View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_35 (Length: 380)
Name: NF8905A_low_35
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 38936003 - 38936377
Alignment:
| Q |
1 |
gtgtttggtagcaatctcaacgccgaaacggaacaaggcgaaactggttcatctcggagcagtgaaggtcttctcgaaccttctaatcgcgtcacatagt |
100 |
Q |
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| T |
38936003 |
gtgtttggtagcaatctcaacgccgaaacggaacaaggcgaaactggttcatctcggagcagtgaaggtcttctcgaaccttctaaccgcgtcacctagt |
38936102 |
T |
|
| Q |
101 |
ttgtgtgtttctgtgacggagaaggtgttgaaacttctagaaactgtgtcgtcgacgaaggaggggaggtcggagatatgtgaagcgccgtcgtgtgtgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38936103 |
ttgtgtgtttctgtgacggagaaggtgttgaaacttctagaaacggtgtcgtcgacgaaggaggggaggtcggagatatgtgaagcgccgtcgtgtgtgg |
38936202 |
T |
|
| Q |
201 |
cggcgatagtgaacaaagtattgaaagtatccaccggagcgacggagcacgcggttacaatactatggagtgtgtgttatttatttcgtgatcaaaaggc |
300 |
Q |
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| T |
38936203 |
tggcgatagtgaacaaagtattgaaagtatccaccgtagcgacggagcacgcggttacaatactatggagtgtgtgttatttatttcgtgatcaaaaggc |
38936302 |
T |
|
| Q |
301 |
gcaagaagctgttacgaaagcgaatggattaacgaagattttgcttctgatgcaaagtaattgttcgccacaagt |
375 |
Q |
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| T |
38936303 |
gcaagaagctgttacgaaagcgaatggattaacgaagattttgcttctgatgcaaagtaattgttcgccacaagt |
38936377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 239 - 375
Target Start/End: Original strand, 43741730 - 43741866
Alignment:
| Q |
239 |
gcgacggagcacgcggttacaatactatggagtgtgtgttatttatttcgtgatcaaaaggcgcaagaagctgttacgaaagcgaatggattaacgaaga |
338 |
Q |
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|||||||||||||| || || | || |||||||| |||||| | ||||| |||||||| || |||||||| ||||||| || |||||||||||||||| |
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| T |
43741730 |
gcgacggagcacgcagtaacgacgctgtggagtgtttgttatctgtttcgcgatcaaaaagcacaagaagcggttacgatggcaaatggattaacgaaga |
43741829 |
T |
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| Q |
339 |
ttttgcttctgatgcaaagtaattgttcgccacaagt |
375 |
Q |
| |
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| ||| | || || || ||||||||||| |||||||| |
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| T |
43741830 |
tattgttgctaatacagagtaattgttctccacaagt |
43741866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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