5 (20-198)||(37004168-37004346)
chr5 (20-198)||(5443730-5443908)
chr5 (20-198)||(17953561-17953739)
chr5 (20-198)||(11947929-11948107)
chr5 (20-198)||(15788247-15788425)
chr5 (20-198)||(31516769-31516947)
[»] chr1 (3 HSPs)
chr1 (5-198)||(2339975-2340168)
chr1 (26-195)||(6201487-6201656)
chr1 (20-198)||(5632647-5632825)
[»] chr7 (11 HSPs)
chr7 (5-198)||(841773-841966)
chr7 (5-198)||(848949-849142)
chr7 (5-198)||(1206953-1207146)
chr7 (4-186)||(801934-802116)
chr7 (4-186)||(16290801-16290983)
chr7 (26-195)||(23883312-23883481)
chr7 (26-195)||(42634783-42634952)
chr7 (26-195)||(8814027-8814196)
chr7 (20-198)||(9466044-9466222)
chr7 (20-198)||(30373472-30373650)
chr7 (20-198)||(16396975-16397153)
[»] scaffold0387 (1 HSPs)
scaffold0387 (20-202)||(5832-6014)
[»] chr6 (9 HSPs)
chr6 (20-198)||(2411981-2412159)
chr6 (2-167)||(20054614-20054779)
chr6 (26-195)||(20044396-20044565)
chr6 (26-195)||(619668-619837)
chr6 (26-195)||(16821526-16821695)
chr6 (26-195)||(24147211-24147380)
chr6 (26-195)||(27513536-27513705)
chr6 (4-198)||(2410416-2410606)
chr6 (20-198)||(9139923-9140101)
[»] chr2 (3 HSPs)
chr2 (1-186)||(21764040-21764225)
chr2 (20-198)||(22945855-22946033)
chr2 (20-198)||(12380120-12380298)
[»] scaffold0019 (1 HSPs)
scaffold0019 (2-198)||(17299-17495)
[»] chr3 (12 HSPs)
chr3 (4-186)||(20439609-20439791)
chr3 (4-186)||(41436774-41436956)
chr3 (26-195)||(6197990-6198159)
chr3 (26-195)||(8807906-8808075)
chr3 (26-195)||(15533637-15533806)
chr3 (26-195)||(21611336-21611505)
chr3 (26-195)||(46397011-46397180)
chr3 (26-195)||(8620030-8620200)
chr3 (2-198)||(15596526-15596722)
chr3 (2-198)||(15914999-15915195)
chr3 (20-198)||(46376735-46376913)
chr3 (20-198)||(5954477-5954655)
[»] scaffold0551 (2 HSPs)
scaffold0551 (26-195)||(9879-10048)
scaffold0551 (83-195)||(3822-3934)
[»] scaffold0435 (1 HSPs)
scaffold0435 (26-198)||(12431-12603)
[»] scaffold0183 (1 HSPs)
scaffold0183 (2-186)||(31828-32012)
[»] chr4 (7 HSPs)
chr4 (26-186)||(15575638-15575798)
chr4 (17-195)||(16724575-16724753)
chr4 (26-195)||(14920939-14921108)
chr4 (26-195)||(15899271-15899440)
chr4 (26-195)||(18039850-18040019)
chr4 (26-195)||(15571510-15571679)
chr4 (26-195)||(22707540-22707709)
[»] chr8 (1 HSPs)
chr8 (26-195)||(21479703-21479872)
[»] scaffold1197 (1 HSPs)
scaffold1197 (23-167)||(2143-2287)
[»] scaffold0029 (2 HSPs)
scaffold0029 (17-167)||(74786-74936)
scaffold0029 (20-198)||(25623-25801)
[»] scaffold0441 (1 HSPs)
scaffold0441 (26-167)||(10654-10795)
[»] scaffold0104 (1 HSPs)
scaffold0104 (2-164)||(28848-29010)
[»] scaffold0094 (1 HSPs)
scaffold0094 (2-198)||(38875-39071)
[»] scaffold0002 (1 HSPs)
scaffold0002 (20-198)||(302366-302544)
[»] scaffold0595 (1 HSPs)
scaffold0595 (20-198)||(9440-9619)


Alignment Details
Target: chr5 (Bit Score: 146; Significance: 4e-77; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 5 - 198
Target Start/End: Complemental strand, 29896899 - 29896706
Alignment:
Q  5 gaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgacca 104  Q
    |||||||||||||||||||| ||||||||||| |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||| ||||||||||||    
T  29896899 gaagctccatctttaactaatcgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggcgtacttccgacca 29896800  T
Q  105 tcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 198  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||    
T  29896799 tcttctcgtagtagaaatgattgagagtttttaagaagatcttggtcatctccttctcttctatacgtgggctgacttgggcagcggtatctct 29896706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 2 - 186
Target Start/End: Original strand, 22955465 - 22955649
Alignment:
Q  2 gcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccga 101  Q
    ||||||| ||||| ||| ||||| ||||||||||| |||||| ||||||| ||||||||||| || ||||| ||| |||||||||||||| |||||||||    
T  22955465 gcagaagttccatttttgactaaacgtccttctcggactccttcttccaattgtacacccataccgaccatttctgcaaagttcttgggcgtacttccga 22955564  T
Q  102 ccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggc 186  Q
    ||||||||||||||||||| ||| | ||||||||||||||||  |||||||||||||||||||||||||| || |||||||||||    
T  22955565 ccatcttctcgtagtagaactgactaagagtttttaagaagaatttggtcatctccttctcttctatacgcgggctgacttgggc 22955649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 4 - 186
Target Start/End: Complemental strand, 34465338 - 34465156
Alignment:
Q  4 agaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgacc 103  Q
    |||| |||||||||| ||||| ||||||||||| |||||| |||||||||| ||||||||||||||||| ||  ||||||| |||||| |||||||||||    
T  34465338 agaaactccatcttttactaaacgtccttctcggactccttcttccaactgcacacccatgccaaccatttcagcaaagtttttgggcgtacttccgacc 34465239  T
Q  104 atcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggc 186  Q
    ||||||||||||||||| ||| |||||||||||||||| |  |||||||| ||||||||||||||||| || |||||||||||    
T  34465238 atcttctcgtagtagaactgactgagagtttttaagaaaagtttggtcatttccttctcttctatacgtgggctgacttgggc 34465156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 26 - 195
Target Start/End: Complemental strand, 1801878 - 1801709
Alignment:
Q  26 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 125  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  1801878 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 1801779  T
Q  126 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 195  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| ||||||||    
T  1801778 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatc 1801709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 26 - 195
Target Start/End: Original strand, 7258459 - 7258628
Alignment:
Q  26 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 125  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  7258459 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 7258558  T
Q  126 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 195  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| ||||||||    
T  7258559 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatc 7258628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 26 - 195
Target Start/End: Complemental strand, 7790574 - 7790405
Alignment:
Q  26 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 125  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  7790574 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 7790475  T
Q  126 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 195  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| ||||||||    
T  7790474 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatc 7790405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 26 - 195
Target Start/End: Original strand, 12391950 - 12392119
Alignment:
Q  26 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 125  Q
    ||||||||||| || ||| ||||||||||||||||||| |||||||||||  |||| ||||||||| |||||||||||||||||| ||||||||| ||||    
T  12391950 cgtccttctcggaccccttcttccaactgtacacccataccaaccatctcagcaaaattcttgggcgtacttccgaccatcttcttgtagtagaactgat 12392049  T
Q  126 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 195  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||| ||  |||||||||| ||||||||    
T  12392050 tgagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgggcagcggtatc 12392119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 36379496 - 36379674
Alignment:
Q  20 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 119  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||| | ||| |||| ||  |||| ||||||||||| | |||||| |    
T  36379496 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctctgcgaagctctttggtgtactcccgaccatctttttgtagtaaa 36379595  T
Q  120 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 198  Q
    | ||||| |||||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  36379596 aatgatttagagtttttaggaagagcttggtcatctctttctcctcaatgcgtgggctgacttgggcagcggtgtctct 36379674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 37004168 - 37004346
Alignment:
Q  20 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 119  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||| | ||| |||| ||  |||| ||||||||||| | |||||| |    
T  37004168 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctctgcgaagctctttggtgtactcccgaccatctttttgtagtaaa 37004267  T
Q  120 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 198  Q
    | ||||| |||||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  37004268 aatgatttagagtttttaggaagagcttggtcatctctttctcctcaatgcgtgggctgacttgggcagcggtgtctct 37004346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 5443730 - 5443908
Alignment:
Q  20 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 119  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  5443730 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 5443829  T
Q  120 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 198  Q
    | ||||| |||||||||| ||||| |||||||||||| ||||| || ||||| || ||||||||||| ||||| |||||    
T  5443830 aatgattcagagtttttaggaagagcttggtcatctctttctcctcaatacgtgggctgacttgggcagcggtgtctct 5443908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 17953739 - 17953561
Alignment:
Q  20 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 119  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||| | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  17953739 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctctgcgaagctctttggtgtactcccgaccatctttttgtaataaa 17953640  T
Q  120 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 198  Q
    | ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  17953639 aatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctct 17953561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 11947929 - 11948107
Alignment:
Q  20 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 119  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  11947929 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 11948028  T
Q  120 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 198  Q
    | ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  11948029 aatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctct 11948107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 15788247 - 15788425
Alignment:
Q  20 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 119  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  15788247 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 15788346  T
Q  120 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 198  Q
    | ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  15788347 aatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctct 15788425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 31516947 - 31516769
Alignment:
Q  20 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 119  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  31516947 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 31516848  T
Q  120 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 198  Q
    | ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  31516847 aatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctct 31516769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 146; Significance: 4e-77; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 5 - 198
Target Start/End: Original strand, 2339975 - 2340168
Alignment:
Q  5 gaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgacca 104  Q
    |||||||||||||||||||| ||||||||||| |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||| ||||||||||||    
T  2339975 gaagctccatctttaactaatcgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggcgtacttccgacca 2340074  T
Q  105 tcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 198  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||    
T  2340075 tcttctcgtagtagaaatgattgagagtttttaagaagatcttggtcatctccttctcttctatacgtgggctgacttgggcagcggtatctct 2340168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 26 - 195
Target Start/End: Original strand, 6201487 - 6201656
Alignment:
Q  26 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 125  Q
    ||||||||||| |||||| ||||||| ||||| || || |||||||||||  |||||||||||||| |||||||||||||||||||||||||||| ||||    
T  6201487 cgtccttctcggactccttcttccaattgtacgcctataccaaccatctcagcaaagttcttgggcgtacttccgaccatcttctcgtagtagaactgat 6201586  T
Q  126 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 195  Q
    | || ||||||||||||| |||| ||||||| |||||||||| ||| ||  |||||||||| ||||||||    
T  6201587 taagggtttttaagaagagcttgatcatctctttctcttctacacgcgggatgacttgggcagcggtatc 6201656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 5632647 - 5632825
Alignment:
Q  20 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 119  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||| ||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  5632647 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatttccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 5632746  T
Q  120 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 198  Q
    | ||||| |||||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  5632747 aatgatttagagtttttaggaagagcttggtcatctctttctcctcaatgcgtgggctgacttgggcagcggtgtctct 5632825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 5 - 198
Target Start/End: Complemental strand, 841966 - 841773
Alignment:
Q  5 gaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgacca 104  Q
    |||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |||||||||||  |||||||||||||| ||||||||||||    
T  841966 gaagctccatctttaactaatcgtccttctcggactccttcttccaactgtacacccataccaaccatctcagcaaagttcttgggcgtacttccgacca 841867  T
Q  105 tcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 198  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||||||||| |||||||||||    
T  841866 tcttctcgtagtagaactgattgagagtttttaagaagatcttggtcatctctttctcctctatacgtgggctgacttgggcagcggtatctct 841773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 5 - 198
Target Start/End: Complemental strand, 849142 - 848949
Alignment:
Q  5 gaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgacca 104  Q
    |||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |||||||||||  |||||||||||||| ||||||||||||    
T  849142 gaagctccatctttaactaatcgtccttctcggactccttcttccaactgtacacccataccaaccatctcagcaaagttcttgggcgtacttccgacca 849043  T
Q  105 tcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 198  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||||||||| |||||||||||    
T  849042 tcttctcgtagtagaactgattgagagtttttaagaagatcttggtcatctctttctcctctatacgtgggctgacttgggcagcggtatctct 848949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 5 - 198
Target Start/End: Complemental strand, 1207146 - 1206953
Alignment:
Q  5 gaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgacca 104  Q
    |||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |||||||||||  |||||||||||||| ||||||||||||    
T  1207146 gaagctccatctttaactaatcgtccttctcggactccttcttccaactgtacacccataccaaccatctcagcaaagttcttgggcgtacttccgacca 1207047  T
Q  105 tcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 198  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||||||||| |||||||||||    
T  1207046 tcttctcgtagtagaactgattgagagtttttaagaagatcttggtcatctctttctcctctatacgtgggctgacttgggcagcggtatctct 1206953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 4 - 186
Target Start/End: Original strand, 801934 - 802116
Alignment:
Q  4 agaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgacc 103  Q
    ||||||||||| ||| ||||| | ||||||||| |||||| ||||||| || ||||||||||||||||| ||  |||||||||||||| |||||||||||    
T  801934 agaagctccattttttactaaacatccttctcggactccttcttccaattgcacacccatgccaaccatttcagcaaagttcttgggcgtacttccgacc 802033  T
Q  104 atcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggc 186  Q
    ||||||||||||||||| ||| ||||||||||||||||||  |||||||| ||||||||||||||||| || |||||||||||    
T  802034 atcttctcgtagtagaactgactgagagtttttaagaagagtttggtcatttccttctcttctatacgtgggctgacttgggc 802116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 4 - 186
Target Start/End: Original strand, 16290801 - 16290983
Alignment:
Q  4 agaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgacc 103  Q
    ||||||||||||||| ||||| ||||||||||| |||||| |||||||||| ||||||||||| ||||| ||  | |||||||||||| |||||||||||    
T  16290801 agaagctccatcttttactaaacgtccttctcggactccttcttccaactgcacacccatgccgaccatttcagcgaagttcttgggcgtacttccgacc 16290900  T
Q  104 atcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggc 186  Q
    ||||||||||||||||| ||| |||||||||||||||| |  |||||||| ||||||||||||||||| || |||||||||||    
T  16290901 atcttctcgtagtagaactgactgagagtttttaagaaaagtttggtcatttccttctcttctatacgtgggctgacttgggc 16290983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 26 - 195
Target Start/End: Original strand, 23883312 - 23883481
Alignment:
Q  26 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 125  Q
    ||||||||||| || ||| ||||||||||||||||||| |||||||||||  |||| ||||||||| |||||||||||||||||| ||||||||| ||||    
T  23883312 cgtccttctcggaccccttcttccaactgtacacccataccaaccatctcagcaaaattcttgggcgtacttccgaccatcttcttgtagtagaactgat 23883411  T
Q  126 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 195  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||| ||  |||||||||| ||||||||    
T  23883412 tgagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgggcagcggtatc 23883481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 26 - 195
Target Start/End: Original strand, 42634783 - 42634952
Alignment:
Q  26 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 125  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  42634783 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 42634882  T
Q  126 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 195  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| ||||||||    
T  42634883 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatc 42634952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 26 - 195
Target Start/End: Complemental strand, 8814196 - 8814027
Alignment:
Q  26 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 125  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| |||| |||| ||||    
T  8814196 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagcagaactgat 8814097  T
Q  126 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 195  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| ||||||||    
T  8814096 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatc 8814027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 9466222 - 9466044
Alignment:
Q  20 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 119  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  9466222 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 9466123  T
Q  120 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 198  Q
    | ||||| |||||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  9466122 aatgattcagagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctct 9466044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 30373472 - 30373650
Alignment:
Q  20 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 119  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||||||||||||||| | ||| || |    
T  30373472 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtacttccgaccatctttttgtaataaa 30373571  T
Q  120 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 198  Q
    | ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  30373572 aatgattcaaagtttttaggaagagcttggtcatctctttctcctcaatccgtgggctgacttgggcagcggtgtctct 30373650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 16396975 - 16397153
Alignment:
Q  20 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 119  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  16396975 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 16397074  T
Q  120 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 198  Q
    | ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  16397075 aatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctct 16397153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0387 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: scaffold0387
Description:

Target: scaffold0387; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 5832 - 6014
Alignment:
Q  20 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 119  Q
    ||||| ||||||||||| |||||| ||||||||||||||||||| |||||||||||  | ||||| |||||| |||||||||||||||||||||||||||    
T  5832 actaaacgtccttctcggactccttcttccaactgtacacccataccaaccatctcagcgaagtttttgggcgtacttccgaccatcttctcgtagtaga 5931  T
Q  120 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcat 202  Q
    | ||||| |||||||||||||||| |||||||||||| |||||||||||||| |  ||||||||||| |||||||||||||||    
T  5932 actgatttagagtttttaagaagagcttggtcatctctttctcttctatacgtgagctgacttgggcagcggtatctcttcat 6014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 115; Significance: 1e-58; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 2412159 - 2411981
Alignment:
Q  20 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 119  Q
    ||||| ||||||||||| |||||| ||||||||||||||||||| |||||||||||  |||||||||||||| |||||||||||||||||||||||||||    
T  2412159 actaaacgtccttctcgcactccttcttccaactgtacacccataccaaccatctcagcaaagttcttgggcgtacttccgaccatcttctcgtagtaga 2412060  T
Q  120 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 198  Q
    | |||||||||||||||||||| | |||||||||||  || ||||||||||| ||||| |||||||| |||||||||||    
T  2412059 actgattgagagtttttaagaaaagcttggtcatctttttttcttctatacgcggactaacttgggcagcggtatctct 2411981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 2 - 167
Target Start/End: Original strand, 20054614 - 20054779
Alignment:
Q  2 gcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccga 101  Q
    ||||||| | ||||| ||||||| ||||||||||| |||||| ||||||||||||||||||| || ||||||||  |||||||||||||| |||||||||    
T  20054614 gcagaagtttcatctctaactaaacgtccttctcggactccttcttccaactgtacacccataccgaccatctcagcaaagttcttgggcgtacttccga 20054713  T
Q  102 ccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttcta 167  Q
    ||||||||||||||||||| ||||||||||||||||||||||  ||||||||||| ||||||||||    
T  20054714 ccatcttctcgtagtagaactgattgagagtttttaagaagagtttggtcatctctttctcttcta 20054779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 26 - 195
Target Start/End: Original strand, 20044396 - 20044565
Alignment:
Q  26 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 125  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  20044396 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 20044495  T
Q  126 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 195  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| ||||||||    
T  20044496 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatc 20044565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 26 - 195
Target Start/End: Original strand, 619668 - 619837
Alignment:
Q  26 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 125  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| |||| |||| ||||    
T  619668 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagcagaactgat 619767  T
Q  126 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 195  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| ||||||||    
T  619768 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatc 619837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 26 - 195
Target Start/End: Original strand, 16821526 - 16821695
Alignment:
Q  26 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 125  Q
    ||||||||||| || ||| ||||||||||||||||||| |||||||||||  |||| ||||||||| |||||||||||||||||| ||||||||| ||||    
T  16821526 cgtccttctcggaccccttcttccaactgtacacccataccaaccatctcagcaaaattcttgggcgtacttccgaccatcttcttgtagtagaactgat 16821625  T
Q  126 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 195  Q
    ||||||||||||||||||  |||||||| || |||||||||| ||| || ||||||||||| ||||||||    
T  16821626 tgagagtttttaagaagaggttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatc 16821695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 26 - 195
Target Start/End: Original strand, 24147211 - 24147380
Alignment:
Q  26 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 125  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  24147211 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 24147310  T
Q  126 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 195  Q
    |||||||||||||||||| ||||||||| || |||||||||| | | || ||||||||||| ||||||||    
T  24147311 tgagagtttttaagaagagcttggtcatttctttctcttctacatgcgggctgacttgggcagcggtatc 24147380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 26 - 195
Target Start/End: Complemental strand, 27513705 - 27513536
Alignment:
Q  26 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 125  Q
    ||||||||||| |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||  |||||||||||||||||||||||||||| ||||    
T  27513705 cgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggtgtacttccgaccatcttctcgtagtagaactgat 27513606  T
Q  126 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 195  Q
    | |||||||||||||||| |||||||||||| |||||||||| ||| ||  ||||||| || ||||||||    
T  27513605 taagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgagcagcggtatc 27513536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 4 - 198
Target Start/End: Original strand, 2410416 - 2410606
Alignment:
Q  4 agaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgacc 103  Q
    |||||||||||| || ||||| ||||||| ||  | |||| ||||||||||||||||||| |||||||||||  |||||||||||||| |||||||||||    
T  2410416 agaagctccatcctttactaaacgtccttttcagattccttcttccaactgtacacccataccaaccatctcagcaaagttcttgggcgtacttccgacc 2410515  T
Q  104 atcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 198  Q
    ||||||||||||||    | | |||||||||||||||| |||||||||||||| || ||||||||||| || || |||||||  || ||||||||    
T  2410516 atcttctcgtagta----taactgagagtttttaagaaaatcttggtcatctctttttcttctatacgcgggctaacttgggtagcagtatctct 2410606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 9139923 - 9140101
Alignment:
Q  20 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 119  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  9139923 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 9140022  T
Q  120 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 198  Q
    | ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  9140023 aatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctct 9140101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 5e-58; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 21764040 - 21764225
Alignment:
Q  1 agcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccg 100  Q
    |||||||||||||||||| ||||| ||||||||||| |||||| |||||||||| |||||||| |||||||||||  | |||||||||||| ||||||||    
T  21764040 agcagaagctccatcttttactaaacgtccttctcggactccttcttccaactgcacacccataccaaccatctcagcgaagttcttgggcgtacttccg 21764139  T
Q  101 accatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggc 186  Q
    |||||||||||||||||||| ||| | ||||||||||||||||  |||||||| ||||||||||||||||| || |||||||||||    
T  21764140 accatcttctcgtagtagaactgactaagagtttttaagaagagtttggtcatttccttctcttctatacgcgggctgacttgggc 21764225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 22946033 - 22945855
Alignment:
Q  20 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 119  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  22946033 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 22945934  T
Q  120 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 198  Q
    | ||||| |||||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  22945933 aatgattcagagtttttaggaagagcttggtcatctctttctcctcaatgcgtgggctgacttgggcagcggtgtctct 22945855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 12380298 - 12380120
Alignment:
Q  20 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 119  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  12380298 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 12380199  T
Q  120 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 198  Q
    | ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  12380198 aatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctct 12380120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 2 - 198
Target Start/End: Original strand, 17299 - 17495
Alignment:
Q  2 gcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccga 101  Q
    ||||||| ||||||| | ||||| ||||||||||| |||||| ||||||||||||||||||| || ||||| ||| |||||||||||||| || ||||||    
T  17299 gcagaagttccatctctgactaaacgtccttctcggactccttcttccaactgtacacccataccgaccatttctgcaaagttcttgggcgtatttccga 17398  T
Q  102 ccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 198  Q
    ||||||||||||||||||| ||||  ||||||||||||||||  |||||||||||||||||||||||||| || |||| |||||| || ||||||||    
T  17399 ccatcttctcgtagtagaactgatcaagagtttttaagaagagtttggtcatctccttctcttctatacgcgggctgatttgggcagcagtatctct 17495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 8e-54; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 4 - 186
Target Start/End: Complemental strand, 20439791 - 20439609
Alignment:
Q  4 agaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgacc 103  Q
    |||| |||||||||| ||||| ||||||||||| |||||| |||||||||| ||||||||||||||||| ||  ||||||| |||||| |||||||||||    
T  20439791 agaaactccatcttttactaaacgtccttctcggactccttcttccaactgcacacccatgccaaccatttcagcaaagtttttgggcgtacttccgacc 20439692  T
Q  104 atcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggc 186  Q
    ||||||||||||||||| ||| |||||||||||||||| |  |||||||| ||||||||||||||||| || |||||||||||    
T  20439691 atcttctcgtagtagaactgactgagagtttttaagaaaagtttggtcatttccttctcttctatacgtgggctgacttgggc 20439609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 4 - 186
Target Start/End: Complemental strand, 41436956 - 41436774
Alignment:
Q  4 agaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgacc 103  Q
    |||| |||||||||| ||||| ||||||||||| |||||| |||||||||| ||||||||||||||||| ||  ||||||| |||||| |||||||||||    
T  41436956 agaaactccatcttttactaaacgtccttctcggactccttcttccaactgcacacccatgccaaccatttcagcaaagtttttgggcgtacttccgacc 41436857  T
Q  104 atcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggc 186  Q
    ||||||||||||||||| ||| |||||||||||||||| |  |||||||| ||||||||||||||||| || |||||||||||    
T  41436856 atcttctcgtagtagaactgactgagagtttttaagaaaagtttggtcatttccttctcttctatacgtgggctgacttgggc 41436774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 26 - 195
Target Start/End: Complemental strand, 6198159 - 6197990
Alignment:
Q  26 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 125  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  6198159 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 6198060  T
Q  126 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 195  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| ||||||||    
T  6198059 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatc 6197990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 26 - 195
Target Start/End: Complemental strand, 8808075 - 8807906
Alignment:
Q  26 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 125  Q
    ||||||||||| || ||| ||||||||||||||||||| |||||||||||  |||| ||||||||| |||||||||||||||||| ||||||||| ||||    
T  8808075 cgtccttctcggaccccttcttccaactgtacacccataccaaccatctcagcaaaattcttgggcgtacttccgaccatcttcttgtagtagaactgat 8807976  T
Q  126 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 195  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||| ||  |||||||||| ||||||||    
T  8807975 tgagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgggcagcggtatc 8807906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 26 - 195
Target Start/End: Original strand, 15533637 - 15533806
Alignment:
Q  26 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 125  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  15533637 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 15533736  T
Q  126 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 195  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| ||||||||    
T  15533737 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatc 15533806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 26 - 195
Target Start/End: Complemental strand, 21611505 - 21611336
Alignment:
Q  26 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 125  Q
    ||||||||||| || ||| ||||||||||||||||||| |||||||||||  |||| ||||||||| |||||||||||||||||| ||||||||| ||||    
T  21611505 cgtccttctcggaccccttcttccaactgtacacccataccaaccatctcagcaaaattcttgggcgtacttccgaccatcttcttgtagtagaactgat 21611406  T
Q  126 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 195  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||| ||  |||||||||| ||||||||    
T  21611405 tgagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgggcagcggtatc 21611336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 26 - 195
Target Start/End: Original strand, 46397011 - 46397180
Alignment:
Q  26 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 125  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  46397011 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 46397110  T
Q  126 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 195  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| ||||||||    
T  46397111 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatc 46397180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 26 - 195
Target Start/End: Complemental strand, 8620200 - 8620030
Alignment:
Q  26 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 125  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  8620200 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 8620101  T
Q  126 tgagagt-ttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 195  Q
    ||||||| ||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| ||||||||    
T  8620100 tgagagttttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatc 8620030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 2 - 198
Target Start/End: Original strand, 15596526 - 15596722
Alignment:
Q  2 gcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccga 101  Q
    ||||||| | ||||||| ||||| ||||||| ||| || ||| |||||||||| |||||||| |||||||||||  |||||||||||||| ||||||| |    
T  15596526 gcagaagttgcatcttttactaaacgtccttgtcggaccccttcttccaactgcacacccataccaaccatctcagcaaagttcttgggcgtacttccaa 15596625  T
Q  102 ccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 198  Q
    ||||| | |||||||||||    ||||||||||||||||||| ||||||||||||||| || |||||||| ||  |||||||||| |||||||||||    
T  15596626 ccatcctttcgtagtagaaagagttgagagtttttaagaagagcttggtcatctccttttcctctatacgcgggttgacttgggcagcggtatctct 15596722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 2 - 198
Target Start/End: Complemental strand, 15915195 - 15914999
Alignment:
Q  2 gcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccga 101  Q
    ||||||| | ||||||| ||||| ||||||||||| || ||| |||||||||| |||||||| |||||||||||  |||||||||||||| ||||||| |    
T  15915195 gcagaagttgcatcttttactaaacgtccttctcggaccccttcttccaactgcacacccataccaaccatctcagcaaagttcttgggcgtacttccaa 15915096  T
Q  102 ccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 198  Q
    ||||| | |||||||||||    |||||||||||||||||||  |||||||||||||| || |||||||  ||  |||||||||| | |||||||||    
T  15915095 ccatcctttcgtagtagaaagagttgagagtttttaagaagagtttggtcatctccttttcctctatacacgggttgacttgggcagtggtatctct 15914999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 46376913 - 46376735
Alignment:
Q  20 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 119  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  46376913 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 46376814  T
Q  120 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 198  Q
    | ||||| |||||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  46376813 aatgatttagagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctct 46376735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 5954477 - 5954655
Alignment:
Q  20 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 119  Q
    ||||| ||||||||||| |||||| |||| ||||| || ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  5954477 actaagcgtccttctcggactccttcttctaactggactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 5954576  T
Q  120 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 198  Q
    | ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  5954577 aatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctct 5954655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0551 (Bit Score: 106; Significance: 3e-53; HSPs: 2)
Name: scaffold0551
Description:

Target: scaffold0551; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 26 - 195
Target Start/End: Original strand, 9879 - 10048
Alignment:
Q  26 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 125  Q
    ||||||||||| |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  9879 cgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggcgtacttctgaccatcttctcgtagtagaactgat 9978  T
Q  126 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 195  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||| ||  |||||||||| ||||||||    
T  9979 tgagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgggcagcggtatc 10048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0551; HSP #2
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 83 - 195
Target Start/End: Original strand, 3822 - 3934
Alignment:
Q  83 ttcttgggcatacttccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgactt 182  Q
    ||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||| ||| ||  ||||||    
T  3822 ttcttgggcgtacttctgaccatcttctcgtagtagaactgattgagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgactt 3921  T
Q  183 gggccgcggtatc 195  Q
    |||| ||||||||    
T  3922 gggcagcggtatc 3934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0435 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: scaffold0435
Description:

Target: scaffold0435; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 26 - 198
Target Start/End: Original strand, 12431 - 12603
Alignment:
Q  26 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 125  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| |||||||||||||||||||||||||||| ||||    
T  12431 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtacttccgaccatcttctcgtagtagaactgat 12530  T
Q  126 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 198  Q
    | |||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| ||| |||||||    
T  12531 taagagtttttaagaagagcttggtcatatctttctcttctacacgcgggctgacttgggcagcgatatctct 12603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 2 - 186
Target Start/End: Complemental strand, 32012 - 31828
Alignment:
Q  2 gcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccga 101  Q
    ||||||| ||||||| ||||||| ||||||||||| | |||| ||||||||||||| ||||| |  ||||| ||| |||||||||||||| |||||||||    
T  32012 gcagaagttccatctctaactaaacgtccttctcggattccttcttccaactgtacgcccatactgaccatttctgcaaagttcttgggcgtacttccga 31913  T
Q  102 ccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggc 186  Q
    ||||| ||||||||||||||||||  ||||||||||||||||  |||||||||||||||||||||||||| || |||||||||||    
T  31912 ccatcctctcgtagtagaattgatcaagagtttttaagaagagtttggtcatctccttctcttctatacgcgggctgacttgggc 31828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 26 - 186
Target Start/End: Original strand, 15575638 - 15575798
Alignment:
Q  26 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 125  Q
    ||||||||||| |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||| |||||||||||||||||||||||||||| ||||    
T  15575638 cgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggcgtacttccgaccatcttctcgtagtagaactgat 15575737  T
Q  126 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggc 186  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||| ||  ||||||||||    
T  15575738 tgagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgggc 15575798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 16724575 - 16724753
Alignment:
Q  17 ttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagt 116  Q
    ||||| || ||||||||||| |||||| ||||||| ||||| ||||| |||||||||||  |||||||||||||| ||||||||||||||||||||||||    
T  16724575 ttaaccaatcgtccttctcggactccttcttccaattgtacgcccataccaaccatctcagcaaagttcttgggcgtacttccgaccatcttctcgtagt 16724674  T
Q  117 agaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 195  Q
    |||| |||||||||||||||||||||| |||||||||||| |||||||||| ||  ||  |||||||||| ||||||||    
T  16724675 agaactgattgagagtttttaagaagagcttggtcatctctttctcttctacactcgggatgacttgggcagcggtatc 16724753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 26 - 195
Target Start/End: Complemental strand, 14921108 - 14920939
Alignment:
Q  26 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 125  Q
    ||||||||||| |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||   ||||||||||||||||||||||||||| ||||    
T  14921108 cgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggtgcacttccgaccatcttctcgtagtagaactgat 14921009  T
Q  126 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 195  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||| ||  |||||||||| ||| ||||    
T  14921008 tgagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgggcagcgatatc 14920939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 26 - 195
Target Start/End: Original strand, 15899271 - 15899440
Alignment:
Q  26 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 125  Q
    ||||||||||| |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||  |||||||||||||||||||||||||||  ||||    
T  15899271 cgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggtgtacttccgaccatcttctcgtagtagatctgat 15899370  T
Q  126 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 195  Q
    ||||||||||||| |||| |||||||||||| |||||||||| ||| ||  |||||||||| ||||||||    
T  15899371 tgagagtttttaaaaagagcttggtcatctctttctcttctacacgcgggatgacttgggcagcggtatc 15899440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 26 - 195
Target Start/End: Complemental strand, 18040019 - 18039850
Alignment:
Q  26 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 125  Q
    ||||||||||| |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||  |||||||||||||||||||||||||||| ||||    
T  18040019 cgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggtgtacttccgaccatcttctcgtagtagaactgat 18039920  T
Q  126 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 195  Q
    | |||||||||||||||| |||||||||||| |||||||||| ||| ||  ||||||| || ||||||||    
T  18039919 taagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgagcagcggtatc 18039850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 26 - 195
Target Start/End: Original strand, 15571510 - 15571679
Alignment:
Q  26 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 125  Q
    ||||||||||| |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||   ||||| ||||||||||||||||||||| ||||    
T  15571510 cgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggagaacttcagaccatcttctcgtagtagaactgat 15571609  T
Q  126 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 195  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||| ||  |||||||||| ||| ||||    
T  15571610 tgagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgggcagcgatatc 15571679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 26 - 195
Target Start/End: Complemental strand, 22707709 - 22707540
Alignment:
Q  26 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 125  Q
    ||||||||||| |  ||| ||||||||||||||||||| |||||||||||  |||| ||||||||| |||||||||||||||||| ||||||||| ||||    
T  22707709 cgtccttctcggatcccttcttccaactgtacacccataccaaccatctcagcaaaattcttgggcgtacttccgaccatcttcttgtagtagaactgat 22707610  T
Q  126 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 195  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| ||  |||||||||| ||||||||    
T  22707609 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggatgacttgggcagcggtatc 22707540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 7e-51; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 26 - 195
Target Start/End: Original strand, 21479703 - 21479872
Alignment:
Q  26 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 125  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  21479703 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 21479802  T
Q  126 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 195  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| ||||||||    
T  21479803 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatc 21479872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1197 (Bit Score: 97; Significance: 7e-48; HSPs: 1)
Name: scaffold1197
Description:

Target: scaffold1197; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 23 - 167
Target Start/End: Complemental strand, 2287 - 2143
Alignment:
Q  23 aaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaatt 122  Q
    |||||||||||||| |||||| ||||||||||||| ||||| |||||||||||  ||||||||| |||| |||||||||||||||||||||||||||| |    
T  2287 aaccgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttctagggcgtacttccgaccatcttctcgtagtagaact 2188  T
Q  123 gattgagagtttttaagaagatcttggtcatctccttctcttcta 167  Q
    ||||||||||||||||||||| |||||||||||| || |||||||    
T  2187 gattgagagtttttaagaagagcttggtcatctctttttcttcta 2143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 167
Target Start/End: Complemental strand, 74936 - 74786
Alignment:
Q  17 ttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagt 116  Q
    ||||| || ||||||||||| |||||| ||||||| ||||| ||||| |||||||||||  |||||||||||||| |||| |||||||||||||||||||    
T  74936 ttaaccaatcgtccttctcggactccttcttccaattgtacgcccataccaaccatctcagcaaagttcttgggcgtactgccgaccatcttctcgtagt 74837  T
Q  117 agaattgattgagagtttttaagaagatcttggtcatctccttctcttcta 167  Q
    |||| |||||||||||||||||||||| |||||||||||| ||||||||||    
T  74836 agaactgattgagagtttttaagaagagcttggtcatctctttctcttcta 74786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 25801 - 25623
Alignment:
Q  20 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 119  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  25801 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 25702  T
Q  120 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 198  Q
    | ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  25701 aatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctct 25623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0441 (Bit Score: 94; Significance: 4e-46; HSPs: 1)
Name: scaffold0441
Description:

Target: scaffold0441; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 26 - 167
Target Start/End: Complemental strand, 10795 - 10654
Alignment:
Q  26 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 125  Q
    |||| ||||||||||||| ||||||||||||| ||||| |||||||||||  |||||||||||||  |||||||| ||||||||||||||||||| ||||    
T  10795 cgtctttctcgtactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggtgtacttccgtccatcttctcgtagtagaactgat 10696  T
Q  126 tgagagtttttaagaagatcttggtcatctccttctcttcta 167  Q
    |||||||||||||||||| |||||||||||| ||||||||||    
T  10695 tgagagtttttaagaagagcttggtcatctctttctcttcta 10654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0104
Description:

Target: scaffold0104; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 2 - 164
Target Start/End: Original strand, 28848 - 29010
Alignment:
Q  2 gcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccga 101  Q
    ||||||| || |||| ||||||| ||||||||||| ||||||  ||||||||||||  |||| |||||||||||  |||||||||||||| |||||||||    
T  28848 gcagaagttctatctctaactaaacgtccttctcggactcctttttccaactgtacgtccataccaaccatctcagcaaagttcttgggcgtacttccga 28947  T
Q  102 ccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctctt 164  Q
    ||||||||||||||||||| |||||||| |||||||||||||  ||||||||||| |||||||    
T  28948 ccatcttctcgtagtagaactgattgagggtttttaagaagagtttggtcatctctttctctt 29010  T

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Target: scaffold0094 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 2 - 198
Target Start/End: Original strand, 38875 - 39071
Alignment:
Q  2 gcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccga 101  Q
    ||||||| | ||||||| ||||| ||||||||||| || ||| |||||||||| |||||||| |||||||||||  |||||||||||||| ||||||| |    
T  38875 gcagaagttgcatcttttactaaacgtccttctcggaccccttcttccaactgcacacccataccaaccatctcagcaaagttcttgggcgtacttccaa 38974  T
Q  102 ccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 198  Q
    ||||| | |||||||||||    |||||||||||||||||||  |||||||||||||| || |||||||| ||  |||||||||| | |||||||||    
T  38975 ccatcctttcgtagtagaaagagttgagagtttttaagaagagtttggtcatctccttttcctctatacgcgggttgacttgggcagtggtatctct 39071  T

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Target: scaffold0002 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 302544 - 302366
Alignment:
Q  20 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 119  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  302544 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 302445  T
Q  120 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 198  Q
    | ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  302444 aatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctct 302366  T

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Target: scaffold0595 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0595
Description:

Target: scaffold0595; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 9619 - 9440
Alignment:
Q  20 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagt-ag 118  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| || |||||||| | ||| | |     
T  9619 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccaaccatctttttgtaataaa 9520  T
Q  119 aattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 198  Q
    || ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  9519 aaatgatttaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctct 9440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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