View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_41 (Length: 369)
Name: NF8905A_low_41
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_41 |
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| [»] scaffold0432 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 9805004 - 9804675
Alignment:
| Q |
1 |
gaaaccactcacataaaagacaaccacaaattagagaaatacatacaaaatgatcaagatnnnnnnntatatgaaaaaagtttggattaccttttttgcc |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |||| |||||||||| |||| |||||||||||||||||||||||||| ||||| |
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| T |
9805004 |
gaaaccactcacataaaagacaaccacaaatttgagaaagacatgcaaaatgatctagataaaaaaa-atatgaaaaaagtttggattacctttcttgcc |
9804906 |
T |
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| Q |
101 |
cgaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataaccattcatgagaggttggcaacggcgactggtcgatgtcgatctcagt |
200 |
Q |
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| T |
9804905 |
caaataatgaaacgaggttgaactttcatgaaaactccatcaaaagagataaccattcatgagaggttggcaacggcgactgatcgatgtcgatctcagt |
9804806 |
T |
|
| Q |
201 |
gaagtttcatggttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
9804805 |
gaagtttcatggttcttttttctgatcgatgtcgatctcagtgatggtgcttggagagaggttggcaacagcgattgagggagaaaattgtgtttagggt |
9804706 |
T |
|
| Q |
301 |
ttcaagagaatgagaaatgaggatgggagga |
331 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
9804705 |
ttcaagagaatgagaaatgaggatgggagga |
9804675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 216 - 359
Target Start/End: Complemental strand, 9817693 - 9817550
Alignment:
| Q |
216 |
ttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatgaga |
315 |
Q |
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| T |
9817693 |
ttttttctgatcgatgtcgatctcagcaatgttggtaggagagaggttgtcaacggcggatgagggggaaaattgtgtttagggtttcaagataatgaga |
9817594 |
T |
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| Q |
316 |
aatgaggatgggaggattattttgtttgattgatgtccatctca |
359 |
Q |
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| T |
9817593 |
aatgaggatgggaggattcttttgtttgattgatgtcgatctca |
9817550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 9817929 - 9817777
Alignment:
| Q |
1 |
gaaaccactcacataaaagacaaccacaaattagagaaatacatacaaaatgatcaagatnnnnnnntatatgaaaaaagtttggattaccttttttgcc |
100 |
Q |
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|||| |||||||||||||||||||||||||| ||||||| |||| |||||||||| |||| || || ||||||||| |||||||||||||||| |
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| T |
9817929 |
gaaatcactcacataaaagacaaccacaaatcagagaaagacatgcaaaatgatctagataaaaaa--atgtggaaaaagttttgattaccttttttgcc |
9817832 |
T |
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| Q |
101 |
cgaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataacca |
155 |
Q |
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| T |
9817831 |
caaataatggaacgaggttgaagtttcatgaaaattccatcaaaagagataacca |
9817777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 213 - 352
Target Start/End: Complemental strand, 9817577 - 9817438
Alignment:
| Q |
213 |
ttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatg |
312 |
Q |
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||||||| | |||| ||||||||||||| |||||| ||||||||||||||||| | ||| |||||||||||| ||||||||||||||||| |||||| |
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| T |
9817577 |
ttcttttgtttgattgatgtcgatctcacctatggtggtaggagagaggttggcagcagcggctgagggagaaaactttgtttagggtttcaaaagaatg |
9817478 |
T |
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| Q |
313 |
agaaatgaggatgggaggattattttgtttgattgatgtc |
352 |
Q |
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| T |
9817477 |
agaaatgaggattggaggattcttttgattgatcgatgtc |
9817438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 223 - 331
Target Start/End: Complemental strand, 9817448 - 9817341
Alignment:
| Q |
223 |
tgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatgagaaatgagg |
322 |
Q |
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||||||||||||||| ||| ||||||| || |||||||||||||| ||||| |||||||||||| | ||||||||||||| |||||||||||||||||| |
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| T |
9817448 |
tgatcgatgtcgatc-cagcgatggtggtatgagagaggttggcagcggcggctgagggagaaaactgtgtttagggtttctagagaatgagaaatgagg |
9817350 |
T |
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| Q |
323 |
atgggagga |
331 |
Q |
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| T |
9817349 |
atgggagga |
9817341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 11938 - 11788
Alignment:
| Q |
1 |
gaaaccactcacataaaagacaaccacaaattagagaaatacatacaaaatgatcaagatnnnnnnntatatgaaaaaa-gtttggattaccttttttgc |
99 |
Q |
| |
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|||| |||||||||||||||||||||||||| ||| ||| |||| |||||| || |||| || |||||||| ||| ||||||||||| ||| |
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| T |
11938 |
gaaatcactcacataaaagacaaccacaaatcagataaagacatgcaaaattatatagataaaaca--atgtgaaaaaaagttaagattaccttttatgc |
11841 |
T |
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| Q |
100 |
ccgaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataa |
152 |
Q |
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|| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11840 |
ccaattaatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataa |
11788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 209 - 359
Target Start/End: Complemental strand, 11708 - 11558
Alignment:
| Q |
209 |
atggttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagag |
308 |
Q |
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|||||||||||||| |||||||| |||||||| ||||||| || |||||||||||| | ||| ||||| || |||| ||||||| | | |||||||| |
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| T |
11708 |
atggttcttttttccaatcgatgttgatctcagcgatggtggtatgagagaggttggtagcgggagttgagagataaaactttgttttgagattcaagag |
11609 |
T |
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| Q |
309 |
aatgagaaatgaggatgggaggattattttgtttgattgatgtccatctca |
359 |
Q |
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|||| ||| |||||||||||||||| ||||||||||| ||||| |||||| |
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| T |
11608 |
aatgggaagtgaggatgggaggattcttttgtttgatcaatgtcgatctca |
11558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 213 - 331
Target Start/End: Complemental strand, 11585 - 11467
Alignment:
| Q |
213 |
ttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatg |
312 |
Q |
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||||||| | ||||| ||||||||||||| | | ||| ||| ||||||||||||| || || ||||||||||| | ||| | || ||||| |||||| |
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| T |
11585 |
ttcttttgtttgatcaatgtcgatctcagcggtagtggtagaagagaggttggcagcgacggccgagggagaaaactgtgtgtgggatttcatgagaata |
11486 |
T |
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| Q |
313 |
agaaatgaggatgggagga |
331 |
Q |
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| T |
11485 |
agaaatgaggatgggagga |
11467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 42778749 - 42778900
Alignment:
| Q |
1 |
gaaaccactcacataaaagacaaccacaaattagagaaatacatacaaaatgatcaagatnnnnnnntatatgaaaaaagtttggattaccttttttgcc |
100 |
Q |
| |
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||||||||||| ||||||| ||||||||||| | ||||| | | |||||||||| |||| || |||||||||||||||||||||||||||| |
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| T |
42778749 |
gaaaccactcatataaaaggcaaccacaaatcaaagaaaggcgtgcaaaatgatctagataaagaa--atgtgaaaaaagtttggattaccttttttgct |
42778846 |
T |
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| Q |
101 |
cgaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataacca |
155 |
Q |
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| | | |||||||||||||||| || |||||||||||| |||||||||||||||| |
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| T |
42778847 |
caattgatgaaacgaggttgaa-ttgcatgaaaactccgtcaaaagagataacca |
42778900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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