View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_340 (Length: 201)
Name: NF8905A_low_340
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_340 |
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| [»] scaffold0479 (1 HSPs) |
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Alignment Details
Target: scaffold0479 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 21 - 188
Target Start/End: Original strand, 1903 - 2070
Alignment:
| Q |
21 |
atcacgattacaaaagtgcattgctttgagtaccacggaagctgaatacatcgcaatccctgaaggttgtaaggagatcctgtggatgaagaagttcctg |
120 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
1903 |
atcacgattacaaaagtgcattgctttgagtaccacgaaagctgaatacatcgcaatcactgaaggttgtaaggagatcctatggatgaagaagttccta |
2002 |
T |
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| Q |
121 |
caagagttaggtcaaaatcaagaaagctatgttctctattgcgacagtcaaagcgcgattcatctcag |
188 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2003 |
caagagttaggccaaaatcaagaaagctatgttctctattgcgacagtcaaagcgcgattcatctcag |
2070 |
T |
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Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 21 - 188
Target Start/End: Complemental strand, 54968244 - 54968077
Alignment:
| Q |
21 |
atcacgattacaaaagtgcattgctttgagtaccacggaagctgaatacatcgcaatccctgaaggttgtaaggagatcctgtggatgaagaagttcctg |
120 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
54968244 |
atcacgattacaaaagtgcattgctttgagtaccacagaagctgaatacatcgcaatcactgaaggttgtaaggagatcctgtggatgaagaagttcctg |
54968145 |
T |
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| Q |
121 |
caagagttaggtcaaaatcaagaaagctatgttctctattgcgacagtcaaagcgcgattcatctcag |
188 |
Q |
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||||||||||| |||| ||||||||| ||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
54968144 |
caagagttaggccaaagtcaagaaagttatgttctctattgcgacagtcagagcgcaattcatctcag |
54968077 |
T |
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Target: chr6 (Bit Score: 116; Significance: 3e-59; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 21 - 188
Target Start/End: Complemental strand, 22982173 - 22982006
Alignment:
| Q |
21 |
atcacgattacaaaagtgcattgctttgagtaccacggaagctgaatacatcgcaatccctgaaggttgtaaggagatcctgtggatgaagaagttcctg |
120 |
Q |
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||||||| ||||||| ||| ||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
22982173 |
atcacgactacaaaaatgcgttgctttgagtaccatagaagctgaatacatcacaatcactgaaggttgtaaggagatcatgtggatgaagaagttcctg |
22982074 |
T |
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| Q |
121 |
caagagttaggtcaaaatcaagaaagctatgttctctattgcgacagtcaaagcgcgattcatctcag |
188 |
Q |
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||||||||||| || |||||| |||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
22982073 |
caagagttaggccagaatcaaaaaagctatgttctctattgcgacagtcagagtgcgattcatctcag |
22982006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 21 - 188
Target Start/End: Original strand, 23806235 - 23806402
Alignment:
| Q |
21 |
atcacgattacaaaagtgcattgctttgagtaccacggaagctgaatacatcgcaatccctgaaggttgtaaggagatcctgtggatgaagaagttcctg |
120 |
Q |
| |
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||||||| ||||||| ||| ||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
23806235 |
atcacgactacaaaaatgcgttgctttgagtaccatagaagctgaatacatcacaatcactgaaggttgtaaggagatcatgtggatgaagaagttcctg |
23806334 |
T |
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| Q |
121 |
caagagttaggtcaaaatcaagaaagctatgttctctattgcgacagtcaaagcgcgattcatctcag |
188 |
Q |
| |
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||||||||||| || |||||| |||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
23806335 |
caagagttaggccagaatcaaaaaagctatgttctctattgcgacagtcagagtgcgattcatctcag |
23806402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 8e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 25 - 188
Target Start/End: Complemental strand, 4836574 - 4836411
Alignment:
| Q |
25 |
cgattacaaaagtgcattgctttgagtaccacggaagctgaatacatcgcaatccctgaaggttgtaaggagatcctgtggatgaagaagttcctgcaag |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| || |||| |
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| T |
4836574 |
cgattacaaaagtgcattgctttgagtaccacggaagctgaatacatcgcaatcactgaaggttgtaaggagatcctatggatgaagaagtttctacaag |
4836475 |
T |
|
| Q |
125 |
agttaggtcaaaatcaagaaagctatgttctctattgcgacagtcaaagcgcgattcatctcag |
188 |
Q |
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||||| | || ||||||||||| |||||||||||||| || |||||||| || ||||| ||||| |
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| T |
4836474 |
agttatgccagaatcaagaaagttatgttctctattgtgatagtcaaagtgcaattcacctcag |
4836411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 29 - 188
Target Start/End: Original strand, 33810893 - 33811052
Alignment:
| Q |
29 |
tacaaaagtgcattgctttgagtaccacggaagctgaatacatcgcaatccctgaaggttgtaaggagatcctgtggatgaagaagttcctgcaagagtt |
128 |
Q |
| |
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||||||||||| ||||||| |||||||| ||||| || |||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
33810893 |
tacaaaagtgcgttgctttaagtaccacagaagcagagtacatcgcaatcactgaaggctgtaaggagatgatgtggatgaagaagttcctgcaagagtt |
33810992 |
T |
|
| Q |
129 |
aggtcaaaatcaagaaagctatgttctctattgcgacagtcaaagcgcgattcatctcag |
188 |
Q |
| |
|
||| || |||||||||| |||||||||||||| || |||||||| || ||||| ||||| |
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| T |
33810993 |
aggccagaatcaagaaatttatgttctctattgtgatagtcaaagtgcaattcacctcag |
33811052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 29 - 188
Target Start/End: Original strand, 33815811 - 33815970
Alignment:
| Q |
29 |
tacaaaagtgcattgctttgagtaccacggaagctgaatacatcgcaatccctgaaggttgtaaggagatcctgtggatgaagaagttcctgcaagagtt |
128 |
Q |
| |
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||||||||||| ||||||| |||||||| ||||| || |||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
33815811 |
tacaaaagtgcgttgctttaagtaccacagaagcagagtacatcgcaatcactgaaggctgtaaggagatgatgtggatgaagaagttcctgcaagagtt |
33815910 |
T |
|
| Q |
129 |
aggtcaaaatcaagaaagctatgttctctattgcgacagtcaaagcgcgattcatctcag |
188 |
Q |
| |
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||| || |||||||||| |||||||||||||| || |||||||| || ||||| ||||| |
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| T |
33815911 |
aggccagaatcaagaaatttatgttctctattgtgatagtcaaagtgcaattcacctcag |
33815970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 85 - 188
Target Start/End: Complemental strand, 25003779 - 25003676
Alignment:
| Q |
85 |
ggttgtaaggagatcctgtggatgaagaagttcctgcaagagttaggtcaaaatcaagaaagctatgttctctattgcgacagtcaaagcgcgattcatc |
184 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||| ||| | |||||| |||| ||||||| |||||| || |||||||| || ||||| | |
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| T |
25003779 |
ggttgtaaggagatcccgtggatgaagaagttcatgcaagagtcaggcctgaatcaacaaagttatgttccctattgtgatagtcaaagtgcaattcacc |
25003680 |
T |
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| Q |
185 |
tcag |
188 |
Q |
| |
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|||| |
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|
| T |
25003679 |
tcag |
25003676 |
T |
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